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* machine: ssh: Respect calling convention for monadic procedures.•••Fixes a regression introduced in 2885c3568edec35086f8feeae5b60259cbea407c. Reported by Mathieu Othacehe. * gnu/machine/ssh.scm (deploy-managed-host)[eval/error-handling]: Return two values in the standard case. Ludovic Courtès2021-06-031-1/+2
* gnu: Add fit-sne.•••* gnu/packages/bioinformatics.scm (fit-sne): New variable. Ricardo Wurmus2021-06-031-0/+63
* gnu: r-with-tests: Use patched texlive-amsfonts.•••See commit 75af43162e58a0b3fdc804963809ecb801fb81b7. * gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Replace texlive-amsfonts with texlive-amsfonts/patched. Lars-Dominik Braun2021-06-031-1/+1
* gnu: openshot: Use free font.•••* gnu/packages/video.scm (openshot)[inputs]: Use font-dejavu. [patch-font-location]: Adjust accordingly. Leo Prikler2021-06-031-3/+4
* gnu: Remove font-ubuntu.•••The Ubuntu Font License has not been approved by the FSF and is considered non-free by Debian and Fedora, see <https://bugs.gnu.org/48802>. * gnu/packages/fonts.scm (font-ubuntu): Removed variable. Leo Prikler2021-06-031-24/+0
* gnu: Add legit.•••* gnu/packages/lisp-xyz.scm (cl-legit, ecl-legit, sbcl-legit): New variables. Pierre Neidhardt2021-06-031-0/+35
* gnu: Add simple-inferiors.•••* gnu/packages/lisp-xyz.scm (cl-simple-inferiors, ecl-simple-inferiors, sbcl-simple-inferiors): New variables. Pierre Neidhardt2021-06-031-0/+34
* gnu: curl: Update to 7.77.0 [fixes CVE-2021-{22897,22898,22901}].•••* gnu/packages/curl.scm (curl/fixed): Replace with ... (curl-7.77.0): ... new variable. (curl)[replacement]: Use curl-7.77.0. Leo Famulari2021-06-021-4/+4
* gnu: expat: Replace with 2.4.1 [fixes CVE-2013-0340].•••* gnu/packages/xml.scm (expat-2.4.1): New variable. (expat)[replacement]: New field. Co-authored-by: Leo Famulari <leo@famulari.name> Marius Bakke2021-06-021-1/+20
* gnu: Add emacs-org-pandoc-import.•••* gnu/packages/emacs-xyz.scm (emacs-org-pandoc-import): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Xinglu Chen2021-06-021-0/+37
* gnu: pioneer: Build with model files.•••Fixes <https://bugs.gnu.org/48686>. * gnu/packages/games.scm (pioneer)[arguments]: Add make-flags for building with model files. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Diego Nicola Barbato2021-06-021-1/+2
* gnu: r-robustbase: Update to 0.93-8.•••* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-8. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-deoptimr: Update to 1.0-9.•••* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-9. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-beeswarm: Update to 0.4.0.•••* gnu/packages/statistics.scm (r-beeswarm): Update to 0.4.0. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-fastcluster: Update to 1.2.3.•••* gnu/packages/statistics.scm (r-fastcluster): Update to 1.2.3. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-matrixstats: Update to 0.59.0.•••* gnu/packages/statistics.scm (r-matrixstats): Update to 0.59.0. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-e1071: Update to 1.7-7.•••* gnu/packages/statistics.scm (r-e1071): Update to 1.7-7. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-rcpparmadillo: Update to 0.10.5.0.0.•••* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.5.0.0. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-rversions: Update to 2.1.1.•••* gnu/packages/statistics.scm (r-rversions): Update to 2.1.1. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-formatr: Update to 1.11.•••* gnu/packages/statistics.scm (r-formatr): Update to 1.11. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-mgcv: Update to 1.8-36.•••* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-36. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-matrix: Update to 1.3-4.•••* gnu/packages/statistics.scm (r-matrix): Update to 1.3-4. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-textshape: Update to 1.7.3.•••* gnu/packages/cran.scm (r-textshape): Update to 1.7.3. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-calculus: Update to 0.3.1.•••* gnu/packages/cran.scm (r-calculus): Update to 0.3.1. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-seurat: Update to 4.0.2.•••* gnu/packages/cran.scm (r-seurat): Update to 4.0.2. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-parsnip: Update to 0.1.6.•••* gnu/packages/cran.scm (r-parsnip): Update to 0.1.6. [propagated-inputs]: Add r-lifecycle. Ricardo Wurmus2021-06-021-2/+3
