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* gnu: cl-stmx: Update to 2.0.5-3.95f7dea.•••* gnu/packages/lisp-xyz.scm (sbcl-stmx): Update to 2.0.5-3.95f7dea. [arguments]: Remove 'fix-build' phase. Change-Id: I72e3f323f38ced32ea03ab2661d5802e93e13572 Guillaume Le Vaillant2024-05-251-15/+4
* gnu: cl-collectors: Update to 1.0-2.4c5e70c.•••* gnu/packages/lisp-xyz.scm (sbcl-collectors): Update to 1.0-2.4c5e70c. Change-Id: I95c9beb1aa5e59b658ee091ab14d803e6eded3fe Guillaume Le Vaillant2024-05-251-3/+3
* gnu: cl-cf: Update to 1.0-2.fbc025b.•••* gnu/packages/lisp-xyz.scm (sbcl-cf): Update to 1.0-2.fbc025b. Change-Id: Ide38475fb171f71c5dc35bb12d66a81b0f08cf64 Guillaume Le Vaillant2024-05-251-3/+3
* gnu: gssdp-1.4: Fix building.•••This is a follow-up to 9901416233867233192b63fde7f616751127b189. * gnu/packages/gnome.scm (gssdp-1.4)[arguments]: Override inherited arguments to set the configure-flags specifically. Change-Id: Ifbdaf278a402a26b344b6dcd7a5e3d4e22148561 Efraim Flashner2024-05-241-0/+3
* gnu: ctl: Update to 1.5.3.•••* gnu/packages/graphics.scm (ctl): Update to 1.5.3. [source]: Download using git-fetch. [arguments]: Don't skip the tests. [inputs]: Add libtiff. Change-Id: Iae08b6a2a7c0418bde10b31c3356425750703a9f Efraim Flashner2024-05-231-7/+9
* gnu: roxterm: Fix lint errors.•••* gnu/packages/terminals.scm (roxterm)[source]: Add the file-name field. Follow source url redirect. [home-page]: Follow redirect. Change-Id: Id68c87679a95656212c0c0edb916066e90a037d7 Efraim Flashner2024-05-231-2/+3
* gnu: shared-mime-info: Fix cross-compiling.•••* gnu/packages/freedesktop.scm (shared-mime-info)[native-inputs]: When cross-compiling add libxml2 and this-package. Change-Id: I254a685a492b9080342b134ff23d9ccab0ecec3d Efraim Flashner2024-05-231-3/+7
* gnu: libbraille: Fix build on some architectures.•••* gnu/packages/accessibility.scm (libbraille)[arguments]: When building with config as a native-input replace the config.guess and config.sub files. [native-inputs]: When building for aarch64-linux, powerpc64le-linux or riscv64-linux add config. Change-Id: I7e7953a2b91868fa3f2698d3cb82da134564c06b Efraim Flashner2024-05-231-4/+25
* gnu: gtk-vnc: Build with gjs on more architectures.•••* gnu/packages/gnome.scm (gtk-vnc)[native-inputs] Use gjs as an input on architectures where it is supported. Change-Id: I723f53be8e225732572ede81a03d712a946be528 Efraim Flashner2024-05-231-5/+4
* gnu: glade3: Build with gjs on more architectures.•••* gnu/packages/gnome.scm (glade3)[inputs]: Use gjs as an input on architectures where it is supported. Change-Id: I6d6596045b7a3f0dc22207350b353fcd82961958 Efraim Flashner2024-05-231-3/+2
* gnu: gtk-vnc: Build without node.•••* gnu/packages/gnome.scm (gtk-vnc)[native-inputs]: Remove node. Change-Id: I35b4be1fa203cf75da3d88f078ac0fc613a60489 Efraim Flashner2024-05-231-2/+0
* gnu: brltty: Build with java only on some architectures.•••* gnu/packages/accessibility.scm (brltty)[native-inputs]: Only build with icedtea on x86_64-linux, i686-linux and aarch64-linux. Change-Id: I95e2cfa17c1f484677ad8f26e3a865eba83362dd Efraim Flashner2024-05-231-11/+16
* gnu: gnome-text-editor: Build with cmake-minimal.•••* gnu/packages/gnome.scm (gnome-text-editor)[native-inputs]: Replace cmake with cmake-minimal. Change-Id: I3e23fb390896ab9f1fb3be36789fbe84df04ae36 Efraim Flashner2024-05-231-1/+1
