| Commit message (Expand) | Author | Age | Files | Lines |
|---|
| ... | |
| * | gnu: deeptools: Update to 3.1.3.•••* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.3.
| Ricardo Wurmus | 2018-10-21 | 1 | -2/+2 |
| * | gnu: eolie: Update to 0.9.45.•••* gnu/packages/gnome.scm (eolie): Update to 0.9.45.
| Ricardo Wurmus | 2018-10-21 | 1 | -3/+3 |
| * | gnu: python-dendropy: Fetch from git.•••* gnu/packages/bioinformatics.scm (python-dendropy)[source]: Fetch from git.
| Ricardo Wurmus | 2018-10-21 | 1 | -6/+6 |
| * | gnu: python-py2bit: Update to 0.3.0.•••* gnu/packages/bioinformatics.scm (python-py2bit): Update to 0.3.0.
| Ricardo Wurmus | 2018-10-21 | 1 | -2/+2 |
| * | gnu: cutadapt: Update to 1.18.•••* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.18.
[inputs]: Add python-dnaio.
| Ricardo Wurmus | 2018-10-21 | 1 | -4/+5 |
| * | gnu: Add python-dnaio.•••* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
| Ricardo Wurmus | 2018-10-21 | 1 | -0/+23 |
| * | gnu: crossmap: Update to 0.2.9.•••* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.9.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
| Ricardo Wurmus | 2018-10-21 | 2 | -140/+6 |
| * | gnu: python-twobitreader: Update to 3.1.6.•••* gnu/packages/bioinformatics.scm (python-twobitreader): Update to 3.1.6.
[source]: Fetch from git.
| Ricardo Wurmus | 2018-10-21 | 1 | -9/+9 |
| * | gnu: Add python-bx-python.•••* gnu/packages/bioinformatics.scm (python-bx-python): New variable.
(python2-bx-python): Define in terms of python-bx-python.
| Ricardo Wurmus | 2018-10-21 | 1 | -10/+12 |
| * | gnu: python2-bx-python: Update to 0.8.2.•••* gnu/packages/bioinformatics.scm (python2-bx-python): Update to 0.8.2.
[source]: Remove obsolete snippet.
[inputs]: Move python2-numpy from here...
[propagated-inputs]: ...to here; add python2-six.
[native-inputs]: Add python2-lzo and python2-cython.
[home-page]: Update to new home at Github.
| Ricardo Wurmus | 2018-10-21 | 1 | -14/+10 |
| * | gnu: bwa-pssm: Fetch from git.•••* gnu/packages/bioinformatics.scm (bwa-pssm)[source]: Fetch from git.
| Ricardo Wurmus | 2018-10-21 | 1 | -5/+6 |
| * | gnu: tophat: Update to 2.1.1.•••* gnu/packages/bioinformatics.scm (tophat): Update to 2.1.1.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
| Ricardo Wurmus | 2018-10-21 | 2 | -28/+3 |
| * | gnu: linux-libre: Update to 4.18.16.•••* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.16.
(%linux-libre-hash): Update hash.
| Mark H Weaver | 2018-10-21 | 1 | -2/+2 |
| * | gnu: linux-libre@4.14: Update to 4.14.78.•••* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.78.
(%linux-libre-4.14-hash): Update hash.
| Mark H Weaver | 2018-10-21 | 1 | -2/+2 |
| * | gnu: linux-libre@4.9: Update to 4.9.135.•••* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.135.
| Mark H Weaver | 2018-10-21 | 1 | -2/+2 |
| * | gnu: linux-libre@4.4: Update to 4.4.162.•••* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.162.
| Mark H Weaver | 2018-10-21 | 1 | -2/+2 |
| * | gnu: Add emacs-slime-repl-ansi-color.•••* gnu/packages/emacs.scm (emacs-slime-repl-ansi-color): New variable.
| Pierre Neidhardt | 2018-10-21 | 1 | -0/+20 |
| * | gnu: rng-tools: Update to 6.6.•••* gnu/packages/linux.scm (rng-tools): Update to 6.6.
| Marius Bakke | 2018-10-21 | 1 | -2/+2 |
| * | gnu: fluidsynth: Update to 2.0.1.•••* gnu/packages/audio.scm (fluidsynth): Update to 2.0.1.
