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* gnu: gama: Update to 2.19.•••* gnu/packages/gps.scm (gama): Update to 2.19. Efraim Flashner2022-04-291-2/+2
* gnu: Add Avizo.•••* gnu/packages/wm.scm (avizo): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Pier-Hugues Pellerin2022-04-292-0/+31
* gnu: openssh: Trust Guix store directory•••* gnu/local.mk (dist_patch_DATA): Add the patch * gnu/packages/patches/openssh-trust-guix-store-directory.patch: Patch it * gnu/packages/ssh.scm (openssh[source]): Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alexey Abramov2022-04-292-1/+47
* gnu: rust-pyo3: Allow compilation with Criterion 0.3.5.•••Fixes a regression introduced in 2703daf6eb0098ad064a9b6ec64a9ae7b5b35343. * gnu/packages/crates-io.scm (rust-pyo3-0.15)[modules, snippet]: New fields. Ludovic Courtès2022-04-281-1/+8
* gnu: flatpak: Do not leak GDK_PIXBUF_MODULE_FILE into the sandbox.•••Fixes <https://issues.guix.gnu.org/54784>. * gnu/packages/patches/flatpak-unset-gdk-pixbuf-for-sandbox.patch: New file. * gnu/local.mk (dist_patch_DATA): Add corresponding entry. * gnu/packages/package-management.scm (flatpak)[source]: Use patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Zhu Zihao2022-04-282-1/+22
* gnu: flatpak: Use G-expressions.•••* gnu/packages/package-management.scm (flatpak): Fix indentation. [arguments]: Use G-expressions. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Zhu Zihao2022-04-281-93/+94
* gnu: Add r-guix-install.•••* gnu/packages/cran.scm (r-guix-install): New variable. Ricardo Wurmus2022-04-281-0/+28
* gnu: mercury: Selectively import match-lambda from ice9 module.•••* gnu/packages/mercury.scm (mercury): Use #:select instead of a comment string for importing match-lambda. Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name> jgart2022-04-271-1/+1
* gnu: linux-libre 4.9: Update to 4.9.312.•••* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.312. (linux-libre-4.9-pristine-source): Update hash. Leo Famulari2022-04-271-2/+2
* gnu: linux-libre 4.14: Update to 4.14.277.•••* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.277. (linux-libre-4.14-pristine-source): Update hash. Leo Famulari2022-04-271-2/+2
* gnu: linux-libre 4.19: Update to 4.19.240.•••* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.240. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari2022-04-271-2/+2
* gnu: linux-libre 5.4: Update to 5.4.191.•••* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.191. (linux-libre-5.4-pristine-source): Update hash. Leo Famulari2022-04-271-2/+2
* gnu: linux-libre 5.10: Update to 5.10.113.•••* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.113. (linux-libre-5.10-pristine-source): Update hash. Leo Famulari2022-04-271-2/+2
* gnu: linux-libre 5.15: Update to 5.15.36.•••* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.36. (linux-libre-5.15-pristine-source): Update hash. Leo Famulari2022-04-271-2/+2
* gnu: linux-libre: Update to 5.17.5.•••* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.5. (linux-libre-5.17-pristine-source): Update hash. Leo Famulari2022-04-271-2/+2
* gnu: conan: Use python-pyyaml@5.•••* gnu/packages/package-management.scm (conan)[propagated-inputs]: Replace python-pyyaml by python-yyaml-5. Signed-off-by: Ludovic Courtès <ludo@gnu.org> zimoun2022-04-271-1/+1
* gnu: docker-compose: Use python-pyyaml@5.•••* gnu/packages/docker.scm (docker-compose)[inputs]: Replace python-pyyaml by python-pyyaml-5. Signed-off-by: Ludovic Courtès <ludo@gnu.org> zimoun2022-04-271-1/+1
* gnu: python-pyyaml: Reintroduce 5.4.•••* gnu/packages/python-xyz.scm (python-pyyaml-5): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> zimoun2022-04-271-0/+12
* gnu: Add hyfetch.•••* gnu/packages/admin.scm (hyfetch): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Wamm K. D2022-04-271-0/+27
* gnu: Add python-hypy-utils.•••* gnu/packages/python-xyz.scm (python-hypy-utils): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Wamm K. D2022-04-271-0/+18
* gnu: Add r-agilp.•••* gnu/packages/bioconductor.scm (r-agilp): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-04-271-0/+22
* gnu: Add r-aggregatebiovar.•••* gnu/packages/bioconductor.scm (r-aggregatebiovar): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-04-271-0/+34
* gnu: Add r-agdex.•••* gnu/packages/bioconductor.scm (r-agdex): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-04-271-0/+27