* gnu: gnome-meta-core-utilities: Add eog unconditionally.•••eog was removed because it required librsvg built with rust, but gnome-shell also requires the same librsvg already, so there was no reason to limit the architectures eog was installed on. * gnu/packages/gnome.scm (gnome-meta-core-utilities)[propagated-inputs]: Add eog unconditionally. Change-Id: I333d1a712b1d04409f3deccc90aa5adb2a4fac1b Efraim Flashner2024-05-231-7/+2
* gnu: gssdp: Enable building on more architectures.•••* gnu/packages/gnome.scm (gssdp)[arguments]: Adjust configure-flags to only build the manpages when pandoc is an input. [native-inputs]: Only add pandoc when on architectures where it is supported. Change-Id: I6e69833295fc19b311cdaf977b3b5cc7abc01589 Efraim Flashner2024-05-231-8/+16
* gnu: Add specification-ipld.•••* gnu/packages/specifications.scm (specification-ipld): New variable. Change-Id: Ib36d0cdb4a6d20da789ba20830945c8a7d223b69 Sharlatan Hellseher2024-05-231-0/+31
* gnu: kubo: Remove propagated package.•••* gnu/packages/ipfs.scm (kubo) [inputs]: Remove go-golang-org-x-text. Add annotation for indirect inputs where they are needed for. Change-Id: I90eb26ab5d386a70f3581030ef4b3f9b35e05e88 Sharlatan Hellseher2024-05-231-20/+22
* gnu: abseil-cpp: Fix linking on riscv64-linux.•••* gnu/packages/cpp.scm (abseil-cpp)[arguments]: When building for riscv64-linux adjust the configure-flags to link with latomic. Change-Id: I12099d1a99b54f20f7ddbba2fbd495379a05476b Efraim Flashner2024-05-231-0/+5
* gnu: wireshark: Update to 4.2.5 [security fixes].•••Fixes CVE-2024-4853, CVE-2024-4854, CVE-2024-4855. * gnu/packages/networking.scm (wireshark): Update to 4.2.5. Change-Id: I1f60714bbea05a44d78f420404af5044d344fd12 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Timotej Lazar2024-05-231-2/+2
* gnu: dcmtk: Update to 3.6.8. [security-fixes]•••This fixes CVE-2022-43272. * gnu/packages/image-processing.scm (dcmtk): Update to 3.6.8. Change-Id: I4e0203219280a2571267f566cdfc8c2a9ea3fd18 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Nicolas Graves via Guix-patches via2024-05-231-2/+2
* gnu: podman: Update to 5.0.3 [security fixes].•••This fixes CVE-2024-3727. * gnu/packages/containers.scm (podman): Update to 5.0.3. Change-Id: Iefe98746c993830ef12c49733b8407b10305d065 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Tomas Volf2024-05-231-2/+2
* gnu: buildah: Update to 1.35.4 [security fixes].•••This fixes CVE-2024-3727 and CVE-2024-28180. * gnu/packages/containers.scm (buildah): Update to 1.35.4. Change-Id: I5ee2b4591b39ee85d7236aedda7a2508df8e0e48 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Tomas Volf2024-05-231-2/+2
* gnu: skopeo: Update to 1.15.1 [security fixes].•••This fixes CVE-2024-3727. * gnu/packages/virtualization.scm (skopeo): Update to 1.15.1. Change-Id: Icebb6f50e7317bce9ff106d71ad30dcfa6665666 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Tomas Volf2024-05-231-2/+2
* gnu: bvi: Update to 1.4.2.•••* gnu/packages/hexedit.scm (bvi): Update to 1.4.2. Change-Id: I9ac29adb8707f6daf61f397778a1f94b94f808ae Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Artyom V. Poptsov2024-05-231-2/+3
* gnu: passt: Update to 2024_05_10.7288448.•••* gnu/packages/containers.scm (passt): Update to 2024_05_10.7288448. Change-Id: Ic7b1e3423ad18c0ce0f06ce111f3dfdab04e860f Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Tomas Volf2024-05-231-2/+2