(fluidsynth-1): New public variable.
* gnu/packages/games.scm (gzdoom)[inputs]: Change FLUIDSYNTH to FLUIDSYNTH-1.
* gnu/packages/music.scm (lmms)[inputs]: Likewise.
| Marius Bakke | 2018-10-21 | 3 | -4/+21 |
| * | gnu: libgxps: Update to 0.3.0.•••* gnu/packages/gnome.scm (libgxps): Update to 0.3.0.
[source](patches): Remove.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
| Marius Bakke | 2018-10-21 | 2 | -53/+4 |
| * | gnu: libgxps: Propagate required inputs.•••* gnu/packages/gnome.scm (libgxps)[inputs]: Move CAIRO, GLIB and LIBARCHIVE ...
[propagated-inputs]: ... here. New field.
| Marius Bakke | 2018-10-21 | 1 | -3/+6 |
| * | gnu: re2: Update to 2018-10-01.•••* gnu/packages/regex.scm (re2): Update to 2018-10-01.
| Marius Bakke | 2018-10-21 | 1 | -2/+2 |
| * | gnu: libgphoto2: Update to 2.5.19.•••* gnu/packages/photo.scm (libgphoto2): Update to 2.5.19.
| Marius Bakke | 2018-10-21 | 1 | -2/+2 |
| * | gnu: appstream-glib: Update to 0.7.14.•••* gnu/packages/glib.scm (appstream-glib): Update to 0.7.14.
| Marius Bakke | 2018-10-21 | 1 | -2/+2 |
| * | gnu: openal: Update to 1.19.1.•••* gnu/packages/audio.scm (openal): Update to 1.19.1.
| Marius Bakke | 2018-10-21 | 1 | -2/+2 |
| * | gnu: kodi: Disable version checker.•••Fixes bug#32997.
* gnu/packages/kodi.scm (kodi)[arguments]: Add substitution to remove
the version checking configuration option.
| Efraim Flashner | 2018-10-21 | 1 | -0/+5 |
| * | gnu: python2-dendropy: Disable failing test.•••* gnu/packages/bioinformatics.scm (python2-dendropy)[arguments]: Disable
failing test.
| Ben Woodcroft | 2018-10-21 | 1 | -1/+15 |
| * | gnu: bowtie: Update to 2.3.4.3.•••* gnu/packages/bioinformatics.scm (bowtie): Update to 2.3.4.3.
[source]: Fetch from git.
[inputs]: Replace python-2 with python-wrapper; move perl, perl-clone,
perl-test-deep, and perl-test-simple from here...
[native-inputs]: ...to here.
[arguments]: Simplify check phase.
| Ricardo Wurmus | 2018-10-20 | 1 | -19/+22 |
| * | gnu: blast+: Use INVOKE and return #T unconditionally.•••* gnu/packages/bioinformatics.scm (blast+)[arguments]: Use INVOKE and
return #T unconditionally.
| Ricardo Wurmus | 2018-10-20 | 1 | -31/+28 |
| * | gnu: bedops: Update to 2.4.35.•••* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.35.
[source]: Fetch from git.
| Ricardo Wurmus | 2018-10-20 | 1 | -6/+7 |
| * | gnu: bedops: Use INVOKE.•••* gnu/packages/bioinformatics.scm (bedops)[arguments]: Use INVOKE.
| Ricardo Wurmus | 2018-10-20 | 1 | -3/+3 |
| * | gnu: bamm: Fetch from git and use INVOKE.•••* gnu/packages/bioinformatics.scm (bamm)[source]: Fetch from git.
[arguments]: Use INVOKE and return #T unconditionally.
| Ricardo Wurmus | 2018-10-20 | 1 | -9/+12 |
| * | gnu: aragorn: Use invoke and simplify.•••* gnu/packages/bioinformatics.scm (aragorn)[arguments]: Use INVOKE in build
phase; simplify install phase.
| Ricardo Wurmus | 2018-10-20 | 1 | -17/+16 |
| * | gnu: clipper: Update to 1.2.1.•••* gnu/packages/bioinformatics.scm (clipper): Update to 1.2.1.