* gnu: r-clusterr: Update to 1.2.5.•••* gnu/packages/cran.scm (r-clusterr): Update to 1.2.5. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-rsconnect: Update to 0.8.18.•••* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.18. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-forecast: Update to 8.15.•••* gnu/packages/cran.scm (r-forecast): Update to 8.15. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-archivist: Update to 2.3.6.•••* gnu/packages/cran.scm (r-archivist): Update to 2.3.6. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-biclust: Update to 2.0.3.•••* gnu/packages/cran.scm (r-biclust): Update to 2.0.3. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-actuar: Update to 3.1-4.•••* gnu/packages/cran.scm (r-actuar): Update to 3.1-4. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-gdina: Update to 2.8.7.•••* gnu/packages/cran.scm (r-gdina): Update to 2.8.7. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-parameters: Update to 0.14.0.•••* gnu/packages/cran.scm (r-parameters): Update to 0.14.0. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-leiden: Update to 0.3.8.•••* gnu/packages/cran.scm (r-leiden): Update to 0.3.8. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-plot3d: Update to 1.4.•••* gnu/packages/cran.scm (r-plot3d): Update to 1.4. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-dalex: Update to 2.2.1.•••* gnu/packages/cran.scm (r-dalex): Update to 2.2.1. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-spdep: Update to 1.1-8.•••* gnu/packages/cran.scm (r-spdep): Update to 1.1-8. [source]: Remove generated files, including Rmarkdown files whose outputs conflict with the main Rmarkdown file. Ricardo Wurmus2021-06-021-8/+20
* gnu: r-tidytree: Update to 0.3.4.•••* gnu/packages/cran.scm (r-tidytree): Update to 0.3.4. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-ks: Update to 1.13.1.•••* gnu/packages/cran.scm (r-ks): Update to 1.13.1. [propagated-inputs]: Add r-pracma. Ricardo Wurmus2021-06-021-3/+4
* gnu: r-weights: Update to 1.0.2.•••* gnu/packages/cran.scm (r-weights): Update to 1.0.2. [propagated-inputs]: Add r-lme4. Ricardo Wurmus2021-06-021-4/+4
* gnu: r-mvabund: Update to 4.1.12.•••* gnu/packages/cran.scm (r-mvabund): Update to 4.1.12. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-sjplot: Update to 2.8.8.•••* gnu/packages/cran.scm (r-sjplot): Update to 2.8.8. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-effectsize: Update to 0.4.5.•••* gnu/packages/cran.scm (r-effectsize): Update to 0.4.5. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-bayestestr: Update to 0.10.0.•••* gnu/packages/cran.scm (r-bayestestr): Update to 0.10.0. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-emmeans: Update to 1.6.1.•••* gnu/packages/cran.scm (r-emmeans): Update to 1.6.1. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-manipulatewidget: Update to 0.11.0.•••* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.11.0. [propagated-inputs]: Add r-shinyjs. [native-inputs]: Add r-knitr. Ricardo Wurmus2021-06-021-2/+5
* gnu: r-insight: Update to 0.14.1.•••* gnu/packages/cran.scm (r-insight): Update to 0.14.1. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-rdpack: Update to 2.1.2.•••* gnu/packages/cran.scm (r-rdpack): Update to 2.1.2. Ricardo Wurmus2021-06-021-2/+2
* gnu: r-fansi: Update to 0.5.0.•••* gnu/packages/cran.scm (r-fansi): Update to 0.5.0. Ricardo Wurmus2021-06-021-2/+2
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