* gnu: Add pkcs11-helper.•••* gnu/packages/security-token.scm (pkcs11-helper): New variable. Change-Id: Ib17e0cf209a6fe797d0c797829ba91091b719028 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Andy Tai2024-05-231-0/+25
* gnu: kubo: Unbundle go-github-com-quic-go-quic-go.•••* gnu/packages/ipfs.scm (kubo): Unbundle go-github-com-quic-go-quic-go. [inputs]: Remove go-github-com-francoispqt-gojay and go-github-com-gogo-protobuf; add go-github-com-quic-go-quic-go. Change-Id: I4838bfed195b5e094f68ef73333ce9c7c7c7566e Sharlatan Hellseher2024-05-231-4/+4
* gnu: Remove go-github-com-lucas-clemente-quic-go.•••* gnu/packages/golang-web.scm (go-github-com-lucas-clemente-quic-go): Delete variable. Change-Id: Iac5dfdf15badb1de74323040267f814cdf7cd0f9 Sharlatan Hellseher2024-05-231-3/+0
* gnu: go-github-com-quic-go-quic-go: Enable tests.•••* gnu/packages/golang-web.scm (go-github-com-quic-go-quic-go): Enable tests. [arguments] <#:phases>: Add 'remove-failing-tests. Use custom 'check phase. [propagated-inputs]: Remove go-github-com-cheekybits-genny, go-github-com-golang-protobuf-proto, go-github-com-marten-seemann-chacha20, and go-github-com-quic-go-qtls-go1-20; add go-github-com-francoispqt-gojay. [native-inputs]: Add go-ginkgo, go-github-com-onsi-ginkgo-v2, go-go-uber-org-mock, and go-golang-org-x-time. Change-Id: I8bc03cbe1e9766188157e621f4d7f9e3a7f6adeb Sharlatan Hellseher2024-05-231-7/+29
* gnu: go-github-com-syndtr-goleveldb-leveldb: Move to golang-xyz.•••* gnu/packages/golang.scm (go-github-com-syndtr-goleveldb-leveldb): Move from here ... * gnu/packages/golang-xyz.scm: ... to here. Change-Id: Ib457abe33612b371c33985c6b3b0e9372221e37d Sharlatan Hellseher2024-05-232-30/+30
* gnu: go-github-com-syndtr-goleveldb-leveldb: Use go-1.21.•••* gnu/packages/golang.scm (go-github-com-syndtr-goleveldb-leveldb) [arguments] <#:go>: Swap to go-1.21. Change-Id: I6ecbfb8d2cbf29dc177536345fb1caa5001f35df Sharlatan Hellseher2024-05-231-5/+8
* gnu: Add go-ginkgo.•••* gnu/packages/golang-check.scm (go-ginkgo): New variable. Change-Id: I5c56c87a75c383ec159cee4e7eaa7808bfdcd1f7 Sharlatan Hellseher2024-05-221-0/+15
* gnu: go-github-com-onsi-gomega: Update to 1.33.1.•••* gnu/packages/golang-check.scm (go-github-com-onsi-gomega): Update to 1.33.1. [arguments] <#:go>: Swap to go-1.21. [propagated-inputs]: Remove go-gopkg-in-yaml-v2; add go-gopkg-in-yaml-v3. Change-Id: I910206fd44198550bdc7da1ebdaff3874d89f1ed Sharlatan Hellseher2024-05-221-7/+9
* gnu: go-github-com-onsi-ginkgo-v2: Update to 2.18.0.•••* gnu/packages/golang-check.scm (go-github-com-onsi-ginkgo-v2): Update to 2.18.0. [propagated-inputs]: Remove go-github-com-go-task-slim-sprig; add go-github-com-go-task-slim-sprig-v3 and go-github-com-google-pprof. Change-Id: I3af9d36e1428745557173135fcaa1e4623d4f57f Sharlatan Hellseher2024-05-221-4/+4
* gnu: Add go-github-com-go-task-slim-sprig-v3.•••* gnu/packages/golang-xyz.scm (go-github-com-go-task-slim-sprig-v3): New variable. Change-Id: I46ef3728993556dfc2d6c9349da6962d747e2664 Sharlatan Hellseher2024-05-221-0/+20
* gnu: go-github-com-go-task-slim-sprig: Enable tests.•••* gnu/packages/golang-xyz.scm (go-github-com-go-task-slim-sprig) [arguments] <#:tests>: Enable it. <#:phases>: Add 'remove-failing-tests phase. Change-Id: I32424925a96defd69e2871dee079db8bef2861b2 Sharlatan Hellseher2024-05-221-3/+9