[source]: Fetch from git.
[arguments]: Add fix-typo phase.
| Ricardo Wurmus | 2018-10-20 | 1 | -12/+18 |
| * | gnu: python-pybedtools: Update to 0.7.10.•••* gnu/packages/bioinformatics.scm (python2-pybedtools): Update to 0.7.10.
[arguments]: Disable broken tests.
[propagated-inputs]: Replace bedtools with bedtools-2.26; add
python-matplotlib, python-pysam, and python-pyyaml.
[native-inputs]: Remove python-pyyaml; add kentutils, python-numpy,
python-pandas, and python-six.
(python-pybedtools): New variable.
| Ricardo Wurmus | 2018-10-20 | 1 | -15/+70 |
| * | gnu: Add bedtools-2.26.•••* gnu/packages/bioinformatics.scm (bedtools-2.26): New variable.
| Ricardo Wurmus | 2018-10-20 | 1 | -0/+14 |
| * | gnu: cataclysm-dda: Update snapshot.•••* gnu/packages/games.scm (cataclysm-dda): Update snapshot to 0b2c194e5.
| Kei Kebreau | 2018-10-20 | 1 | -3/+3 |
| * | gnu: maxima: Update to 5.42.0.•••* gnu/packages/maths.scm (maxima): Update to 5.42.0.
| Kei Kebreau | 2018-10-20 | 1 | -2/+2 |
| * | gnu: python-glances: Update to 3.0.2.•••* gnu/packages/python.scm (python-glances): Update to 3.0.2.
| Oleg Pykhalov | 2018-10-20 | 1 | -2/+2 |
| * | gnu: emacs-hy-mode: Update to 1.0.3.•••* gnu/packages/emacs.scm (emacs-hy-mode): Update to 1.0.3.
| Oleg Pykhalov | 2018-10-20 | 1 | -2/+2 |
| * | gnu: emacs-erc-hl-nicks: Update to 1.3.3.•••* gnu/packages/emacs.scm (emacs-erc-hl-nicks): Update to 1.3.3.
| Oleg Pykhalov | 2018-10-20 | 1 | -2/+2 |
| * | gnu: emacs-yasnippet: Update to 0.13.0.•••* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.13.0.
| Oleg Pykhalov | 2018-10-20 | 1 | -2/+2 |
| * | gnu: emacs-nginx-mode: Update to 1.1.9.•••* gnu/packages/emacs.scm (emacs-nginx-mode): Update to 1.1.9.
| Oleg Pykhalov | 2018-10-20 | 1 | -2/+2 |
| * | gnu: emacs-rainbow-mode: Update to 1.0.1.•••* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 1.0.1.
| Oleg Pykhalov | 2018-10-20 | 1 | -2/+2 |
| * | gnu: emacs-smart-mode-line: Update to 2.12.0.•••* gnu/packages/emacs.scm (emacs-smart-mode-line): Update to 2.12.0.
| Oleg Pykhalov | 2018-10-20 | 1 | -2/+2 |
| * | gnu: emacs-fill-column-indicator: Update to 1.89.•••* gnu/packages/emacs.scm (emacs-fill-column-indicator): Update to 1.89.
| Oleg Pykhalov | 2018-10-20 | 1 | -2/+2 |
| * | gnu: emacs-ggtags: Update to 0.8.13.•••* gnu/packages/emacs.scm (emacs-ggtags): Update to 0.8.13.
| Oleg Pykhalov | 2018-10-20 | 1 | -2/+2 |
| * | gnu: emacs-which-key: Update to 3.3.0.•••* gnu/packages/emacs.scm (emacs-which-key): Update to 3.3.0.
| Oleg Pykhalov | 2018-10-20 | 1 | -2/+2 |
| * | gnu: Add soundconverter.•••* gnu/packages/gnome.scm (soundconverter): New variable.
* gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
| Christopher Baines | 2018-10-20 | 2 | -0/+148 |
| * | gnu: Add enchive.•••* gnu/packages/crypto.scm (enchive): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| nixo | 2018-10-19 | 1 | -0/+34 |
