| Commit message (Expand) | Author | Age | Files | Lines |
|---|
| * | gnu: r-curl: Update to 2.2.•••* gnu/packages/web.scm (r-curl): Update to 2.2.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-seqinr: Update to 3.3-3.•••* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-rcpparmadillo: Update to 0.7.500.0.0.•••* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
| Ricardo Wurmus | 2016-10-26 | 2 | -4/+4 |
| * | gnu: armadillo: Update to 7.500.0.•••* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -3/+3 |
| * | gnu: r-rmarkdown: Update to 1.1.•••* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+4 |
| * | gnu: bioperl-minimal: Update to 1.7.0.•••* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -4/+8 |
| * | gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a.•••The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.
This is a follow-up to 47a04fca999b91309d196afc9ebf4d8ac6f2083f.
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
| Marius Bakke | 2016-10-26 | 1 | -42/+41 |
| * | gnu: python-certifi: Update to 2016.8.31.•••* gnu/packages/python.scm (python-certifi): Update to 2016.8.31.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| ng0 | 2016-10-26 | 1 | -2/+2 |
| * | gnu: security-token: Use 'license:' prefix.•••* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix.
(ykclient)[license]: Add prefix.
| Marius Bakke | 2016-10-26 | 1 | -3/+3 |
| * | gnu: yubico.scm: Rename to security-token.scm.•••* gnu/packages/yubico.scm: Delete file.
* gnu/packages/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
| Marius Bakke | 2016-10-26 | 2 | -2/+2 |
| * | gnu: offlineimap: Install documentation.•••* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and
libxslt.
[arguments]: Add phases 'build-documentation' and
'install-documentation' to build and install manpages. Also remove
unneeded key 'inputs' from 'wrap-binary' phase.
| Marius Bakke | 2016-10-26 | 1 | -2/+20 |
| * | gnu: notmuch: Update to 0.23.1.•••* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
| Marius Bakke | 2016-10-26 | 3 | -53/+2 |
| * | gnu: vlc: Add x265 support.•••* gnu/packages/video.scm (vlc)[inputs]: Add x265.
| Efraim Flashner | 2016-10-26 | 1 | -0/+1 |
| * | gnu: gst-plugins-bad: Add x265 support.•••* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add x265.
| Efraim Flashner | 2016-10-26 | 1 | -1/+2 |
| * | gnu: ffmpeg: Add x265 support.•••* gnu/packages/video.scm (ffmpeg)[inputs]: Add x265.
[arguments]: Add '--enable-libx265' flag.
| Efraim Flashner | 2016-10-26 | 1 | -0/+2 |
| * | gnu: Add x265.•••* gnu/packages/video.scm (x265): New variable.
| Efraim Flashner | 2016-10-26 | 1 | -0/+31 |
| * | gnu: Add psyclpc.•••* gnu/packages/psyc.scm (psyclpc): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| ng0 | 2016-10-26 | 1 | -0/+82 |
| * | gnu: opensmtpd: Fix 'license' field.•••* gnu/packages/mail.scm (opensmtpd)[license]: Use LICENSE:OPENSSL, not
OPENSSL.
(opensmtpd-extras)[license]: Likewise.
| Ludovic Courtès | 2016-10-26 | 1 | -3/+3 |
| * | gnu: r-genomationdata: Update to 1.6.0.•••* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.6.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-bamsignals: Update to 1.6.0.•••* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.6.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-rhtslib: Update to 1.6.0.•••* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.6.0.
[native-inputs]: Add autoconf.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+4 |
| * | gnu: r-zlibbioc: Update to 1.20.0.•••* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.20.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-motifrg: Update to 1.18.0.•••* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.18.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-seqlogo: Update to 1.40.0.•••* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.40.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-genomation: Update to 1.6.0.•••* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.6.0.
[propagated-inputs]: Add r-rcpp, r-htslib, r-runit, r-s4vectors.
[inputs]: Add zlib.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+8 |
| * | gnu: r-seqpattern: Update to 1.6.0.•••* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.6.0.
[propagated-inputs]: Add r-kernsmooth.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+3 |
| * | gnu: r-impute: Update to 1.48.0.•••* gnu/packages/bioinformatics.scm (r-impute): Update to 1.48.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-bsgenome: Update to 1.42.0.•••* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.42.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-topgo: Update to 2.26.0.•••* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.26.0.
[propagated-inputs]: Add r-dbi.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+3 |
| * | gnu: r-graph: Update to 1.52.0.•••* gnu/packages/bioinformatics.scm (r-graph): Update to 1.52.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-go-db: Update to 3.4.0.•••* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-genomicfeatures: Update to 1.26.0.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-rtracklayer: Update to 1.34.0.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-genomicalignments: Update to 1.10.0.•••* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.10.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-summarizedexperiment: Update to 1.4.0.•••* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.4.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-rsamtools: Update to 1.26.1.•••* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-biostrings: Update to 2.42.0.•••* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-biocparallel: Update to 1.8.0.•••* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-biomart: Update to 2.30.0.•••* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-annotationdbi: Update to 1.36.0.•••* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-biobase: Update to 2.34.0.•••* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-genomicranges: Update to 1.26.1.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1.
[propagated-inputs]: Add r-iranges, r-s4vectors.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+4 |
| * | gnu: r-xvector: Update to 0.14.0.•••* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-limma: Update to 3.30.0.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-variantannotation: Update to 1.20.0.•••* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+8 |
| * | gnu: r-edger: Update to 3.16.0.•••* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0.
[propagated-inputs]: Add r-locfit.
| Ricardo Wurmus | 2016-10-26 | 1 | -3/+4 |
| * | gnu: r-genomeinfodb: Update to 1.10.0.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-iranges: Update to 2.8.0.•••* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-s4vectors: Update to 0.12.0.•••* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
| * | gnu: r-dnacopy: Update to 1.48.0.•••* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
| Ricardo Wurmus | 2016-10-26 | 1 | -2/+2 |
