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* gnu: Add sbcl-ciel-repl.Konrad Hinsen2024-09-073-0/+101
| | | | | | | | | * gnu/packages/patches/sbcl-clei-repl.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/lisp-xyz.scm (sbcl-ciel-repl): New variable. Change-Id: I85eabe27d35a6d540a634f4121209b59a6c7085b Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: cl-ciel: Update to 0.2.1.Konrad Hinsen2024-09-071-10/+22
| | | | | | | * gnu/packages/lisp-xyz.scm (sbcl-ciel): Update to 0.2.1. Change-Id: Ie0a122ebdba4f9b5bb83275cc349864d0306c080 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: r-clusterprofiler: Update to 4.12.6.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.12.6. Change-Id: Ic504daca8977064884c95da366367762db35d906
* gnu: r-mvtnorm: Update to 1.3-0.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/statistics.scm (r-mvtnorm): Update to 1.3-0. Change-Id: I027362c79be5c8ec392c38ab255bdbbfedfb81dd
* gnu: r-gdtools: Update to 0.4.0.Ricardo Wurmus2024-09-061-8/+3
| | | | | | | * gnu/packages/statistics.scm (r-gdtools): Update to 0.4.0. [propagated-inputs]: Remove r-curl and r-gfonts. Change-Id: I45f6cbbfb305aee304fb8d17ee9b6dec28e2b816
* gnu: r-boot: Update to 1.3-31.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/statistics.scm (r-boot): Update to 1.3-31. Change-Id: I3c5dfecf461dd98ee7114de32d190db5743a6dab
* gnu: r-scatterpie: Update to 0.2.4.Ricardo Wurmus2024-09-061-3/+4
| | | | | | | * gnu/packages/cran.scm (r-scatterpie): Update to 0.2.4. [propagated-inputs]: Add r-yulab-utils. Change-Id: I5a2da6278bb0331dcf6383fe4d2db76c3d28332b
* gnu: r-sem: Update to 3.1-16.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-sem): Update to 3.1-16. Change-Id: I184006d0e93be4a114f0e0850e75c081449c461c
* gnu: r-harmony: Update to 1.2.1.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-harmony): Update to 1.2.1. Change-Id: I38a0f54024b0eb320869c079e412f7ad92e38d25
* gnu: r-ggfun: Update to 0.1.6.Ricardo Wurmus2024-09-061-3/+3
| | | | | | | * gnu/packages/cran.scm (r-ggfun): Update to 0.1.6. [propagated-inputs]: Add r-yulab-utils. Change-Id: I33cbd8ce47b73e605ed4d6f5febd89796344dc82
* gnu: r-nonnest2: Update to 0.5-8.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-nonnest2): Update to 0.5-8. Change-Id: I31b07b93ea946f25c32126b9b1c987d9bf053f3b
* gnu: r-circular: Update to 0.5-1.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-circular): Update to 0.5-1. Change-Id: I0a33b5667eb155a7af0dae9d0c691e4ab97b5b2a
* gnu: r-biocmanager: Update to 1.30.25.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-biocmanager): Update to 1.30.25. Change-Id: I9565f981692c6a4932680e96f016dc9954cb9f60
* gnu: r-afex: Update to 1.4-1.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-afex): Update to 1.4-1. Change-Id: I2263d83ea2d43c6ce2632b8637394b7d63c32af2
* gnu: r-ggeffects: Update to 1.7.1.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-ggeffects): Update to 1.7.1. Change-Id: Ia9fdfd5ac287d9c85ea7b1303e176cb62670a0b2
* gnu: r-slam: Update to 0.1-53.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-slam): Update to 0.1-53. Change-Id: Ifacc47e340dc4c7c5cc00705e661e0ad7d59ed82
* gnu: r-golem: Update to 0.5.1.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-golem): Update to 0.5.1. Change-Id: I4dbe75ad60b944b9f620e38e78ebecd4f055da0b
* gnu: r-insight: Update to 0.20.4.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-insight): Update to 0.20.4. Change-Id: I17b052a82b76c7c0e98d7a1a2c88dbeaf841c93e
* gnu: r-openxlsx: Update to 4.2.7.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-openxlsx): Update to 4.2.7. Change-Id: I8e02c793104ab017e80faf41fa043ac37d53eaf1
* gnu: r-ctrdata: Update to 1.19.2.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-ctrdata): Update to 1.19.2. Change-Id: Ib73a643b49c5ef774622bc50b294cc364a53ffe8
* gnu: r-servr: Update to 0.31.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-servr): Update to 0.31. Change-Id: Ia91b99deb3ca1d3e4a032017aa5d141a54e803d5
