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* gnu: hwloc: Move numactl to inputs.•••* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here... [inputs]: ...to here. [arguments]: New 'refine-libnuma' phase. Eric Bavier2015-06-291-3/+13
* gnu: hwloc: Upgrade to 1.10.1.•••* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch. * gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1. [source]: Use patch. [propagated-inputs]: Remove libpci. [inputs]: Add libpciaccess. * gnu-system.am (dist_patch_DATA): Add patch. Eric Bavier2015-06-292-13/+23
* gnu: python-mccabe: Fix license field.•••* gnu/packages/python.scm (python-mccabe)[license]: 'expat' -> 'license:expat'. Eric Bavier2015-06-291-1/+1
* gnu: Add python-flake8.•••* gnu/packages/python.scm (python-flake8, python2-flake8): New variables. Cyril Roelandt2015-06-301-0/+70
* gnu: Add python-mccabe.•••* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables. Cyril Roelandt2015-06-301-0/+27
* gnu: Add python-pyflakes.•••* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables. Cyril Roelandt2015-06-301-0/+24
* gnu: Add python-pep8.•••* gnu/packages/python.scm (python-pep8, python2-pep8): New variables. Cyril Roelandt2015-06-301-0/+27
* gnu: withershins: Use new "libiberty" package.•••* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty". [arguments]: Simplify "find-libiberty" phase. Ricardo Wurmus2015-06-291-14/+6
* gnu: Add libiberty.•••* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables. Ricardo Wurmus2015-06-291-0/+35
* gnu: r: Update to 3.2.1.•••* gnu/packages/statistics.scm (r): Update to 3.2.1. * gnu/packages/patches/r-fix-15899.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. Ricardo Wurmus2015-06-292-20/+2
* gnu: Add Blast+.•••* gnu/packages/bioinformatics.scm (blast+): New variable. Ricardo Wurmus2015-06-291-0/+148
* gnu: global: Update to 6.5.•••* gnu/packages/code.scm (global): Update to 6.5. Ludovic Courtès2015-06-291-2/+2
* gnu: help2man: Update to 1.47.1.•••* gnu/packages/man.scm (help2man): Update to 1.47.1. Ludovic Courtès2015-06-291-2/+2
* gnu: parallel: Update to 20150622.•••* gnu/packages/parallel.scm (parallel): Update to 20150622. Ludovic Courtès2015-06-291-2/+2
* gnu: screen: Update to 4.3.1.•••* gnu/packages/screen.scm (screen): Update to 4.3.1. Ludovic Courtès2015-06-291-2/+2
* gnu: texinfo: Add version 6.0.•••* gnu/packages/texinfo.scm (texinfo-6): New variable. Ludovic Courtès2015-06-291-1/+13
* gnu: gcc-4.8: Update to 4.8.5.•••* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5. Ludovic Courtès2015-06-291-2/+2
* gnu: Add plink.•••* gnu/packages/bioinformatics.scm (plink): New variable. * gnu/packages/patches/plink-1.07-unclobber-i.patch: New file. Ricardo Wurmus2015-06-292-0/+122
* gnu: synergy: Upgrade to 1.7.3.•••* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3 [source]: Use github for source download. Add snippet to remove bundled source and binaries. [inputs]: Add openssl. [arguments]: Copy example configuration files to out during 'install phase. Eric Bavier2015-06-281-14/+36
* gnu: Add sfarkxtc.•••* gnu/packages/compression.scm (sfarkxtc): New variable. Ricardo Wurmus2015-06-281-0/+33
* gnu: Add sfarklib.•••* gnu/packages/compression.scm (sfarklib): New variable. Ricardo Wurmus2015-06-281-1/+37
* gnu: Add Guitarix.•••* gnu/packages/audio.scm (guitarix): New variable. Ricardo Wurmus2015-06-281-0/+61
* gnu: ardour: Update to 4.1.•••* gnu/packages/audio.scm (ardour): Update to 4.1. Ricardo Wurmus2015-06-281-4/+5
* gnu: Add libtar.•••* gnu/packages/compression.scm (libtar): New variable. Ricardo Wurmus2015-06-281-0/+21
* gnu: Add pv.••• * gnu/package/pv.scm (pv): New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Alex Kost <alezost@gmail.com> Claes Wallin2015-06-271-0/+46
* gnu: Refer to 'gcc' instead of 'gcc-4.9'.•••* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper, libstdc++, gcc-final): Refer to GCC instead of GCC-4.9. * gnu/packages/cross-base.scm (%xgcc): New variable. (cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9. * gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9. * gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc, %gcc-static, %gcc-stripped): Likewise. Ludovic Courtès2015-06-264-21/+26
