| Commit message (Expand) | Author | Age | Files | Lines |
|---|
| * | gnu: Add r-pore.•••* gnu/packages/bioinformatics.scm (r-pore): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| pimi | 2018-09-21 | 1 | -0/+29 |
| * | gnu: hdf5-parallel-openmpi: Really enable parallel build.•••This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set
in the file H5pubconf.h.
* gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add
the "--enable-parallel" flag to the list of configure flags. Remove
the incompatible "--enable-cxx" flag. Add 'mpi-setup' phase.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
| Paul Garlick | 2018-09-21 | 1 | -2/+5 |
| * | gnu: hdf5: Allow for absence of utility script.•••* gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split'
phase to check for existence of h5fc script.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul Garlick | 2018-09-21 | 1 | -2/+5 |
| * | gnu: rust: Remove unused "localstatedir" setting.•••* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove
unused "localstatedir" setting.
| Danny Milosavljevic | 2018-09-21 | 1 | -1/+0 |
| * | gnu: libfilezilla: Update to 0.13.2.•••* gnu/packages/ftp.scm (libfilezilla): Update to 0.13.2.
[source]: Use HTTPS.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -3/+3 |
| * | gnu: python-pyparsing: Update home page.•••* gnu/packages/python.scm (python-pyparsing)[home-page]: Update.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -1/+1 |
| * | gnu: emacs-mu4e-conversation: Fix typo in description.•••* gnu/packages/emacs.scm (emacs-mu4e-conversation)[description]:
Fix 'correspondant' typo.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -2/+2 |
| * | gnu: kodi: Use INVOKE.•••* gnu/packages/kodi.scm (kodi)[arguments]: Substitute INVOKE for SYSTEM*.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -2/+2 |
| * | gnu: crossguid: Use INVOKE.•••* gnu/packages/kodi.scm (crossguid)[arguments]: Substitute INVOKE for SYSTEM*.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -11/+12 |
| * | gnu: icecat: Update to 60.2.0-gnu1 (pre-release).•••* gnu/packages/gnuzilla.scm (icecat): Update to 60.2.0-gnu1.
[source]: Download pre-release from alpha.gnu.org. Remove obsolete patches.
Comment out the code to delete the bundled copies of libevent, cairo,
harfbuzz, and graphite2.
[inputs]: Use the latest ffmpeg. Comment out libevent, cairo, harfbuzz, and
graphite2.
[native-inputs]: Add rust and cargo.
[arguments]: Remove --enable-gio and --disable-gnomeui. Add --disable-stylo.
Comment out --with-system-{libevent,harfbuzz,graphite2}, --enable-system-cairo.
Import %cargo-build-system-modules. Add 'patch-cargo-checksums' phase.
* gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch,
gnu/packages/patches/icecat-bug-1413868-pt1.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
| Mark H Weaver | 2018-09-21 | 4 | -1217/+49 |
| * | gnu: libvpx: Add upstream security fix.•••* gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (libvpx)[source]: Add patch.
| Mark H Weaver | 2018-09-21 | 3 | -1/+37 |
| * | gnu: python-paramiko: Update to 2.4.2 [security fixes].•••* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.4.2.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -2/+2 |
| * | gnu: python-paramiko: Use HTTPS home page.•••* gnu/packages/python-crypto.scm (python-paramiko)[home-page]: Use HTTPS.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -1/+1 |
| * | gnu: python-rencode: Update to 1.0.5.•••* gnu/packages/python.scm (python-rencode): Update to 1.0.5.
[arguments]: Add a 'delete-bogus-test' phase.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -2/+11 |
| * | gnu: python-hdf4: Use INVOKE.•••* gnu/packages/python.scm (python-hdf4)[arguments]: Substitute INVOKE
for SYSTEM*.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -2/+2 |
| * | gnu: s6: Update to 2.7.2.1.•••* gnu/packages/skarnet.scm (s6): Update to 2.7.2.1.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -2/+2 |
| * | gnu: perl-xml-compile: Update to 1.60.•••* gnu/packages/xml.scm (perl-xml-compile): Update to 1.60.
