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* gnu: r-restfulr: Update to 0.0.14.•••* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14. Ricardo Wurmus2022-06-131-2/+2
* gnu: Add js-mathjax-for-r-mathjaxr.•••* gnu/packages/patches/mathjax-3.1.2-no-a11y.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/javascript.scm (js-mathjax-for-r-mathjaxr): New variable. Ricardo Wurmus2022-06-132-0/+338
* gnu: python-asyncssh: Update to 2.11.0.•••* gnu/packages/ssh.scm (python-asyncssh)[version]: Update to 2.11.0. [propagated-inputs]: Add python-typing-extensions. [native-inputs]: Add python-fido2, python-aiofiles, netcat and python-pytest. [arguments]: Disable netcat autodetection. Replace 'check with call to pytest. Lars-Dominik Braun2022-06-131-6/+15
* gnu: Add python-langcodes.•••* gnu/packages/python-xyz.scm (python-langcodes): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Artyom V. Poptsov2022-06-131-0/+29
* gnu: racket: Avoid use of (ice-9 exceptions).•••Fixes <https://issues.guix.gnu.org/54546>. Reported by Giovanni Biscuolo <g@xelera.eu> and Michael Chirillo <michael.a.chirillo@gmail.com>. * gnu/packages/racket.scm (racket): Rewrite in terms of SRFI-34/35 instead of (ice-9 exceptions). Ludovic Courtès2022-06-131-9/+8
* gnu: txr: Update to 277.•••* gnu/packages/lisp.scm (txr): Update to 277. [inputs]: Add zlib. Guillaume Le Vaillant2022-06-131-3/+4
* Merge branch 'staging'Ludovic Courtès2022-06-1337-686/+644
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| * Merge branch 'master' into stagingLudovic Courtès2022-06-1247-596/+973
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| * \ Merge branch 'master' into stagingLudovic Courtès2022-06-0880-1342/+2156
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| * | | gnu: timescaledb: Adjust test preparation to PostgreSQL 13.6.•••The previous method of making a union with symlinks would work with 13.4 but not with 13.6, which has an extra 'canonicalize_path' call in 'find_my_exec'. * gnu/packages/databases.scm (timescaledb)[arguments]: In 'prepare-tests', pass #:symlink argument to 'union-build'. Ludovic Courtès2022-06-071-1/+15
| * | | gnu: postgresql@10: Fix manual compilation.•••This is a followup to f0227a18c2394d3403d0265f3c700cfd9d1ee5b4. * gnu/packages/databases.scm (postgresql-10)[native-inputs]: New field. Ludovic Courtès2022-06-051-1/+5
| * | | gnu: docbook-sgml: Add 4.2.•••* gnu/packages/docbook.scm (docbook-sgml-4.2, docbook-sgml-4.1): New variables. (docbook-sgml): Make an alias to 'docbook-sgml-4.1'. Ludovic Courtès2022-06-051-7/+22
| * | | gnu: go: Make 'make-go-std' memoizing.•••* gnu/packages/golang.scm (make-go-std): Use 'mlambdaq'. Ludovic Courtès2022-06-051-29/+33
| * | | gnu: go-std: Make public.•••* gnu/packages/golang.scm (go-std-1.14, go-std-1.16, go-std-1.17): New variables. Ludovic Courtès2022-06-051-0/+5
| * | | gnu: ruby-rails-dom-testing: Fix build.•••* gnu/packages/rails.scm (ruby-rails-dom-testing)[arguments]: Add phase to delete the Gemfile.lock. Efraim Flashner2022-06-021-1/+9
| * | | gnu: postgresql@11: Depend on docbook-xml@4.2.•••* gnu/packages/databases.scm (postgresql-11)[native-inputs]: New field. Ludovic Courtès2022-06-021-2/+5
| * | | gnu: setroot: Depend on imlib2@1.7.•••* gnu/packages/xorg.scm (setroot)[inputs]: Use IMLIB2-1.7 instead of IMLIB2. Ludovic Courtès2022-06-021-2/+2
| * | | gnu: idesk: Depend on imlib2@1.7.•••* gnu/packages/wm.scm (idesk)[inputs]: Depend on IMLIB2-1.7 instead of IMLIB2. Ludovic Courtès2022-06-021-2/+2
| * | | gnu: giblib: Depend on imlib2@1.7.•••* gnu/packages/image.scm (giblib)[inputs]: Depend on IMLIB2-1.7 instead of IMLIB2. Ludovic Courtès2022-06-021-1/+3
| * | | gnu: imlib2: Reintroduce 1.7.1.•••* gnu/packages/image.scm (imlib2-1.7): New variable. Ludovic Courtès2022-06-021-1/+14
| * | | Merge remote-tracking branch 'origin/master' into stagingEfraim Flashner2022-06-01145-13022/+7028
