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| * gnu: ruby-term-ansicolor: Fix test for Ruby 2.5.•••* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test phase to fix a test that fails under Ruby 2.5. Christopher Baines2018-10-051-0/+5
| * gnu: ruby-shindo: Remove -rubygems flags.•••These have been removed in Ruby 2.5. * gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to also remove the -rubygems flags. Christopher Baines2018-10-051-6/+9
| * gnu: bioruby: Update to 1.5.2.•••This works with Ruby 2.5. * gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2. Christopher Baines2018-10-051-2/+2
| * gnu: gnucash-docs: Update to 3.3.•••The documentation on SourceForge is now located in the same directory as the source code. * gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3. Kei Kebreau2018-10-051-5/+3
| * gnu: gnucash: Update to 3.3.•••* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnucash.scm (gnucash): Update to 3.3. [source]: Add patch. [arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and 'glib-or-gtk-wrap' phases. Kei Kebreau2018-10-054-13/+81
| * gnu: Add bastet.•••* gnu/packages/games.scm (bastet): New public variable. * gnu/packages/patches/bastet-change-source-of-unordered_set.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice2018-10-053-0/+105
| * gnu: fdroidserver: Update to 1.0.10.•••* gnu/packages/android.scm (fdroidserver): Update to 1.0.10. Tobias Geerinckx-Rice2018-10-051-2/+2
| * gnu: audacity: Don't use unstable tarball.•••* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME. Tobias Geerinckx-Rice2018-10-051-4/+6
| * gnu: filezilla: Update to 3.37.4.•••* gnu/packages/ftp.scm (filezilla): Update to 3.37.4. Tobias Geerinckx-Rice2018-10-051-2/+2
| * gnu: libfilezilla: Update to 0.14.0.•••* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0. Tobias Geerinckx-Rice2018-10-051-2/+2
* | Merge branch 'master' into core-updatesMarius Bakke2018-10-0588-2075/+4727
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| * gnu: samtools-0.1: Adjust to match changes in samtools.•••* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make flags. Ricardo Wurmus2018-10-051-2/+2
| * gnu: deeptools: Update to 3.1.2.•••* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2. [source]: Fetch from git. [arguments]: Delete reset-gzip-timestamps phase. [inputs]: Add python-plotly. Ricardo Wurmus2018-10-051-7/+14
| * gnu: python-pysam: Update to 0.15.1.•••* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1. [source]: Fetch from git. [arguments]: Delete tests requiring internet access; use "invoke". [inputs]: Add curl. Ricardo Wurmus2018-10-051-26/+29
| * gnu: python-plotly: Add python-pandas to inputs.•••* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add python-pandas. Ricardo Wurmus2018-10-051-0/+1
| * gnu: bcftools: Update to 1.9.•••* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9. [arguments]: Remove obsolete make flags. Ricardo Wurmus2018-10-051-18/+9
| * gnu: samtools: Update to 1.9.•••* gnu/packages/bioinformatics.scm (samtools): Update to 1.9. [origin]: Remove bundled htslib sources. [arguments]: Remove obsolete make-flags. Ricardo Wurmus2018-10-051-4/+8
| * gnu: htslib: Update to 1.9.•••* gnu/packages/bioinformatics.scm (htslib): Update to 1.9. Ricardo Wurmus2018-10-051-2/+2
| * gnu: icecat: Add fixes from mozilla-esr60 [security fixes].•••Includes fixes for CVE-2018-12386 and CVE-2018-12387. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr60 repository. Mark H Weaver2018-10-041-1/+17
| * gnu: linux-libre: Update to 4.18.12.•••* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12. (%linux-libre-hash): Update hash. Mark H Weaver2018-10-041-2/+2
| * gnu: linux-libre@4.14: Update to 4.14.74.•••* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74. (%linux-libre-4.14-hash): Update hash. Mark H Weaver2018-10-041-2/+2
| * gnu: linux-libre@4.9: Update to 4.9.131.•••* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131. Mark H Weaver2018-10-041-2/+2
| * gnu: petsc-openmpi: Configure with support for MUMPS solver.•••* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis, mumps-openmpi, scalapack and pt-scotch. [arguments]: Add "--with-PACKAGENAME=1" flags. Move 'mpi-setup' phase ahead of 'configure' phase. Signed-off-by: Leo Famulari <leo@famulari.name> Paul Garlick2018-10-041-5/+12
| * gnu: hiawatha: Set sane run-time directory defaults.•••* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default directories. Replace the 'remove-empty-dirs' phase with a 'install-no-empty-directories' one. Tobias Geerinckx-Rice2018-10-041-7/+10
| * gnu: hwloc: Update to 2.0.2.•••* gnu/packages/mpi.scm (hwloc): Update to 2.0.2. Tobias Geerinckx-Rice2018-10-041-2/+3
