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* gnu: unrtf: Fix download location.•••* gnu/packages/unrtf.scm (unrtf): Fix download location. Andreas Enge2015-07-031-2/+3
* gnu: r: Replace "atlas" with "openblas".•••* gnu/packages/statistics.scm (r)[inputs]: Replace "atlas" with "openblas". Ricardo Wurmus2015-07-031-2/+2
* gnu: gnutls: Move man3 pages to "doc" output.•••* gnu/packages/gnutls.scm (gnutls)[arguments]: Add #:phases. Ludovic Courtès2015-07-031-2/+18
* gnu: qt-4: Remove reference from "out" to "doc".•••* gnu/packages/qt.scm (qt-4)[arguments]: Remove '-docdir' configure flag. Add 'move-doc' phase. Ludovic Courtès2015-07-031-2/+20
* gnu: qt-4: Use a more standard directory layout.•••* gnu/packages/qt.scm (qt-4)[arguments]: Pass -datadir, -importdir, -plugindir, and -translationdir. Ludovic Courtès2015-07-031-0/+8
* gnu: qt-4: Use 'modify-phases'.•••* gnu/packages/qt.scm (qt-4)[arguments]: Use 'modify-phases' instead of 'alist-replace'. Ludovic Courtès2015-07-031-3/+3
* gnu: cups-filter: Install backends and filters under lib/cups.•••This ensures that they are stripped during the 'strip' phase, thereby removing references to GCC and linux-libre-headers that would otherwise be found in debugging symbols. * gnu/packages/cups.scm (cups-filters)[source]: Change pkgbackenddir and pkgfilterdir to $(PREFIX)/lib/cups/{filter,backend}. (cups)[arguments]: Adjust accordingly. Ludovic Courtès2015-07-031-7/+11
* gnu: mysql: Remove unnecessary binaries.•••This saves ~42 MiB on x86_64. * gnu/packages/databases.scm (mysql)[arguments]: Add 'remove-extra-binaries' phase. Ludovic Courtès2015-07-031-0/+10
* gnu: mysql: Strip references and GCC and other build-time dependencies.•••* gnu/packages/databases.scm (mysql)[arguments]: Add 'strip-extra-references' phase. Ludovic Courtès2015-07-031-1/+13
* gnu: mutt: Don't retain reference to GCC.•••* gnu/packages/patches/mutt-store-references.patch: New file. * gnu/packages/mail.scm (mutt)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it. Ludovic Courtès2015-07-032-1/+19
* gnu: ghostscript: Add "doc" output.•••* gnu/packages/ghostscript.scm (ghostscript)[source](snippet): New field. [outputs]: New field. [arguments]: Add 'remove-doc-reference' phase. Ludovic Courtès2015-07-031-1/+16
* gnu: gnupg: Enable TLS support.•••* gnu/packages/gnupg.scm (gnupg)[native-inputs]: Add pkg-config. [inputs]: Add gnutls. (gnupg-2.0, gnupg-1)[native-inputs]: Override inherited value to be '(). Mark H Weaver2015-07-021-0/+6
* gnu: gnupg: Update to 2.1.6.•••* gnu/packages/gnupg.scm (gnupg): Update to 2.1.6. Mark H Weaver2015-07-021-2/+2
* gnu: Add WarpedLMM.•••* gnu/packages/bioinformatics.scm (python2-warpedlmm): New variable. Ricardo Wurmus2015-07-021-0/+47
* gnu: r: Set default pager.•••* gnu/packages/statistics.scm (r)[arguments]: Add phase "set-default-pager" to avoid "false" as a default pager. Ricardo Wurmus2015-07-021-5/+10
* environment: Define 'GUIX_ENVIRONMENT'.•••* guix/scripts/environment.scm (create-environment): Define 'GUIX_ENVIRONMENT'. * doc/guix.texi (Invoking guix environment): Document it. * gnu/system/shadow.scm (default-skeletons): Adjust 'PS1' depending on whether 'GUIX_ENVIRONMENT' is defined. Ludovic Courtès2015-07-011-1/+7
* gnu: powertabeditor: Replace "gcc" with "libiberty".•••* gnu/packages/music.scm (powertabeditor)[inputs]: Replace "gcc" with "libiberty". Ricardo Wurmus2015-07-011-2/+2
* gnu: Add Hydrogen.•••* gnu/packages/music.scm (hydrogen): New variable. Ricardo Wurmus2015-07-011-0/+70
* gnu: linux-libre: Update to 4.1.1.•••* gnu/packages/linux.scm (linux-libre): Update to 4.1.1. Mark H Weaver2015-07-011-2/+2
* gnu: git: Add inputs for send-email.•••* gnu/packages/version-control.scm (package-transitive-propagated-labels*) (package-propagated-input-refs): New procedures. (git)[inputs]: Add perl-authen-sasl, perl-net-smtp-ssl, and perl-io-socket-ssl. [outputs]: Add send-email output. [arguments]: Add #:modules argument with srfi-1. In 'split phase, wrap git-send-email. Eric Bavier2015-06-301-3/+46
* gnu: Add perl-authen-sasl.•••* gnu/packages/web.scm (perl-authen-sasl): New variable. Eric Bavier2015-06-301-0/+21
* gnu: Add perl-gssapi.•••* gnu/packages/web.scm (perl-gssapi): New variable. Eric Bavier2015-06-301-0/+24
* gnu: Add perl-net-smtp-ssl.•••* gnu/packages/web.scm (perl-net-smtp-ssl): New variable. Eric Bavier2015-06-301-0/+20