* gnu: Add r-affyrnadegradation.•••* gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-04-271-0/+25
* gnu: Add r-affixcan.•••* gnu/packages/bioconductor.scm (r-affixcan): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-04-271-0/+28
* gnu: Add r-adsplit.•••* gnu/packages/bioconductor.scm (r-adsplit): New variable. Mădălin Ionel Patrașcu2022-04-271-0/+28
* gnu: Add r-adimpute.•••* gnu/packages/bioconductor.scm (r-adimpute): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-04-271-0/+49
* gnu: Add r-saver.•••* gnu/packages/cran.scm (r-saver): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-04-271-0/+35
* gnu: git: Update to 2.36.0 [fixes CVE-2022-24765].•••See: https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2022-24765. * gnu/packages/version-control.scm (git): Update to 2.36.0. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Zhu Zihao2022-04-271-3/+3
* gnu: Add python-mike.•••* gnu/packages/python-xyz.scm (python-mike): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Vincent Prat2022-04-271-0/+23
* gnu: Add worklog.•••* gnu/packages/task-management.scm (worklog): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Foo Chuan Wei2022-04-271-0/+35
* gnu: Add wtime.•••* gnu/packages/task-management.scm (wtime): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Foo Chuan Wei2022-04-271-0/+38
* gnu: shotcut: Update to 22.04.25.•••* gnu/packages/video.scm (shotcut): Update to 22.04.25. Vinicius Monego2022-04-271-2/+2
* gnu: emacs-elpher: Update to 3.3.3.•••* gnu/packages/emacs-xyz.scm (emacs-elpher): Update to 3.3.3. Vinicius Monego2022-04-261-2/+2
* gnu: emacs-org-roam: Update to 2.2.2.•••* gnu/packages/emacs-xyz.scm (emacs-org-roam): Update to 2.2.2. Vinicius Monego2022-04-261-2/+2
* gnu: emacs-org-re-reveal: Update to 3.13.0.•••* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.13.0. Vinicius Monego2022-04-261-2/+2
* gnu: emacs-vertico: Update to 0.23.•••* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.23. Vinicius Monego2022-04-261-2/+2
* gnu: emacs-consult: Update to 0.17.•••* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.17. Vinicius Monego2022-04-261-2/+2
* gnu: emacs-corfu: Add new phase after unpack.•••* gnu/packages/emacs-xyz.scm (emacs-corfu)[arguments]<#:phases>: After the unpack phase add a move-source-files phase. Vinicius Monego2022-04-261-0/+11
* gnu: emacs-corfu: Update to 0.22.•••* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.22. Signed-off-by: Vinicius Monego <monego@posteo.net> jgart2022-04-261-2/+3
* gnu: Add r-adamgui.•••* gnu/packages/bioconductor.scm (r-adamgui): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-04-261-0/+48
* gnu: Add bart.•••* gnu/packages/image-processing.scm (bart): New variable. Ricardo Wurmus2022-04-261-1/+52
* gnu: gfeeds: Make it start.•••This change patches the version of WebKit required by the program to a version available in Guix, so that the program actually starts. * gnu/packages/syndication.scm (gfeeds)[arguments]: Require WebKit2 4.1 instead of 4.0, which is not available. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Luis Felipe2022-04-261-0/+6
* gnu: rtl8821ce-linux-module: Update to 0.0.0-5-dce62b9.•••Fixes the broken build with linux-libre 5.17.x. * gnu/packages/linux.scm (rtl8821ce-linux-module): Update to 0.0.0-5-dce62b9. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Zhu Zihao2022-04-261-3/+3
* gnu: zfs: Update to 2.1.4.•••* gnu/packages/file-systems.scm (zfs): Update to 2.1.4. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Brian Cully2022-04-261-2/+3
* gnu: nomad-optimizer: Disable failing test.•••* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Disable the examples/advanced/library/PSDMads test. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Paul A. Patience2022-04-261-5/+5
* gnu: Add r-giotto.•••* gnu/packages/bioinformatics.scm (r-giotto): New variable. Ricardo Wurmus2022-04-261-0/+58
* gnu: Add r-lfa.•••* gnu/packages/bioconductor.scm (r-lfa): New variable. Ricardo Wurmus2022-04-261-0/+21
* gnu: Add r-dbscan.•••* gnu/packages/cran.scm (r-dbscan): New variable. Ricardo Wurmus2022-04-261-0/+29
* gnu: Add r-adam.•••* gnu/packages/bioconductor.scm (r-adam): New variable. Mădălin Ionel Patrașcu2022-04-261-0/+35
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