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* gnu: libvirt: Update to 3.6.0.•••* gnu/packages/virtualization.scm (libvirt): Update to 3.6.0. Tobias Geerinckx-Rice2017-08-021-3/+3
* gnu: libvirt: Use HTTPS.•••* gnu/packages/virtualization.scm (libvirt)[source, home-page]: Use HTTPS. Tobias Geerinckx-Rice2017-08-021-2/+2
* gnu: Add r-rlang.•••* gnu/packages/statistics.scm (r-rlang): New variable. Roel Janssen2017-08-021-0/+18
* gnu: r-deseq2: Update to 1.16.1.•••* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.1. Roel Janssen2017-08-021-2/+2
* gnu: r-annotationforge: Update to 1.18.1.•••* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1. Roel Janssen2017-08-021-2/+2
* gnu: r-category: Update to 2.42.1.•••* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1. Roel Janssen2017-08-021-2/+2
* gnu: r-biocstyle: Update to 2.4.1.•••* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1. Roel Janssen2017-08-021-2/+2
* gnu: r-dnacopy: Update to 1.50.1.•••* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1. Roel Janssen2017-08-021-2/+2
* gnu: r-iranges: Update to 2.10.2.•••* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2. Roel Janssen2017-08-021-2/+2
* gnu: r-genomeinfodb: Update to 1.12.2.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2. Roel Janssen2017-08-021-2/+2
* gnu: r-variantannotation: Update to 1.22.3.•••* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3. Roel Janssen2017-08-021-2/+2
* gnu: r-limma: Update to 3.32.5.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5. Roel Janssen2017-08-021-2/+2
* gnu: r-biobase: Update to 2.36.2.•••* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2. Roel Janssen2017-08-021-2/+2
* gnu: r-annotationdbi: Update to 1.38.2.•••* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2. Roel Janssen2017-08-021-2/+2
* gnu: r-biomart: Update to 2.32.1.•••* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1. Roel Janssen2017-08-021-2/+2
* gnu: r-biocparallel: Update to 1.10.1.•••* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1. Roel Janssen2017-08-021-2/+2
* gnu: r-biostrings: Update to 2.44.2.•••* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2. Roel Janssen2017-08-021-2/+2
* gnu: r-delayedarray: Update to 0.2.7.•••* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7. Roel Janssen2017-08-021-2/+2
* gnu: r-summarizedexperiment: Update to 1.6.3.•••* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3. Roel Janssen2017-08-021-2/+2
* gnu: r-genomicalignments: Update to 1.12.1.•••* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1. Roel Janssen2017-08-021-2/+2
* gnu: r-rtracklayer: Update to 1.36.4.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4. Roel Janssen2017-08-021-2/+2
* gnu: r-genomicfeatures: Update to 1.28.4.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4. Roel Janssen2017-08-021-2/+2
* gnu: r-copywriter: Update to 2.8.1.•••* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1. Roel Janssen2017-08-021-2/+2
* gnu: r-sva: Update to 3.24.4.•••* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4. Roel Janssen2017-08-021-3/+6
* gnu: r-rsqlite: Update to 2.0.•••* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0. Roel Janssen2017-08-021-4/+7
* gnu: Add r-blob.•••* gnu/packages/statistics.scm (r-blob): New variable. Roel Janssen2017-08-021-0/+21
* gnu: Add r-pkgconfig.•••* gnu/packages/statistics.scm (r-pkgconfig): New variable. Roel Janssen2017-08-021-0/+18
* gnu: re2: Update to 2017-08-01.•••* gnu/packages/regex.scm (re2): Update to 2017-08-01. Marius Bakke2017-08-011-2/+2
* gnu: maim: Update to 5.4.66.•••* gnu/packages/xdisorg.scm (maim): Update to 5.4.66. Marius Bakke2017-08-011-2/+2
* gnu: slop: Update to 7.3.48.•••* gnu/packages/xdisorg.scm (slop): Update to 7.3.48. Marius Bakke2017-08-011-2/+2
