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* gnu: Add r-rcistarget.Ricardo Wurmus2019-08-151-0/+35
| | | | * gnu/packages/bioconductor.scm (r-rcistarget): New variable.
* gnu: Add r-lda.Ricardo Wurmus2019-08-151-0/+24
| | | | * gnu/packages/cran.scm (r-lda): New variable.
* gnu: Add r-liger.Ricardo Wurmus2019-08-151-0/+74
| | | | * gnu/packages/cran.scm (r-liger): New variable.
* gnu: Add r-patchwork.Ricardo Wurmus2019-08-151-0/+31
| | | | * gnu/packages/cran.scm (r-patchwork): New variable.
* gnu: Add r-rann-l1.Ricardo Wurmus2019-08-151-0/+23
| | | | * gnu/packages/cran.scm (r-rann-l1): New variable.
* Revert "gnu: libinput: Update to 1.14.0."Rutger Helling2019-08-151-2/+2
| | | | | This reverts commit dfdd7380a164217fec6bca0f91ebcf32ade33cb4. libinput-minimal causes too many rebuilds.
* gnu: libinput: Update to 1.14.0.Rutger Helling2019-08-151-2/+2
| | | | * gnu/packages/freedesktop.scm (libinput): Update to 1.14.0.
* gnu: Add itk-snap.Ricardo Wurmus2019-08-151-0/+139
| | | | * gnu/packages/image-processing.scm (itk-snap): New variable.
* gnu: Add insight-toolkit-4.12.Ricardo Wurmus2019-08-151-0/+11
| | | | * gnu/packages/image-processing.scm (insight-toolkit-4.12): New variable.
* gnu: Add insight-toolkit-4.Ricardo Wurmus2019-08-151-0/+20
| | | | * gnu/packages/image-processing.scm (insight-toolkit-4): New variable.
* gnu: Add insight-toolkit.Ricardo Wurmus2019-08-151-0/+63
| | | | * gnu/packages/image-processing.scm (insight-toolkit): New variable.
* gnu: Add vxl-1.Ricardo Wurmus2019-08-151-0/+31
| | | | * gnu/packages/image-processing.scm (vxl-1): New variable.
* gnu: Add vxl.Ricardo Wurmus2019-08-151-0/+43
| | | | * gnu/packages/image-processing.scm (vxl): New variable.
* gnu: Add vtk-6.Ricardo Wurmus2019-08-151-2/+19
| | | | * gnu/packages/image-processing.scm (vtk-6): New variable.
* gnu: mingw: Add x86_64 support.Carl Dong2019-08-143-53/+66
| | | | | | | | | | | | | | | | | | | | This patch parameterizes previously hard-coded instances of i686-w64-mingw32, adding support for x86_64-w64-mingw32. * gnu/packages/mingw.scm (make-mingw-w64): New procedure. (mingw-w64-i686, mingw-w64-x86_64): New variables. (%mingw-triplet): Remove. (mingw-w64): Update to point to 'mingw-w64-i686'. * gnu/packages/cross-base.scm (cross-gcc): Use 'libc' keyword argument if specified, instead of treating it as a boolean. (native-libc): Return the correct mingw-w64 depending on machine specified in target. * gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add "x86_64-mingw". * gnu/build/cross-toolchain.scm (set-cross-path/mingw): Replace hardcoded 'i686-w64-mingw32' instances with 'target' keyword argument. (cross-gcc-build-phases): Update accordingly; use 'target-mingw?' implementation of target checking and add commentary. * gnu/ci.scm (%cross-targets): Add "x86_64-w64-mingw32".
* gnu: onionshare: Upgrade to 2.1.Eric Bavier2019-08-131-10/+11
| | | | | | | | * gnu/packages/tor.scm (onionshare): Upgrade to 2.1. [arguments]: Rename "tests" phase to "check". Set home directory for tests. Remove reference to closed upstream bug. [inputs]: Add python-pycrypto and python-pysocks. [license]: Remove bsd-3 license; relevant file no longer present.
* gnu: Blender: Use opensubdiv.Carlo Zancanaro2019-08-131-0/+2
| | | | | | | | | Fixes <https://bugs.gnu.org/36977>. * gnu/packages/graphics.scm (blender)[inputs]: Add opensubdiv. [arguments]: Add "-DWITH_OPENSUBDIV=ON" to #:configure-flags. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add opensubdiv.Carlo Zancanaro2019-08-131-0/+45
| | | | | | * gnu/packages/graphics.scm (opensubdiv): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* Merge branch 'staging'Marius Bakke2019-08-1322-111/+110
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| * Revert "gnu: python-packaging: Update to 19.1."Marius Bakke2019-08-111-2/+2
| | | | | | | | | | | | The new version fails tests on architectures other than x86_64. This reverts commit cb16a9fba9f1b28bde63daaa1bf241c130d2caad.
| * Merge branch 'master' into stagingMarius Bakke2019-08-0818-477/+879
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| * | gnu: postgresql: Udpate to 10.10 [fixes CVE-2019-10208].Marius Bakke2019-08-081-2/+2
| | | | | | | | | | | | * gnu/packages/databases.scm (postgresql): Update to 10.10.
| * | Merge branch 'master' into stagingMarius Bakke2019-08-0839-2689/+4283
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| * | | gnu: mesa: Update to 19.1.4.Marius Bakke2019-08-071-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/gl.scm (mesa): Update to 19.1.4.
