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* gnu: libhilbert: Remove package.•••This package's source and webpage has disappeared for some time, and upstream projects (e.g. libmesh) seem to be bundling it, so we remove it for now. * gnu/packages/maths.scm (libhilbert): Remove variable. Eric Bavier2017-10-241-22/+0
* gnu: slepc: Update to 3.8.0.•••* gnu/packages/maths.scm (slepc): Update to 3.8.0. Eric Bavier2017-10-241-2/+2
* gnu: petsc: Update to 3.8.0.•••* gnu/packages/maths.scm (petsc): Update to 3.8.0 [native-inputs]: Remove perl, which is no longer needed. Eric Bavier2017-10-241-4/+3
* gnu: bwa: Update to 0.7.17.•••* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.17. Ben Woodcroft2017-10-251-2/+2
* gnu: bwa: Change source URL to GitHub.•••* gnu/packages/bioinformatics.scm (bwa)[source]: Change source URL to GitHub. Ben Woodcroft2017-10-251-2/+3
* gnu: Add perl-moox-options.•••* gnu/packages/perl.scm (perl-moox-options): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+51
* gnu: perl-getopt-long-descriptive: Update to 0.100.•••* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.100. [native-inputs]: Add perl-cpan-meta-check. Ricardo Wurmus2017-10-241-3/+4
* gnu: Add perl-moox-configfromfile.•••* gnu/packages/perl.scm (perl-moox-configfromfile): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+33
* gnu: Add perl-moox-file-configdir.•••* gnu/packages/perl.scm (perl-moox-file-configdir): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+24
* gnu: Add perl-moox-cmd.•••* gnu/packages/perl.scm (perl-moox-cmd): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+32
* gnu: perl-list-moreutils: Update to 0.426.•••* gnu/packages/perl.scm (perl-list-moreutils): Update to 0.426. [arguments]: Work around dotless @INC problem. [native-inputs]: Add perl-test-leaktrace; remove perl-inc-latest and perl-test-writevariants. [propagated-inputs]: Add perl-list-moreutils-xs. Ricardo Wurmus2017-10-241-5/+15
* gnu: Add perl-list-moreutils-xs.•••* gnu/packages/perl.scm (perl-list-moreutils-xs): New variable. Ricardo Wurmus2017-10-241-0/+24
* gnu: Add perl-libintl-perl.•••* gnu/packages/perl.scm (perl-libintl-perl): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+31
* gnu: Add perl-file-configdir.•••* gnu/packages/perl.scm (perl-file-configdir): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+24
* gnu: Add perl-data-record.•••* gnu/packages/perl.scm (perl-data-record): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+27
* gnu: Add perl-data-printer.•••* gnu/packages/perl.scm (perl-data-printer): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+24
* gnu: Add perl-clone-pp.•••* gnu/packages/perl.scm (perl-clone-pp): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+21
* gnu: Add perl-data.•••* gnu/packages/perl.scm (perl-data): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+32
* gnu: gnurl: Update to 7.56.1.•••* gnu/packages/gnunet.scm (gnurl): Update to 7.56.1. Signed-off-by: Leo Famulari <leo@famulari.name> ng02017-10-241-2/+2
* gnu: screen: Update to 4.6.2.•••* gnu/packages/screen.scm (screen): Update to 4.6.2. Efraim Flashner2017-10-241-2/+2
* gnu: mupdf: Fix CVE-2017-{14685,14686,14687}.•••* gnu/packages/patches/mupdf-CVE-2017-14685.patch, gnu/packages/patches/mupdf-CVE-2017-14686.patch, gnu/packages/patches/mupdf-CVE-2017-14687.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/pdf.scm (mupdf)[source]: Use them. Leo Famulari2017-10-245-0/+204
* gnu: icu4c: Fix CVE-2017-14952.•••* gnu/packages/patches/icu4c-CVE-2017-14952.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/icu4c.scm (icu4c)[replacement]: New field. (icu4c-fixed): New variable. Leo Famulari2017-10-243-0/+29
* gnu: syncthing: Split into two outputs.•••* gnu/packages/syncthing.scm (syncthing)[outputs]: New field. [arguments]: Change the 'install' and 'install-docs' phases to install to the two outputs. Leo Famulari2017-10-241-6/+28