* gnu: git: Update to 2.13.4.•••* gnu/packages/version-control.scm (git): Update to 2.13.4. Marius Bakke2017-08-011-3/+3
* gnu: r-foreign: Update hash after upstream tarball change.•••* gnu/packages/statistics.scm (r-foreign): Update hash. The only difference in the tarball is the metadata. The contents are identical. Roel Janssen2017-08-011-1/+1
* gnu: r-foreign: Remove duplicate recipe.•••* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe. Roel Janssen2017-08-011-20/+0
* gnu: rapidjson: Update to 1.1.0.•••* gnu/packages/web.scm (rapidjson): Update to 1.1.0. [source]: Remove snippet. Leo Famulari2017-08-011-8/+2
* gnu: Add pidentd.•••* gnu/packages/networking.scm (pidentd): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> ng02017-08-011-1/+27
* gnu: hyperrogue: Update to 10.0e.•••* gnu/packages/games.scm (hyperrogue): Update to 10.0e. [arguments]: Adjust accordingly. Kei Kebreau2017-08-011-4/+4
* gnu: metabat: Limit to x86_64 and i686 only.•••* gnu/packages/bioinformatics.scm (metabat)[supported-systems]: New field. Efraim Flashner2017-08-011-0/+2
* gnu: Add emacs-yasnippet-snippets.•••* gnu/packages/emacs.scm (emacs-yasnippet-snippets): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer2017-08-011-0/+45
* gnu: emacs-yasnippet: Upgrade to 0.12.0.•••* gnu/packages/emacs.scm (emacs-yasnippet): Upgrade to 0.12.0. [source]: Remove an uninstalled directory from yas-snippet-dirs. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer2017-08-011-2/+13
* gnu: guile-ssh: Update to 0.11.2.•••* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2. [source]: Remove 'patches', 'modules', and 'snippet'. * gnu/packages/patches/guile-ssh-channel-finalization.patch, gnu/packages/patches/guile-ssh-double-free.patch, gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them. Ludovic Courtès2017-08-014-95/+2
* gnu: artanis: Unbundled guile-json and version according to documentation.•••* gnu/packages/guile.scm (artanis): Unbundled guile-json and version according to documentation. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Adonay Felipe Nogueira2017-08-011-52/+78
* gnu: python-pbr-minimal: Update to 3.0.1•••* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1 [source]: Update hash and remove patch. * gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Muriithi Frederick Muriuki2017-08-012-31/+2
* gnu: libgit2: Enable SHA-1 collision detection.•••* gnu/packages/version-control.scm (libgit2)[arguments]: Enable '-DUSE_SHA1DC' in #:configure-flags. Leo Famulari2017-08-011-1/+2
* gnu: ruby-bio-commandeer: Update to 0.2.0.•••* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.2.0. Ben Woodcroft2017-08-011-2/+2
* gnu: libmicrohttpd: Update to 0.9.55.•••* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.55. [arguments]: Add 'add-missing-LDFLAGS' phase. Ludovic Courtès2017-07-311-4/+14
* gnu: xf86-video-intel: Update snapshot.•••* gnu/packages/xorg.scm (xf86-video-intel): Update to 2100efa. Introduce 'revision' variable. Ludovic Courtès2017-07-311-3/+5
* gnu: guile-bytestructures: Install .go files to lib/guile/X.Y.•••* gnu/packages/guile.scm (guile-bytestructures)[arguments]: Install .go files to OBJECT-DIR, defined as OUT/lib/guile/X.Y/site-ccache. Ludovic Courtès2017-07-311-1/+3
* gnu: tor: Remove '--enable-expensive-hardening' option.•••* gnu/packages/tor.scm (tor)[arguments]: Remove '--enable-expensive-hardening' option. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng02017-07-311-3/+2
* gnu: erlang: Update to 20.0.•••* gnu/packages/erlang.scm (erlang): Update to 20.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Peter Mikkelsen2017-07-311-5/+4
* gnu: network-manager: Add dependency on Newt.•••Suggested by Mark H Weaver. * gnu/packages/gnome.scm (network-manager)[inputs]: Add NEWT. Ludovic Courtès2017-07-311-0/+2
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