| Commit message (Expand) | Author | Age | Files | Lines |
|---|
| * | gnu: r-graph: Update to 1.52.0.•••* gnu/packages/bioinformatics.scm (r-graph): Update to 1.52.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-go-db: Update to 3.4.0.•••* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-genomicfeatures: Update to 1.26.0.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-rtracklayer: Update to 1.34.0.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-genomicalignments: Update to 1.10.0.•••* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.10.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-summarizedexperiment: Update to 1.4.0.•••* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.4.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-rsamtools: Update to 1.26.1.•••* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-biostrings: Update to 2.42.0.•••* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-biocparallel: Update to 1.8.0.•••* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-biomart: Update to 2.30.0.•••* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-annotationdbi: Update to 1.36.0.•••* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-biobase: Update to 2.34.0.•••* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-genomicranges: Update to 1.26.1.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1.
[propagated-inputs]: Add r-iranges, r-s4vectors.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+4 |
| * | gnu: r-xvector: Update to 0.14.0.•••* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-limma: Update to 3.30.0.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-variantannotation: Update to 1.20.0.•••* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+8 |
| * | gnu: r-edger: Update to 3.16.0.•••* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0.
[propagated-inputs]: Add r-locfit.
| Ricardo Wurmus | 2016-10-26 | 1 | -3/+4 |
| * | gnu: r-genomeinfodb: Update to 1.10.0.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-iranges: Update to 2.8.0.•••* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-s4vectors: Update to 0.12.0.•••* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-dnacopy: Update to 1.48.0.•••* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-biocinstaller: Update to 1.24.0.•••* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-biocgenerics: Update to 0.20.0.•••* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-grohmm: Update to 1.8.0.•••* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-systempiper: Update to 1.8.1.•••* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-shortread: Update to 1.32.0.•••* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-gostats: Update to 2.40.0.•••* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-category: Update to 2.40.0.•••* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-gseabase: Update to 1.36.0.•••* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-rbgl: Update to 1.50.0.•••* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.50.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-annotationforge: Update to 1.16.0.•••* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.0.
[propagated-inputs]: Add r-rcurl.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+3 |
| * | gnu: r-deseq2: Update to 1.14.0.•••* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-genefilter: Update to 1.56.0.•••* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.56.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-geneplotter: Update to 1.52.0.•••* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-annotate: Update to 1.52.0.•••* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: Add r-kernsmooth.•••* gnu/packages/statistics.scm (r-kernsmooth): New variable.
| Ricardo Wurmus | 2016-10-26 | 1 | -0/+24 |
| * | gnu: emacs-emms-player-mpv: Update to 0.0.10.•••* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.10.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: elfutils: Update to 0.167.•••* gnu/packages/elf.scm (elfutils): Update to 0.167.
| Leo Famulari | 2016-10-25 | 1 | -2/+2 |
| * | gnu: gtk+-2: Update to 2.24.31 [fixes CVE-2013-7447].•••* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.31.
| Leo Famulari | 2016-10-25 | 1 | -2/+2 |
| * | gnu: mupdf: Fix CVE-2016-8674.•••* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf): Use it.
| Kei Kebreau | 2016-10-25 | 3 | -1/+169 |
| * | gnu: coda: Remove bundled libraries.•••* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Thomas Danckaert | 2016-10-25 | 3 | -2/+59 |
| * | svg: Autoload Guile-RSVG and Guile-Cairo.•••Fixes compilation by 'guix pull' where Guile-{RSVG,Cairo} are missing.
Reported by Efraim Flashner.
* gnu/build/svg.scm: Use 'module-autoload!' rather than 'module-use!'.
| Ludovic Courtès | 2016-10-25 | 1 | -3/+5 |
| * | gnu: linux-libre@4.1: Update to 4.1.35.•••* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35. Remove
patch.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Mark H Weaver | 2016-10-24 | 3 | -106/+3 |
| * | system: grub: Use Guile-{RSVG,Cairo} instead of Inkscape + ImageMagick.•••Based on a suggestion by Andy Wingo at
<https://lists.gnu.org/archive/html/guix-devel/2015-08/msg00753.html>.
* gnu/build/svg.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/system/grub.scm (svg->png): Add #:width and #:height. Rewrite to
use (gnu build svg).
(resize-image): Remove.
(grub-background-image): Adjust accordingly.
| Ludovic Courtès | 2016-10-25 | 3 | -22/+89 |
| * | gnu: Add coda.•••* gnu/packages/maths.scm (coda): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Thomas Danckaert | 2016-10-24 | 1 | -0/+31 |
| * | gnu: Add hdf-eos2.•••* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Thomas Danckaert | 2016-10-24 | 5 | -0/+447 |
| * | gnu: Add guile-bytestructures•••* gnu/packages/guile.scm (guile-bytestructures): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Amirouche | 2016-10-24 | 1 | -0/+81 |
| * | services: nginx: Virtual hosts are first-class configuration items.•••* gnu/services/web.scm (<nginx-vhost-configuration>): New record type.
(config-domain-strings): New procedure.
(config-index-strings): New procedure.
(default-nginx-vhost-config): New procedure.
(default-nginx-config): Add vhost support and temporary directories
(nginx-activation): Create temporary directories
(nginx-service): Add vhost-list key.
* doc/guix.texi (Web Services): Document 'nginx-vhost-configuration'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Julien Lepiller | 2016-10-24 | 1 | -4/+88 |
| * | gnu: efl: Update to 1.18.2.•••* gnu/packages/enlightenment.scm (efl): Update to 1.18.2.
| Efraim Flashner | 2016-10-24 | 1 | -2/+2 |
| * | gnu: red-eclipse: Update to 1.5.6.•••* gnu/packages/games.scm (red-eclipse): Update to 1.5.6.
[arguments]: Adjust phases.
| Kei Kebreau | 2016-10-24 | 1 | -35/+35 |
