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* gnu: powertabeditor: Replace "gcc" with "libiberty".•••* gnu/packages/music.scm (powertabeditor)[inputs]: Replace "gcc" with "libiberty". Ricardo Wurmus2015-07-011-2/+2
* gnu: Add Hydrogen.•••* gnu/packages/music.scm (hydrogen): New variable. Ricardo Wurmus2015-07-011-0/+70
* gnu: linux-libre: Update to 4.1.1.•••* gnu/packages/linux.scm (linux-libre): Update to 4.1.1. Mark H Weaver2015-07-011-2/+2
* gnu: git: Add inputs for send-email.•••* gnu/packages/version-control.scm (package-transitive-propagated-labels*) (package-propagated-input-refs): New procedures. (git)[inputs]: Add perl-authen-sasl, perl-net-smtp-ssl, and perl-io-socket-ssl. [outputs]: Add send-email output. [arguments]: Add #:modules argument with srfi-1. In 'split phase, wrap git-send-email. Eric Bavier2015-06-301-3/+46
* gnu: Add perl-authen-sasl.•••* gnu/packages/web.scm (perl-authen-sasl): New variable. Eric Bavier2015-06-301-0/+21
* gnu: Add perl-gssapi.•••* gnu/packages/web.scm (perl-gssapi): New variable. Eric Bavier2015-06-301-0/+24
* gnu: Add perl-net-smtp-ssl.•••* gnu/packages/web.scm (perl-net-smtp-ssl): New variable. Eric Bavier2015-06-301-0/+20
* gnu: curl: Disable test that fails on Hydra.•••* gnu/packages/curl.scm (arguments): Disable test 1510. Mark H Weaver2015-06-301-0/+19
* gnu: curl: Update to 7.43.0.•••* gnu/packages/curl.scm (curl): Update to 7.43.0. Mark H Weaver2015-06-301-2/+2
* gnu: Add deal.II.•••* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables. * gnu/packages/patches/dealii-p4est-interface.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier2015-06-292-1/+145
* gnu: Add SLEPc.•••* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi) (slepc-complex-openmpi): New variables. Eric Bavier2015-06-291-0/+100
* gnu: Add arpack-ng-openmpi.•••* gnu/packages/maths.scm (arpack-ng-openmpi): New variable. Eric Bavier2015-06-291-0/+9
* gnu: petsc: Upgrade to 3.6.0.•••* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0. * gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch. * gnu-system.am (dist_patch_DATA): Remove it. Eric Bavier2015-06-292-31/+10
* gnu: Add MUMPS.•••* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi) (mumps-metis-openmpi): New variables. * gnu/packages/patches/mumps-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier2015-06-292-0/+182
* gnu: Add METIS.•••* gnu/packages/maths.scm (metis): New variable. Eric Bavier2015-06-291-0/+30
* gnu: Add p4est.•••* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables. Eric Bavier2015-06-291-0/+46
* gnu: Add ScaLAPACK.•••* gnu/packages/maths.scm (scalapack): New variable. Eric Bavier2015-06-291-0/+29
* gnu: scotch, pt-scotch: Build esmumps libraries.•••* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps phase. Install esmumps libraries and headers in 'install phase. (pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add make parallelism. Eric Bavier2015-06-291-3/+20
* gnu: scotch, pt-scotch: Use modify-phases.•••* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases. Eric Bavier2015-06-291-39/+31
* gnu: Update scotch to 6.0.4.•••* gnu/packages/maths.scm (scotch): Update to 6.0.4. [arguments]: Add -fPIC to CFLAGS. * gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a new set of test fixes. * gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier2015-06-293-132/+28
* gnu: openmpi: Upgrade to 1.8.5.•••* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5. [native-inputs]: Add perl. [arguments]: Add configure flags for thread support. Eric Bavier2015-06-291-8/+11
* gnu: hwloc: Move numactl to inputs.•••* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here... [inputs]: ...to here. [arguments]: New 'refine-libnuma' phase. Eric Bavier2015-06-291-3/+13
* gnu: hwloc: Upgrade to 1.10.1.•••* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch. * gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1. [source]: Use patch. [propagated-inputs]: Remove libpci. [inputs]: Add libpciaccess. * gnu-system.am (dist_patch_DATA): Add patch. Eric Bavier2015-06-292-13/+23