* gnu: r-vegan: Update to 2.6-8.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/cran.scm (r-vegan): Update to 2.6-8. Change-Id: Ibcc5edca0109d1abb0c91797c839b9ad38f9f827
* gnu: r-climaemet: Update to 1.4.0.Ricardo Wurmus2024-09-061-3/+4
| | | | | | | * gnu/packages/cran.scm (r-climaemet): Update to 1.4.0. [propagated-inputs]: Add r-xml2. Change-Id: I8a1250894c6daad16f113ec67e5a22543c35d395
* gnu: r-broom-helpers: Update to 1.17.0.Ricardo Wurmus2024-09-061-2/+3
| | | | | | | * gnu/packages/cran.scm (r-broom-helpers): Update to 1.17.0. [propagated-inputs]: Add r-cards. Change-Id: I11f08aa6500d9d88dc32ce49d72939078c4596cf
* gnu: r-valr: Update to 0.8.2.Ricardo Wurmus2024-09-061-2/+2
| | | | | | * gnu/packages/bioconductor.scm (r-valr): Update to 0.8.2. Change-Id: Ief21d6bdf38193d996df513e16ae74350e8ff92c
* gnu: r-archivist: Update to 2.3.8.Ricardo Wurmus2024-09-061-4/+2
| | | | | | | * gnu/packages/cran.scm (r-archivist): Update to 2.3.8. [native-inputs]: Remove r-knitr. Change-Id: I826db8b923c7954aafab2bb922ca814e6b718373
* gnu: r-geometry: Update to 0.5.0.Ricardo Wurmus2024-09-061-3/+3
| | | | | | * gnu/packages/cran.scm (r-geometry): Update to 0.5.0. Change-Id: I8097c44562c17e5892e55529894664ef9f1ea221
* gnu: Add r-cards.Ricardo Wurmus2024-09-061-0/+28
| | | | | | * gnu/packages/cran.scm (r-cards): New variable. Change-Id: I17c61d254407574610f78cb4afd21d8829632922
* gnu: lcsync: Update to 0.3.1.Vagrant Cascadian2024-09-061-2/+2
| | | | * gnu/packages/networking.scm (lcsync): Update to 0.3.1.
* gnu: lcrq: Add compiler optimizations.Vagrant Cascadian2024-09-061-0/+11
| | | | | * gnu/packages/networking.scm (lcrq)[arguments]: Pass compiler optimizations to configure. [phases]: Add 'speedtest phase.
* gnu: lcrq: Update to 0.2.1.Vagrant Cascadian2024-09-061-2/+2
| | | | * gnu/packages/networking.scm (lcrq): Update to 0.2.1.
* gnu: guile-hoot: Update to 0.5.0.David Thompson2024-09-061-2/+2
| | | | | | * gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.5.0. Change-Id: I6f205218eb9b2044378ebbda736407a3a85035b1
* gnu: trealla: Update to 2.55.35.jgart2024-09-061-2/+2
| | | | | | * gnu/packages/prolog.scm (trealla): Update to 2.55.35. Change-Id: Ibdc23c3f443d55a4e2f8c256531b64a97fc42c2f
* gnu: trealla: Update to 2.55.34.jgart2024-09-061-2/+2
| | | | | | * gnu/packages/prolog.scm (trealla): Update to 2.55.34. Change-Id: Ida254b8f5877291cbcf8ac6ccb5e45a2f6d79a7f
* gnu: kmime: Disable testFancyFormat test.Zheng Junjie2024-09-071-0/+5
| | | | | | | | Fixes <issues.guix.gnu.org/73067> * gnu/packages/kde-pim.scm (kmime)[arguments]: Disable testFancyFormat test. Change-Id: Id1b459832a6a0b2d7636855774a1ffaadb1aacba
* gnu: qcoro-qt6: Adjust synopsis.Zheng Junjie2024-09-061-0/+1
| | | | | | | * gnu/packages/qt.scm (qcoro-qt6)[synopsis]: Adjust it. Change-Id: Iecd9edbacca5805a54bcaf84bcec205367b96a05 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
* gnu: qcoro-qt: Build with -fPICDoğan Çeçen2024-09-061-1/+2
| | | | | | | | * gnu/packages/qt.scm (qcoro-qt5, qcoro-qt6)[arguments]: Adjust configure-flags to add -fPIC to CMAKE_CXX_FLAGS. Change-Id: I5ed2ee18cec120b282863ce6a5f6b6b149059515 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
* gnu: kwin: Disable failing test on aarch64.Roman Scherer2024-09-061-0/+6
| | | | | | | | * gnu/packages/kde-plasma.scm (kwin)[arguments]: Disable failing test on aarch64. Change-Id: Iecd9edbacca5805a54bcaf84bcec205367b96a05 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
* gnu: nano: Update to 8.2.Andy Tai2024-09-061-2/+2
| | | | | | | * gnu/packages/text-editors.scm (nano): Update to 8.2. Change-Id: I72d3ead40cc5cabf52931567195d6bafd3e86d6e Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
* gnu: flatpak: Update to 1.14.10 [security fixes].Zheng Junjie2024-09-062-7/+5