* gnu: syncthing: Use install-source? to disable installing the source code.•••* gnu/packages/syncthing.scm (syncthing): Set #:install-source? #f instead of deleting the install-source phase. Leo Famulari2017-10-241-3/+2
* gnu: Add perl-types-path-tiny.•••* gnu/packages/perl.scm (perl-types-path-tiny): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+26
* gnu: Add perl-type-tiny-xs.•••* gnu/packages/perl.scm (perl-type-tiny-xs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+21
* gnu: Add perl-test-taint.•••* gnu/packages/perl.scm (perl-test-taint): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+26
* gnu: Add perl-term-size-any.•••* gnu/packages/perl.scm (perl-term-size-any): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+25
* gnu: Add perl-term-size-perl.•••* gnu/packages/perl.scm (perl-term-size-perl): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+19
* gnu: Add perl-devel-hide.•••* gnu/packages/perl.scm (perl-devel-hide): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+23
* gnu: Add perl-sort-naturally.•••* gnu/packages/perl.scm (perl-sort-naturally): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+21
* gnu: Add perl-proc-invokeeditor.•••* gnu/packages/perl.scm (perl-proc-invokeeditor): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+26
* gnu: Add perl-archive-extract.•••* gnu/packages/compression.scm (perl-archive-extract): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+22
* gnu: Add perl-gnupg-interface.•••* gnu/packages/gnupg.scm (perl-gnupg-interface): New variable. Co-authored-by: Petter <petter@mykolab.ch> Ricardo Wurmus2017-10-241-1/+39
* gnu: borg: Split up the monolithic man page.•••* gnu/packages/backup.scm (borg)[arguments]: Rewrite 'install-docs' phase to install one man page per Borg sub-command. Leo Famulari2017-10-241-4/+4
* gnu: python-docutils: Update to 0.14.•••* gnu/packages/python.scm (python-docutils, python2-docutils): Update to 0.14. Leo Famulari2017-10-241-2/+2
* gnu: Add perl-xml-twig.•••* gnu/packages/xml.scm (perl-xml-twig): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+41
* gnu: curl: Update replacement to 7.56.1 [fixes CVE-2017-1000257].•••* gnu/packages/curl.scm (curl-7.56.0): Rename to ... (curl-7.56.1): ... this. Update to 7.56.1. (curl)[replacement]: Adjust accordingly. Marius Bakke2017-10-241-4/+4
* gnu: claws-mail: Re-enable vcalendar.•••* gnu/packages/mail.scm (claws-mail): Use module (gnu packages calendar). [inputs]: Add libical. Danny Milosavljevic2017-10-241-0/+2
* gnu: git: Update to 2.14.3.•••* gnu/packages/version-control.scm (git): Update to 2.14.3. Marius Bakke2017-10-241-3/+3
* gnu: Add sorcer.•••* gnu/packages/music.scm (sorcer): New variable. Ricardo Wurmus2017-10-241-0/+38
* gnu: Add papagayo.•••* gnu/packages/animation.scm (papagayo): New variable. Ricardo Wurmus2017-10-241-0/+71
* gnu: Add perl-html-tidy.•••* gnu/packages/web.scm (perl-html-tidy): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+38
* gnu: Add tidyp.•••* gnu/packages/web.scm (tidyp): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+26
* gnu: Add perl-lwp-online.•••* gnu/packages/web.scm (perl-lwp-online): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+30
* gnu: Add perl-xml-handler-yawriter.•••* gnu/packages/xml.scm (perl-xml-handler-yawriter): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+21
* gnu: Add perl-xml-sax-writer.•••* gnu/packages/xml.scm (perl-xml-sax-writer): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+25
* gnu: Add perl-xml-filter-buffertext.•••* gnu/packages/xml.scm (perl-xml-filter-buffertext): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+24
* gnu: Add perl-tree-xpathengine.•••* gnu/packages/xml.scm (perl-tree-xpathengine): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+21
* gnu: Add perl-xml-xpathengine.•••* gnu/packages/xml.scm (perl-xml-xpathengine): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Petter2017-10-241-0/+26