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| * | | | gnu: python-pyopenssl: Downgrade to 21.0.0.•••This is a follow-up to 048e05b7ef568dc5e29df774baaf69f7cc5ddaaa. * gnu/packages/python-crypto.scm (python-pyopenssl): Downgrade to 21.0.0. [source]: Add patch used by python2-pyopenssl. [properties]: Remove field. (python2-pyopenssl): Inherit from python-pyopenssl regularly. Efraim Flashner2022-05-311-15/+5
| * | | | gnu: python2-cryptography: Update to 3.3.2.•••* gnu/packages/python-crypto.scm (python2-cryptography-vectors, python2-cryptography): Update to 3.3.2. Efraim Flashner2022-05-301-4/+5
| * | | | gnu: python-cryptography: Downgrade to 3.4.8.•••Skip dealing with the rust version for now. * gnu/packages/python-crypto.scm (python-cryptography): Rename to python-cryptography-next. Replace with python-cryptography@3.4.8. (python-cryptography-vectors): Rename to python-cryptography-vectors-next. Replace with python-cryptography-vectors@3.4.8. Efraim Flashner2022-05-301-3/+37
| * | | | Merge branch 'master' into stagingLudovic Courtès2022-05-26108-2830/+5267
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| * | | | | gnu: emacs: Add libselinux to inputs.•••* gnu/packages/emacs.scm (emacs)[inputs]: Add libselinux to support extended attributes. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> wednesday2022-05-211-1/+2
| * | | | | gnu: emacs: Add lcms to inputs.•••* gnu/packages/emacs.scm (emacs)[inputs]: Add lcms. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> wednesday2022-05-211-0/+1
| * | | | | Merge branch 'master' into stagingEfraim Flashner2022-05-1679-3324/+8160
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| * | | | | | gnu: openfst: Update to 1.8.2, enable ngram extension•••This extension is required by some programs that depend on openfst that aren't yet packaged. * gnu/packages/machine-learning.scm (openfst): Update to 1.8.2. [arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aurora2022-05-151-2/+3
| * | | | | | gnu: openfst-1.7.3: Enable ngram-fst extension & C++14 build•••The extension doesn't build in old versions of openfst such as 1.7.3 without manually setting CXXFLAGS. This package definition, including this workaround to build extensions successfully, will need to be removed once kaldi is fixed upstream and can be used with up-to-date versions of openfst. * gnu/packages/machine-learning.scm (openfst-1.7.3)[arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aurora2022-05-151-1/+3
| * | | | | | gnu: kaldi: Update to dd107fd, bypass tests•••Either kaldi's tests are broken or openblas has reintroduced a bug: - https://github.com/kaldi-asr/kaldi/pull/4421 More testing & fixes required upstream to re-enable the tests later. For now they'll just have to be ignored. * gnu/packages/machine-learning.scm (kaldi): Update to dd107fd. [arguments]: In 'configure' phase, modify "matrix/Makefile". Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aurora2022-05-151-3/+6
| * | | | | | gnu: openfst: Add 1.7.3 for kaldi•••Kaldi is currently broken with openfst versions newer than 1.7.3 as it changed some of its function signatures. Once Kaldi is patched/fixed, this should be removed. Reference Issues: - https://github.com/kaldi-asr/kaldi/issues/4131 - https://github.com/kaldi-asr/kaldi/issues/4393 * gnu/packages/machine-learning.scm (openfst-1.7.3): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aurora2022-05-151-0/+13
| * | | | | | gnu: openblas: Remove input labels.•••* gnu/packages/maths.scm (openblas)[inputs, native-inputs]: Remove labels. [arguments]: In 'set-extralib' phase, use 'search-input-file'. Ludovic Courtès2022-05-151-6/+6
| * | | | | | gnu: openblas: Update to 0.3.20•••* gnu/packages/maths.scm (openblas): Update to 0.3.20. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aurora2022-05-151-2/+2
| * | | | | | gnu: perl-net-ssleay: Update to 1.92.•••* gnu/packages/tls.scm (perl-net-ssleay): Update to 1.92. Efraim Flashner2022-05-151-3/+3