* gnu: go-github-com-go-task-slim-sprig: Move to golang-xyz.•••* gnu/packages/golang.scm (go-github-com-go-task-slim-sprig): Move from here ... * gnu/packages/golang-xyz.scm: ... to here. Change-Id: I540e4211e7e4006d654c7da40bba35e2bd577c78 Sharlatan Hellseher2024-05-222-28/+29
* gnu: Add go-go-uber-org-mock.•••* gnu/packages/golang-check.scm (go-go-uber-org-mock): New variable. Change-Id: I9028edc15f1acd3301fde3a49eae8cc28568c6a5 Sharlatan Hellseher2024-05-221-0/+33
* gnu: Add python-augeas.•••* gnu/packages/python-xyz.scm (python-augeas): New variable. Change-Id: I46d409debfbc358f0ff27c505fba089ceab4e195 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Artyom V. Poptsov2024-05-221-0/+29
* gnu: augeas: Update to 1.14.1.•••* gnu/packages/augeas.scm (augeas): Update to 1.14.1. [source]: Use tarballs from GitHub. [inputs]: Change to "native-inputs". Add readline. Change-Id: I9ca46b8a50d11c75ff6d816f2f15e1f005877244 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Artyom V. Poptsov2024-05-221-8/+14
* gnu: Add r-tglkmeans.•••* gnu/packages/cran.scm (r-tglkmeans): New variable. Change-Id: I13aa0e8c4ab062993d84c99811971ebf6e9179bd Marco Baggio2024-05-221-0/+40
* gnu: Add r-slanter.•••* gnu/packages/cran.scm (r-slanter): New variable. Change-Id: I3b6c76431940f5e6be6a86344029552dded54e54 Marco Baggio2024-05-221-0/+22
* gnu: Add r-shinydashboardplus.•••* gnu/packages/cran.scm (r-shinydashboardplus): New variable. Change-Id: Ie50bd8a0234af0fb5ea63377aa005655acad01bd Ricardo Wurmus2024-05-221-0/+83
* gnu: Add r-waiter.•••* gnu/packages/cran.scm (r-waiter): New variable. Change-Id: I98b27630eba86ab700ac30a361baf14a5d58dae8 Ricardo Wurmus2024-05-221-0/+169
* gnu: Add esbuild-node.•••* gnu/packages/web.scm (esbuild-node): New variable. Change-Id: I5e1a353a13ef7b4018fcf4aef4832af25f3dabe2 Ricardo Wurmus2024-05-221-0/+59
* gnu: ensembl-vep: Update to 112.•••* gnu/packages/bioinformatics.scm (ensembl-vep): Update to 112. [propagated-inputs]: Add perl-list-moreutils. [native-inputs]: Add perl-test-deep and perl-test-warnings. Change-Id: I8c7de9f3dbc8c6fe4d1383f9dc215aeba018af0d Ricardo Wurmus2024-05-221-8/+11
* gnu: Add r-chameleon.•••* gnu/packages/cran.scm (r-chameleon): New variable. Change-Id: I9e0f3c27e434bb802c86ef9e2877f4d810397158 Signed-off-by: Ricardo Wurmus <rekado@elephly.net> guix@mawumag.com2024-05-221-0/+21
* gnu: python-pandera: Update to 0.18.0, fix build.•••* gnu/packages/python-science.scm (python-pandera): Update to 0.18.0. [arguments] <#:test-flags>: Disable one more failing test. Change-Id: I4d3f59dae8d90ea0afbe9cc932fc6163def282c9 Sharlatan Hellseher2024-05-221-3/+4
* gnu: python-pymysql: Propagate python-cryptography.•••* gnu/packages/databases.scm (python-pymysql) [inputs]: Swap to [propagated-inputs]. [propagated-inputs]: Add python-pynacl (mycli, sqlcrush): Remove propagated python-cryptography. Change-Id: I40ee51087cd14cb98bd2390095fa9f6f0d144b47 Sharlatan Hellseher2024-05-221-5/+3
* gnu: python-pymysql: Update to 1.1.1 [fixes CVE-2024-36039].•••* gnu/packages/databases.scm (python-pymysql): Update to 1.1.1. [source]: Refresh archive name as seen on <https://pypi.org/project/PyMySQL/#files>. [build-system]: Swap to pyproject-build-system. Change-Id: I20d06f6d1d252f501df001120ee44520e6e5d785 Sharlatan Hellseher2024-05-221-4/+4