* gnu: youtube-dl: Update to 2015.06.25.•••* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25. Ludovic Courtès2015-06-261-2/+2
* gnu: Add python2-fastlmm.•••* gnu/packages/python.scm (python2-fastlmm): New variable. Ricardo Wurmus2015-06-261-0/+36
* gnu: Add python2-pysnptools.•••* gnu/packages/python.scm (python2-pysnptools): New variable. Ricardo Wurmus2015-06-261-0/+33
* gnu: nettle: Disable ifunc method of library initialization.•••* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method' phase. Mark H Weaver2015-06-251-5/+18
* gnu: Replace versioned gfortran inputs with just "gfortran".•••* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with "gfortran". * gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise. * gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu) (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise. (octave)[native-inputs]: Likewise. (gmsh)[propagated-inputs]: Likewise. * gnu/packages/mpi.scm (openmpi)[inputs]: Likewise. * gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise. * gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with "gfortran". Ricardo Wurmus2015-06-256-16/+16
* gnu: Add default GCC and default gfortran.•••* gnu/packages/gcc.scm (gcc): New variable. * gnu/packages/gcc.scm (gfortran): New variable. Ricardo Wurmus2015-06-251-0/+5
* gnu: gstreamer: Add search path specification for 'GST_PLUGIN_SYSTEM_PATH'.•••This reverts commit e53fc0c8a, which add it wrongly to gst-plugins-base. * gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field. (gst-plugins-base)[native-search-paths]: Remove. 宋文武2015-06-251-4/+4
* gnu: pius: Depend on GnuPG 2.0 rather than 2.1.•••* gnu/packages/gnupg.scm (pius)[inputs]: Change GNUPG to GNUPG-2.0. Ludovic Courtès2015-06-241-2/+2
* gnu: julia: Use modify-phases syntax and add return values.•••* gnu/packages/julia.scm (julia)[arguments]: Use modify-phases syntax for build phases and add missing return values. Ricardo Wurmus2015-06-241-41/+45
* gnu: r: Use gfortran-4.9.•••* gnu/packages/statistics.scm (r)[inputs]: Replace gfortran-4.8 with gfortran-4.9. Ricardo Wurmus2015-06-241-1/+1
* gnu: Add gfortran 4.9.•••* gnu/packages/gcc.scm (gfortran-4.9): New variable. Ricardo Wurmus2015-06-241-0/+3
* gnu: Add hmmer.•••* gnu/packages/bioinformatics.scm (hmmer): New variable. Ben Woodcroft2015-06-241-0/+29
* gnu: screen: Install the Info manual.•••* gnu/packages/screen.scm (screen)[native-inputs]: New field. 宋文武2015-06-241-1/+4
* gnu: Add setBfree.•••* gnu/packages/audio.scm (setbfree): New variable. Ricardo Wurmus2015-06-231-0/+46
* gnu: ftgl: Propagate "freetype".•••* gnu/packages/gl.scm (ftgl)[inputs,propagated-inputs]: Move "freetype" from "inputs" to "propagated-inputs". Ricardo Wurmus2015-06-231-2/+3
* gnu: faust: Remove prebuilt library in snippet.•••* gnu/packages/audio.scm (faust)[arguments]: Remove the phase 'remove-prebuilt-library... * gnu/packages/audio.scm (faust)[origin]: ...and move it here as a snippet. Ricardo Wurmus2015-06-231-6/+5
* gnu: star: Update to 2.4.2a.•••* gnu/packages/bioinformatics.scm (star): Update to 2.4.2a. Ricardo Wurmus2015-06-231-2/+2
* gnu: miso: Install executables.•••* gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use "setuptools" so that executables are built. * gnu/packages/bioinformatics.scm (miso)[native-inputs]: Add "python2-mock" and "python2-pytz". Ricardo Wurmus2015-06-231-2/+7
* gnu: Add idr.•••* gnu/packages/bioinformatics.scm (idr): New variable. Ricardo Wurmus2015-06-231-0/+50
* gnu: linux-libre: Update to 4.1.•••* gnu/packages/linux.scm (linux-libre): Update to 4.1. [inputs]: Remove gcc-4.9, since it is now the default compiler. * gnu/packages/linux-libre-i686.conf, gnu/packages/linux-libre-x86_64.conf: Update to 4.1 configs from <https://jxself.org/git/?p=kernel-configs.git>. Mark H Weaver2015-06-233-178/+298
* gnu: Add gnome-klotski.•••* gnu/packages/gnome.scm (gnome-klotski): New variable. 宋文武2015-06-231-0/+30
* gnu: Add gom.•••* gnu/packages/gnome.scm (gom): New variable. Mark H Weaver2015-06-231-0/+32
* gnu: Add clutter-gst.•••* gnu/packages/gnome.scm (clutter-gst): New variable. Mark H Weaver2015-06-231-0/+31
* gnu: Add clutter-gtk.•••* gnu/packages/gnome.scm (clutter-gtk): New variable. Mark H Weaver2015-06-231-0/+28