| * gnu: Add nsd.•••* gnu/packages/dns.scm (nsd): New public variable. Tobias Geerinckx-Rice2018-10-041-0/+71
| * gnu: guile-next: Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779.•••* gnu/packages/guile.scm (guile-next): Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779. David Thompson2018-10-041-3/+3
| * gnu: guile-next: Add the correct native search paths.•••* gnu/packages/guile.scm (guile-next): Add native search paths for version 3.0. David Thompson2018-10-041-1/+9
| * gnu: hiawatha: Support HTTP/2.•••* gnu/packages/web.sck (hiawatha)[arguments]: USE_SYSTEM_NGHTTP2 to ENABLE_HTTP2. [inputs]: Add nghttp2:lib. Tobias Geerinckx-Rice2018-10-041-4/+7
| * gnu: hiawatha: Update to 10.8.3.•••* gnu/packages/web.scm (hiawatha): Update to 10.8.3. [source]: Also delete bundled copy of nghttp2. [inputs]: Use mbedtls-for-hiawatha instead of vanilla mbedtls-apache. * gnu/packages/tls.scm (mbedtls-for-hiawatha): New public variable. Tobias Geerinckx-Rice2018-10-042-7/+26
| * gnu: mbedtls-apache: Update to 2.13.0 [security fixes].•••* gnu/packages/tls.scm (mbedtls-apache): Update to 2.13.0. [native-inputs]: Add python. Tobias Geerinckx-Rice2018-10-041-3/+4
| * gnu: geos: Update to 3.7.0.•••* gnu/packages/geo.scm (geos): Update to 3.7.0. Arun Isaac2018-10-041-2/+2
| * gnu: hexedit: Update to 1.4.2.•••* gnu/packages/hexedit.scm (hexedit): Update to 1.4.2. [source]: Use the author's more up-to-date git repository. [native-inputs]: Add autoconf and automake. Tobias Geerinckx-Rice2018-10-041-7/+16
| * gnu: html-xml-utils: Update to 7.7.•••* gnu/packages/xml.scm (html-xml-utils): Update to 7.7. Tobias Geerinckx-Rice2018-10-041-2/+2
| * gnu: perl-xml-feed: Update to 0.54.•••* gnu/packages/xml.scm (perl-xml-feed): Update to 0.54. Tobias Geerinckx-Rice2018-10-041-3/+3
| * gnu: guix: Update to 1d0be47.•••* gnu/packages/package-management.scm (guix): Update to 1d0be47. Ludovic Courtès2018-10-041-3/+3
| * gnu: escpr: Update to 1.6.30.•••* gnu/packages/cups.scm (escpr): Update to 1.6.30. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Diego Nicola Barbato2018-10-041-5/+5
| * gnu: opencv: Update to 3.4.3.•••[[PGP Signed Part:Good signature from BF286CB6593E5FFD Björn Höfling <bjoern.hoefling@bjoernhoefling.de> (trust undefined) created at 2018-10-03T22:28:20+0200 using DSA]] * gnu/packages/image-processing.scm (opencv): Update to 3.4.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Björn Höfling2018-10-041-4/+4
| * gnu: r-acclma: Fix uses of @acronym in description.•••* gnu/packages/cran.scm (r-acclma)[description]: Fix order of arguments to @acronym. The wrong order was causing 'stexi->shtml' to fail (match error). Ludovic Courtès2018-10-041-6/+6
| * services: rottlog: Use command strings in the mcron jobs.•••* gnu/services/admin.scm (default-jobs): Remove the lambda around "/…/bin/rottlog" to make "herd schedule mcron" more transparent (otherwise it just says "Lambda function"). Ludovic Courtès2018-10-041-4/+2
| * gnu: mpv: Update to 0.29.1.•••* gnu/packages/video.scm (mpv): Update to 0.29.1. Rutger Helling2018-10-041-2/+2
| * gnu: retroarch: Update to 1.7.5.•••* gnu/packages/emulators.scm (retroarch): Update to 1.7.5. Tobias Geerinckx-Rice2018-10-041-2/+2
| * gnu: retroarch: Don't use unstable tarball.•••* gnu/packages/emulators.scm (retroarch)[source]: Use GIT-FETCH and GIT-FILE-NAME. Tobias Geerinckx-Rice2018-10-041-5/+6
| * gnu: ephoto: Fix typos in description.•••* gnu/packages/enlightenment.scm (ephoto)[description]: Fix typos. Wrap at 80 columns. Tobias Geerinckx-Rice2018-10-041-5/+8
| * gnu: perl-string-copyright: Update to 0.003006.•••* gnu/packages/license.scm (perl-string-copyright): Update to 0.003006. Tobias Geerinckx-Rice2018-10-041-2/+2
| * gnu: rpm: Update to 4.14.2.•••* gnu/packages/package-management.scm (rpm): Update to 4.14.2. [arguments]: Rename 'set-nspr-search-path' phase to 'set-nss-library-path' and remove CPATH work-around. Remove obsolete 'fix-rpm-symlinks' phase. [home-page]: Drop www. Tobias Geerinckx-Rice2018-10-041-26/+6
| * gnu: imapfilter: Update to 2.6.12.•••* gnu/packages/mail.scm (imapfilter): Update to 2.6.12. Tobias Geerinckx-Rice2018-10-041-2/+2
| * gnu: imapfilter: Don't use unstable tarball.•••* gnu/packages/mail.scm (imapfilter)[source]: Use GIT-FETCH and GIT-FILE-NAME. Tobias Geerinckx-Rice2018-10-041-7/+6
| * gnu: nickle: Update to 2.82.•••* gnu/packages/nickle.scm (nickle): Update to 2.82. Tobias Geerinckx-Rice2018-10-041-2/+2
| * gnu: ddcutil: Update to 0.9.2.•••* gnu/packages/hardware.scm (ddcutil): Update to 0.9.2. Tobias Geerinckx-Rice2018-10-041-2/+2
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