* gnu: python-mccabe: Fix license field.•••* gnu/packages/python.scm (python-mccabe)[license]: 'expat' -> 'license:expat'. Eric Bavier2015-06-291-1/+1
* gnu: Add python-flake8.•••* gnu/packages/python.scm (python-flake8, python2-flake8): New variables. Cyril Roelandt2015-06-301-0/+70
* gnu: Add python-mccabe.•••* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables. Cyril Roelandt2015-06-301-0/+27
* gnu: Add python-pyflakes.•••* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables. Cyril Roelandt2015-06-301-0/+24
* gnu: Add python-pep8.•••* gnu/packages/python.scm (python-pep8, python2-pep8): New variables. Cyril Roelandt2015-06-301-0/+27
* gnu: withershins: Use new "libiberty" package.•••* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty". [arguments]: Simplify "find-libiberty" phase. Ricardo Wurmus2015-06-291-14/+6
* gnu: Add libiberty.•••* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables. Ricardo Wurmus2015-06-291-0/+35
* gnu: r: Update to 3.2.1.•••* gnu/packages/statistics.scm (r): Update to 3.2.1. * gnu/packages/patches/r-fix-15899.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. Ricardo Wurmus2015-06-292-20/+2
* gnu: Add Blast+.•••* gnu/packages/bioinformatics.scm (blast+): New variable. Ricardo Wurmus2015-06-291-0/+148
* gnu: global: Update to 6.5.•••* gnu/packages/code.scm (global): Update to 6.5. Ludovic Courtès2015-06-291-2/+2
* gnu: help2man: Update to 1.47.1.•••* gnu/packages/man.scm (help2man): Update to 1.47.1. Ludovic Courtès2015-06-291-2/+2
* gnu: parallel: Update to 20150622.•••* gnu/packages/parallel.scm (parallel): Update to 20150622. Ludovic Courtès2015-06-291-2/+2
* gnu: screen: Update to 4.3.1.•••* gnu/packages/screen.scm (screen): Update to 4.3.1. Ludovic Courtès2015-06-291-2/+2
* gnu: texinfo: Add version 6.0.•••* gnu/packages/texinfo.scm (texinfo-6): New variable. Ludovic Courtès2015-06-291-1/+13
* gnu: gcc-4.8: Update to 4.8.5.•••* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5. Ludovic Courtès2015-06-291-2/+2
* gnu: Add plink.•••* gnu/packages/bioinformatics.scm (plink): New variable. * gnu/packages/patches/plink-1.07-unclobber-i.patch: New file. Ricardo Wurmus2015-06-292-0/+122
* gnu: synergy: Upgrade to 1.7.3.•••* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3 [source]: Use github for source download. Add snippet to remove bundled source and binaries. [inputs]: Add openssl. [arguments]: Copy example configuration files to out during 'install phase. Eric Bavier2015-06-281-14/+36
* gnu: Add sfarkxtc.•••* gnu/packages/compression.scm (sfarkxtc): New variable. Ricardo Wurmus2015-06-281-0/+33
* gnu: Add sfarklib.•••* gnu/packages/compression.scm (sfarklib): New variable. Ricardo Wurmus2015-06-281-1/+37
* gnu: Add Guitarix.•••* gnu/packages/audio.scm (guitarix): New variable. Ricardo Wurmus2015-06-281-0/+61
* gnu: ardour: Update to 4.1.•••* gnu/packages/audio.scm (ardour): Update to 4.1. Ricardo Wurmus2015-06-281-4/+5
* gnu: Add libtar.•••* gnu/packages/compression.scm (libtar): New variable. Ricardo Wurmus2015-06-281-0/+21
* gnu: Add pv.••• * gnu/package/pv.scm (pv): New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Alex Kost <alezost@gmail.com> Claes Wallin2015-06-271-0/+46
* gnu: Refer to 'gcc' instead of 'gcc-4.9'.•••* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper, libstdc++, gcc-final): Refer to GCC instead of GCC-4.9. * gnu/packages/cross-base.scm (%xgcc): New variable. (cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9. * gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9. * gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc, %gcc-static, %gcc-stripped): Likewise. Ludovic Courtès2015-06-264-21/+26
* gnu: youtube-dl: Update to 2015.06.25.•••* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25. Ludovic Courtès2015-06-261-2/+2
* gnu: Add python2-fastlmm.•••* gnu/packages/python.scm (python2-fastlmm): New variable. Ricardo Wurmus2015-06-261-0/+36
* gnu: Add python2-pysnptools.•••* gnu/packages/python.scm (python2-pysnptools): New variable. Ricardo Wurmus2015-06-261-0/+33