| * | | gnu: nss: Fix build failure on armhf-linux.Marius Bakke2019-08-062-0/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes <https://bugs.gnu.org/36930>. * gnu/packages/patches/nss-freebl-stubs.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/nss.scm (nss)[source](patches): Add it.
| * | | gnu: wine: Adapt Intel Vulkan on i686-linux.Rutger Helling2019-08-051-6/+22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/wine.scm (wine)[arguments]: Adjust to also provide Vulkan on i686-linux for Intel. * gnu/packages/wine.scm (wine64)[arguments]: Adjust to also provide Vulkan on i686-linux for Intel. * gnu/packages/wine.scm (wine-staging)[arguments]: Adjust to also provide Vulkan on i686-linux for Intel. * gnu/packages/wine.scm (wine64-staging)[arguments]: Adjust to also provide Vulkan on i686-linux for Intel.
| * | | gnu: mesa: Enable Intel 32-bit Vulkan drivers.Rutger Helling2019-08-051-4/+1
| | | | | | | | | | | | | | | | | | | | * gnu/packages/gl.scm (mesa)[arguments]: Also build Vulkan drivers for Intel on i686-linux.
| * | | gnu: python-mako: Update to 1.1.0.Marius Bakke2019-08-041-3/+7
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-mako): Update to 1.1.0. [arguments]: New field. [native-inputs]: Remove PYTHON-NOSE.
| * | | gnu: flac: Update to 1.3.3.Marius Bakke2019-08-042-32/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/xiph.scm (flac): Update to 1.3.3. [source](patches): Remove. * gnu/packages/patches/flac-CVE-2017-6888.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
| * | | gnu: libpciaccess: Update to 0.16.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/xorg.scm (libpciaccess): Update to 0.16.
| * | | gnu: nss, nss-certs: Update to 3.45.Marius Bakke2019-08-042-4/+4
| | | | | | | | | | | | | | | | | | | | * gnu/packages/certs.scm (nss-certs): Update to 3.45. * gnu/packages/nss.scm (nss): Likewise.
| * | | gnu: python-packaging: Update to 19.1.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-packaging): Update to 19.1.
| * | | gnu: perl-cgi: Update to 4.44.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/web.scm (perl-cgi): Update to 4.44.
| * | | gnu: perl-http-message: Update to 6.18.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/web.scm (perl-http-message): Update to 6.18.
| * | | gnu: libva: Update to 2.5.0.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/video.scm (libva): Update to 2.5.0.
| * | | gnu: gtk+: Update to 3.24.10.Marius Bakke2019-08-041-4/+2
| | | | | | | | | | | | | | | | * gnu/packages/gtk.scm (gtk+): Update to 3.24.10.
| * | | gnu: cups-filters: Update to 1.25.1.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/cups.scm (cups-filters): Update to 1.25.1.
| * | | gnu: subversion: Update to 1.10.6 [fixes CVE-2018-11782, CVE-2019-0203].Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/version-control.scm (subversion): Update to 1.10.6.
| * | | gnu: mariadb: Update to 10.1.41 [security fixes].Marius Bakke2019-08-041-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | This fixes CVE-2019-2805, CVE-2019-2740, CVE-2019-2739, and CVE-2019-2737. * gnu/packages/databases.scm (mariadb): Update to 10.1.41. [source](uri): Update download URL.
| * | | gnu: python-mako: Update to 1.0.14.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-mako): Update to 1.0.14.
| * | | gnu: python-cython: Update to 0.29.13.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-cython): Update to 0.29.13.
| * | | gnu: ImageMagick: Update to 6.9.10-58.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-58.
| * | | gnu: libwebp: Update to 1.0.3.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/image.scm (libwebp): Update to 1.0.3.
| * | | gnu: MariaDB: Disable the TokuDB plugin.Marius Bakke2019-08-041-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes <https://bugs.gnu.org/35521>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages/databases.scm (mariadb)[arguments]: Pass "-DTOKUDB_OK" in <#:configure-flags>. Enable the "innodb_fts.crash_recovery" test, which likely failed because of the high I/O load induced by TokuDB. [inputs]: Remove SNAPPY. (cherry picked from commit bba7a77ed9ad826bcdc6d9b8a183d66a23229501)
| * | | gnu: python-cython: Speed up test suite.Marius Bakke2019-08-041-1/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-cython)[arguments]: In the CHECK phase, disable compiler optimizations and enable (some) parallel tests. (cherry picked from commit e9194eb04896165f15830862c42673e96bc5c5f7)
| * | | gnu: perl-try-tiny: Update to 0.30.Marius Bakke2019-08-041-3/+3
| | | | | | | | | | | | | | | | * gnu/packages/perl.scm (perl-try-tiny): Update to 0.30.
| * | | gnu: double-conversion: Update to 3.1.5.Marius Bakke2019-08-041-2/+2
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (double-conversion): Update to 3.1.5.
| * | | gnu: Remove pcre2/fixed.Marius Bakke2019-08-042-14/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/pcre.scm (pcre2/fixed): Remove variable. (pcre2)[replacement]: Remove. [source](patches): New field. * gnu/packages/php.scm (php)[inputs]: Change PCRE2/FIXED to PCRE2.
| * | | Merge branch 'master' into stagingMarius Bakke2019-08-0449-458/+2271
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| * | | | gnu: glu: Update to 9.0.1.Rutger Helling2019-07-301-2/+2
| | | | | | | | | | | | | | | | | | | | * gnu/packages/gl.scm (glu): Update to 9.0.1.
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