| | | | | | | | | | Fixes CVE-2024-42472. Fixes <https://issues.guix.gnu.org/73059>. * gnu/packages/package-management.scm (flatpak): Update to 1.14.10. * gnu/packages/patches/flatpak-unset-gdk-pixbuf-for-sandbox.patch: Adjust it. Change-Id: Ia0bd866ee46e8b0cd24d37d14df61cdc22692d4e
* gnu: bubblewrap: Update to 0.10.0.Zheng Junjie2024-09-061-46/+45
| | | | | | | | | | * gnu/packages/virtualization.scm (bubblewrap): Update to 0.10.0. [source]: Switch to git-fetch. [build-system]: Switch to meson-build-system. [native-inputs]: Add pkg-config. [arguments]: Use G-expressions, Remove trailing #t. Change-Id: Id1b459832a6a0b2d7636855774a1ffaadb1aacba
* gnu: xournalpp: Show icons.Nicolas Goaziou2024-09-061-2/+9
| | | | | | | | | | Fixes: <https://issues.guix.gnu.org/51968> * gnu/packages/pdf.scm (xournalpp)[arguments]: Add phase to wrap GDK_PIXBUF_MODULE_FILE. [inputs]: Add ADWAITA-ICON-THEME. Change-Id: Ie0e20249462c66f974b2fe1e3156d5fc9cb01b62
* activation: Fix TOCTTOU in mkdir-p/perms.Maxime Devos2024-09-061-33/+57
| | | | | | | | | | | | | Fixes <https://issues.guix.gnu.org/47584>. I removed the 'Based upon mkdir-p from (guix build utils)' comment because it's quite a bit different now. * gnu/build/activation.scm (verify-not-symbolic): Delete. (mkdir-p/perms): Rewrite in terms of 'openat'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: Id2f5bcbb903283afd45f6109190210d02eb383c7
* gnu: python-pytorch-lightning: Update to commit 2064887.David Elsing2024-09-061-119/+130
| | | | | | | | * gnu/packages/machine-learning.scm (python-pytorch-lightning): Update to commit 2064887. [source]: Update URL. [arguments]<#:tests-flags>: Skip additional failing tests. <#:phases>: Adjust 'patch-version-detection' phase.
* gnu: python-torchmetrics: Update to 1.4.1.David Elsing2024-09-061-6/+14
| | | | | | | | * gnu/packages/machine-learning.scm (python-torchmetrics): Update to 1.4.1. [source]: Switch to GitHub repository. [arguments]: New field. [propagated-inputs]: Add python-lightning-utilities. [home-page]: Update URL.
* gnu: python-lightning-utilities: Update to 0.11.6.David Elsing2024-09-061-4/+4
| | | | | | | * gnu/packages/machine-learning.scm (python-lightning-utilities): Update to 0.11.6. [source] Adjust URI. [build-system]: Move to pyproject-build-system.
* gnu: python-torchvision: Update to 0.19.0.David Elsing2024-09-061-5/+16
| | | | | | * gnu/packages/machine-learning.scm (python-torchvision): Update to 0.19.0. [arguments]: Add 'setenv' phase for finding libjpeg-turbo. [inputs]: Add ffmpeg.
* gnu: python-pytorch: Update to 2.4.0.David Elsing2024-09-065-134/+119
| | | | | | | | | | | | | | | | | | | | | | This also updates the qnnpack-pytorch package. * gnu/packages/machine-learning.scm (%python-pytorch-version): Set to 2.4.0. (%python-pytorch-src): Adjust hash accordingly. [source]: Remove obsolete file deletions in snippet. (python-pytorch)[arguments]<#:phases>: Disable telemetry and set Python install directory. Remove obsolete USE_FFMPEG, USE_OPENCV and USE_PYTORCH_QNNPACK environment variables. [native-inputs]: Remove python-typing-extensions. [inputs]: Add brotli, cpp-httplib and zlib. Remove qnnpack. Use oneapi-dnnl, qnnpack-pytorch and xnnpack for all systems. [propagated-inputs]: Add onnx and python-typing-extensions. Use cpuinfo for all systems. [supported-systems]: New field. (python-pytorch-for-r-torch)[inputs]: Add qnnpack. * gnu/packages/patches/python-pytorch-fix-codegen.patch: Adjust patch. * gnu/packages/patches/python-pytorch-runpath.patch: Adjust patch. * gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust patch. * gnu/packages/patches/python-pytorch-without-kineto.patch: Adjust patch.
* gnu: cpp-httplib: Update to 0.16.0.David Elsing2024-09-061-2/+2
| | | | * gnu/packages/cpp.scm (cpp-httplib): Update to 0.16.0.
* gnu: gloo: Update to commit 81925d1.David Elsing2024-09-061-3/+5
| | | | | | * gnu/packages/machine-learning.scm (gloo): Update to commit 81925d1. [arguments]: Add -DCMAKE_CXX_STANDARD=17 to #:configure-flags. [supported-systems]: New field.
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