* gnu: curl: Disable test that fails on Hydra.•••* gnu/packages/curl.scm (arguments): Disable test 1510. Mark H Weaver2015-06-301-0/+19
* gnu: curl: Update to 7.43.0.•••* gnu/packages/curl.scm (curl): Update to 7.43.0. Mark H Weaver2015-06-301-2/+2
* gnu: Add deal.II.•••* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables. * gnu/packages/patches/dealii-p4est-interface.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier2015-06-292-1/+145
* gnu: Add SLEPc.•••* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi) (slepc-complex-openmpi): New variables. Eric Bavier2015-06-291-0/+100
* gnu: Add arpack-ng-openmpi.•••* gnu/packages/maths.scm (arpack-ng-openmpi): New variable. Eric Bavier2015-06-291-0/+9
* gnu: petsc: Upgrade to 3.6.0.•••* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0. * gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch. * gnu-system.am (dist_patch_DATA): Remove it. Eric Bavier2015-06-292-31/+10
* gnu: Add MUMPS.•••* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi) (mumps-metis-openmpi): New variables. * gnu/packages/patches/mumps-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier2015-06-292-0/+182
* gnu: Add METIS.•••* gnu/packages/maths.scm (metis): New variable. Eric Bavier2015-06-291-0/+30
* gnu: Add p4est.•••* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables. Eric Bavier2015-06-291-0/+46
* gnu: Add ScaLAPACK.•••* gnu/packages/maths.scm (scalapack): New variable. Eric Bavier2015-06-291-0/+29
* gnu: scotch, pt-scotch: Build esmumps libraries.•••* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps phase. Install esmumps libraries and headers in 'install phase. (pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add make parallelism. Eric Bavier2015-06-291-3/+20
* gnu: scotch, pt-scotch: Use modify-phases.•••* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases. Eric Bavier2015-06-291-39/+31
* gnu: Update scotch to 6.0.4.•••* gnu/packages/maths.scm (scotch): Update to 6.0.4. [arguments]: Add -fPIC to CFLAGS. * gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a new set of test fixes. * gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier2015-06-293-132/+28
* gnu: openmpi: Upgrade to 1.8.5.•••* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5. [native-inputs]: Add perl. [arguments]: Add configure flags for thread support. Eric Bavier2015-06-291-8/+11
* gnu: hwloc: Move numactl to inputs.•••* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here... [inputs]: ...to here. [arguments]: New 'refine-libnuma' phase. Eric Bavier2015-06-291-3/+13
* gnu: hwloc: Upgrade to 1.10.1.•••* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch. * gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1. [source]: Use patch. [propagated-inputs]: Remove libpci. [inputs]: Add libpciaccess. * gnu-system.am (dist_patch_DATA): Add patch. Eric Bavier2015-06-292-13/+23
* gnu: python-mccabe: Fix license field.•••* gnu/packages/python.scm (python-mccabe)[license]: 'expat' -> 'license:expat'. Eric Bavier2015-06-291-1/+1
* gnu: Add python-flake8.•••* gnu/packages/python.scm (python-flake8, python2-flake8): New variables. Cyril Roelandt2015-06-301-0/+70
* gnu: Add python-mccabe.•••* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables. Cyril Roelandt2015-06-301-0/+27
* gnu: Add python-pyflakes.•••* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables. Cyril Roelandt2015-06-301-0/+24
* gnu: Add python-pep8.•••* gnu/packages/python.scm (python-pep8, python2-pep8): New variables. Cyril Roelandt2015-06-301-0/+27
* gnu: withershins: Use new "libiberty" package.•••* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty". [arguments]: Simplify "find-libiberty" phase. Ricardo Wurmus2015-06-291-14/+6
* gnu: Add libiberty.•••* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables. Ricardo Wurmus2015-06-291-0/+35
* gnu: r: Update to 3.2.1.•••* gnu/packages/statistics.scm (r): Update to 3.2.1. * gnu/packages/patches/r-fix-15899.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. Ricardo Wurmus2015-06-292-20/+2
* gnu: Add Blast+.•••* gnu/packages/bioinformatics.scm (blast+): New variable. Ricardo Wurmus2015-06-291-0/+148
* gnu: global: Update to 6.5.•••* gnu/packages/code.scm (global): Update to 6.5. Ludovic Courtès2015-06-291-2/+2
* gnu: help2man: Update to 1.47.1.•••* gnu/packages/man.scm (help2man): Update to 1.47.1. Ludovic Courtès2015-06-291-2/+2
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