[propagated-inputs]: Add perl-carp, perl-scalar-list-utils, and
perl-types-serialiser.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -4/+7 |
| * | gnu: emacs-orgalist: Update to 1.9.•••* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.9.
| Nicolas Goaziou | 2018-09-21 | 1 | -2/+2 |
| * | gnu: openscenegraph: Update to 3.6.3.•••* gnu/packages/graphics.scm (openscenegraph): Update to 3.6.3.
[source]: Use GIT-FILE-NAME.
[inputs]: Remove unused pth and qtbase.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -5/+3 |
| * | gnu: python-pydot: Update to 1.2.4.•••* gnu/packages/graphviz.scm (python-pydot): Update to 1.2.4.
[arguments]: Run the test suite.
[native-inputs]: Add python-chardet.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -4/+5 |
| * | Add 'GNU Guix' comment to all (gnu packages) headers.•••* gnu/packages/debian.scm, gnu/packages/syndication.scm: Add comments.
| Tobias Geerinckx-Rice | 2018-09-21 | 2 | -0/+6 |
| * | gnu: ubuntu-keyring: Update to 2018.09.18.1.•••* gnu/packages/debian.scm (ubuntu-keyring): Update to 2018.09.18.1.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -2/+2 |
| * | gnu: perl-dbd-mysql: Update to 4.048.•••* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
| Tobias Geerinckx-Rice | 2018-09-21 | 1 | -3/+3 |
| * | gnu: rust: Work around mtime bug in rust build helpers.•••* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[fix-mtime-bug]:
Delete.
[reset-timestamps-after-changes]: Modify.
(rust-1.24): Don't delete "fix-mtime-bug" since now it doesn't ever
get created.
| Danny Milosavljevic | 2018-09-21 | 1 | -13/+4 |
| * | gnu: rust@1.20.0: Fix tests.•••* gnu/packages/rust.scm (rust-1.23)[arguments]<#:phases>
[patch-cargo-tests, ignore-glibc-2.27-incompatible-test,fix-mtime-bug]: Move
to...
(rust-1.20): ... here.
| Danny Milosavljevic | 2018-09-21 | 1 | -28/+29 |
| * | gnu: linux-libre: Update to 4.18.9.•••* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.9.
(%linux-libre-hash): Update hash.
| Mark H Weaver | 2018-09-20 | 1 | -2/+2 |
| * | gnu: linux-libre@4.14: Update to 4.14.71.•••* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.71.
(%linux-libre-4.14-hash): Update hash.
| Mark H Weaver | 2018-09-20 | 1 | -2/+2 |
| * | gnu: linux-libre@4.9: Update to 4.9.128.•••* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.128.
| Mark H Weaver | 2018-09-20 | 1 | -2/+2 |
| * | gnu: linux-libre@4.4: Update to 4.4.157.•••* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.157.
| Mark H Weaver | 2018-09-20 | 1 | -2/+2 |
| * | gnu: qbittorrent: Update to 4.1.3.•••* gnu/packages/bittorrent.scm (qbittorrent): Update to 4.1.3.
[inputs]: Use python-wrapper instead of python.
Signed-off-by: Leo Famulari <leo@famulari.name>
| fis trivial | 2018-09-20 | 1 | -3/+3 |
| * | gnu: gprolog: Update to 1.4.5.•••* gnu/packages/gprolog.scm (gprolog): Update to 1.4.5.
[source]: Add an alternate source URL.
Signed-off-by: Leo Famulari <leo@famulari.name>
| fis trivial | 2018-09-20 | 1 | -8/+11 |
| * | gnu: rsem: Update to 1.3.1.•••* gnu/packages/bioinformatics.scm (rsem): Update to 1.3.1.
[source]: Fetch from git; remove patch; delete bundled samtools.
[arguments]: Pass make flags; adjust phases.
[inputs]: Remove ncurses and samtools-0.1; add htslib-1.3.
* gnu/packages/patches/rsem-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Ricardo Wurmus | 2018-09-20 | 3 | -722/+52 |
| * | gnu: ghc-pandoc-citeproc: Update to 0.14.3.1.•••* gnu/packages/haskell.scm (ghc-pandoc-citeproc): Update to 0.14.3.1.
| Ricardo Wurmus | 2018-09-20 | 1 | -2/+2 |
| * | gnu: ghc-xml-conduit: Update to 1.8.0.1.•••* gnu/packages/haskell.scm (ghc-xml-conduit): Update to 1.8.0.1.
