From 34a279e0da67e16136f2958242246ddade7559b4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 1 Jan 2025 15:29:14 +0100
Subject: gnu: python-hicmatrix: Work around defect in python-tables.

* gnu/packages/bioinformatics.scm (python-hicmatrix)[inputs]: Add c-blosc2.
[arguments]: Add phase 'find-blosc2.

Change-Id: I02ea5e36c24b8da330f763aae07b1616e002ed9a
---
 gnu/packages/bioinformatics.scm | 11 +++++++++++
 1 file changed, 11 insertions(+)

(limited to 'gnu/packages/bioinformatics.scm')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b037eb6ede..5c118aed07 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -19351,6 +19351,17 @@ includes operations like compartment, insulation or peak calling.")
             (base32
              "14gq7r9b64ff56l5f8h8zc2i2y3xri646jl0anb74japqxrwvlna"))))
     (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases
+      '(modify-phases %standard-phases
+         ;; TODO: this must be fixed in python-tables
+         (add-before 'check 'find-blosc2
+           (lambda* (#:key inputs #:allow-other-keys)
+             (setenv "LD_LIBRARY_PATH"
+                     (dirname (search-input-file
+                               inputs "/lib/libblosc2.so"))))))))
+    (inputs (list c-blosc2))
     (propagated-inputs
      (list python-cooler
            python-intervaltree
-- 
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