| * | | | | | gnu: mesa: Remove input labels.•••* gnu/packages/gl.scm (mesa)[inputs, native-inputs]: Remove labels. (mesa-opencl)[inputs-, native-inputs]: Likewise, and use 'modify-inputs'. Ludovic Courtès2022-05-151-33/+31
| * | | | | | gnu: mesa: Update to 21.3.8.•••* gnu/packages/gl.scm (mesa): Update to 21.3.8. Ludovic Courtès2022-05-151-2/+2
| * | | | | | gnu: wayland: Update to 1.20.0.•••* gnu/packages/freedesktop.scm (wayland): Update to 1.20.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Wamm K. D2022-05-141-2/+2
| * | | | | | gnu: extra-cmake-modules: Update to 5.91.0.•••* gnu/packages/kde-frameworks.scm (extra-cmake-modules): Update to 5.91.0. Fix the indentation. [native-inputs]: Use label-less input style. [arguments]: Use G-expresssions. <phases>: In phase 'fix-lib-path', use QT_MAJOR_VERSION to determine the installation path, Fix the compatibility with different Qt version. Add phase 'fix-test' to workaround with the broken KDEFetchTranslations test. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Zhu Zihao2022-05-111-34/+50
| * | | | | | gnu: python-cryptography: Bump 'rust-redox-syscall' dependency.•••Fixes a build failure. * gnu/packages/python-crypto.scm (python-cryptography): Replace 'rust-redox-syscall-0.1' with 'rust-redox-syscall-0.2'. Ludovic Courtès2022-05-111-1/+1
| * | | | | | gnu: rust-parking-lot-core@0.8: Fix compilation.•••Fixes a build failure introduced in d16298196c23cf4d05c4010af399270a2dbbd831. * gnu/packages/crates-io.scm (rust-parking-lot-core-0.8): Update dependencies as reported by "guix import crate parking-lot-core@0.8.4". Add 'relax-dependencies' phase. Ludovic Courtès2022-05-111-5/+12
| * | | | | | gnu: rust-thread-id: Add 4.0.0.•••* gnu/packages/crates-io.scm (rust-thread-id-4): New variable. (rust-thread-id-3): Inherit from it. Ludovic Courtès2022-05-111-8/+26
| * | | | | | gnu: rust-instant: Fix dependencies.•••Fixes a build failure introduced in bec6bf64bcbcf559eb0b91abcb7f3b2488916797. * gnu/packages/crates-io.scm (rust-instant-0.1)[arguments]: Adjust inputs as per "guix import crate rust@0.1.9". Ludovic Courtès2022-05-111-3/+4
| * | | | | | gnu: polkit: Remove input labels.•••* gnu/packages/polkit.scm (polkit-mozjs)[native-inputs]: Remove labels. (polkit-duktape)[native-inputs, inputs]: Use 'modify-inputs'. Ludovic Courtès2022-05-111-13/+11
| * | | | | | gnu: polkit: Incorporate security fix and remove replacement.•••* gnu/packages/polkit.scm (polkit-mozjs)[replacement]: Remove. [source]: Add "polkit-CVE-2021-4034.patch". (polkit-mozjs/fixed): Remove. Ludovic Courtès2022-05-111-12/+2
| * | | | | | gnu: mrustc: Update to 0.10.•••And enable rust for aarch64-linux! * gnu/packages/rust.scm (%mrustc-commit): Update hash. (%mrustc-source): Update to 0.10. (rust-1.39)[arguments]: Move and adapt the substitute* that prevent fetching sources. Patch /bin/sh in run_rustc/rustc_proxy.sh. [supported-systems]: Add aarch64-linux. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Pierre Langlois2022-05-091-11/+13
| * | | | | | Merge branch 'master' into stagingLudovic Courtès2022-05-0985-19213/+3453
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| * | | | | | | gnu: libgit2: Work around time-dependent unit test.•••Fixes <https://issues.guix.gnu.org/55326>. * gnu/packages/version-control.scm (libgit2)[source]: Augment 'snippet' to modify "tests/refs/revparse.c". Ludovic Courtès2022-05-081-1/+10
| * | | | | | | gnu: texlive-stmaryrd: Incorporate and remove replacement.•••* gnu/packages/tex.scm (texlive-stmaryrd)[replacement]: Remove. [arguments]: Add 'unchdir' and 'delete-extra-files' phases. (texlive-stmaryrd/fixed): Remove. Ludovic Courtès2022-05-081-22/+9
| * | | | | | | gnu: texlive-psnfss: Incorporate and remove replacement.•••* gnu/packages/tex.scm (texlive-psnfss)[replacement]: Remove. [arguments]: Add 'unchdir' and 'delete-extra-files' phases. (texlive-psnfss/fixed): Remove. Ludovic Courtès2022-05-081-20/+9