[inputs]: Add ghc-doctest.
| Ricardo Wurmus | 2018-09-20 | 1 | -2/+3 |
| * | gnu: python2-scikit-learn: Fix check phase.•••* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]:
Override check phase to disable broken tests and pass environment variables.
| Ricardo Wurmus | 2018-09-20 | 1 | -1/+18 |
| * | gnu: Add r-parmigene.•••* gnu/packages/cran.scm (r-parmigene): New variable.
| Ricardo Wurmus | 2018-09-20 | 1 | -0/+20 |
| * | gnu: Add emacs-dired-sidebar.•••* gnu/packages/emacs.scm (emacs-dired-sidebar): New public variable.
| Marius Bakke | 2018-09-20 | 1 | -0/+22 |
| * | gnu: eolie: Update home page.•••* gnu/packages/gnome.scm (eolie)[home-page]: Set to wiki.gnome.org/Apps/Eolie.
| Marius Bakke | 2018-09-20 | 1 | -1/+1 |
| * | gnu: services: Add iptables service.•••* gnu/services/networking.scm (<iptables-configuration>): New record type.
(iptables-service-type): New variable.
* gnu/tests/networking.scm (run-iptables-test): New procedure.
(%test-iptables): New variable.
* doc/guix.texi (Networking Services): Document it.
| Arun Isaac | 2018-09-20 | 2 | -2/+183 |
| * | gnu: u-boot: Use HTTPS home page.•••* gnu/packages/bootloaders.scm (u-boot)[home-page]: Use HTTPS.
| Tobias Geerinckx-Rice | 2018-09-20 | 1 | -1/+1 |
| * | gnu: ccid: Update to 1.4.30.•••* gnu/packages/security-token.scm (ccid): Update to 1.4.30.
| Tobias Geerinckx-Rice | 2018-09-20 | 1 | -3/+3 |
| * | gnu: opusfile: Update to 0.11.•••* gnu/packages/xiph.scm (opusfile): Update to 0.11.
| Tobias Geerinckx-Rice | 2018-09-20 | 1 | -2/+2 |
| * | Use INVOKE in (gnu packages xdisorg).•••* gnu/packages/xdisorg.scm (scrot, unclutter, xautolock, nxbelld)
[arguments]: Use INVOKE.
| Tobias Geerinckx-Rice | 2018-09-20 | 1 | -9/+7 |
| * | Use INVOKE in (gnu packages shells).•••* gnu/packages/shells.scm (mksh)[arguments]: Use INVOKE...
(scsh)[arguments]: ...and also return #t from all phases.
| Tobias Geerinckx-Rice | 2018-09-20 | 1 | -3/+4 |
| * | gnu: Use INVOKE & return #t from Ruby package phases.•••* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from
all phases.
* gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute
INVOKE for SYSTEM*.
* gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate)
(ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins)
(ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure)
(ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard)
(ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers)
(ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer)
(ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery)
(ruby-rc4, ruby-concurrent)[arguments]: Likewise.
| Tobias Geerinckx-Rice | 2018-09-20 | 3 | -46/+44 |
| * | gnu: ruby-heredoc-unindent: Fix typo in description.•••* gnu/packages/ruby.scm (ruby-heredoc-unindent)[description]: Fix typo.
| Tobias Geerinckx-Rice | 2018-09-20 | 1 | -1/+1 |
| * | Use INVOKE in (gnu packages telephony).•••* gnu/packages/telephony.scm (libiax2, mumble)[arguments]: Use INVOKE.
| Tobias Geerinckx-Rice | 2018-09-20 | 1 | -23/+23 |
| * | gnu: gourmet: Use HTTPS home page.•••* gnu/packages/nutrition.scm (gourmet)[home-page]: Use HTTPS.
| Tobias Geerinckx-Rice | 2018-09-20 | 1 | -1/+1 |
| * | gnu: sg3-utils: Update to 1.44.•••* gnu/packages/scsi.scm (sg3-utils): Update to 1.44.
| Tobias Geerinckx-Rice | 2018-09-20 | 1 | -2/+2 |
| * | gnu: shotwell: Update to 0.28.4.•••* gnu/packages/gnome.scm (shotwell): Update to 0.28.4.
| Leo Famulari | 2018-09-19 | 1 | -2/+2 |
