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* gnu: linux-libre: Update to 4.11.4.•••* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.4. (%linux-libre-hash): Update hash. Mark H Weaver2017-06-091-2/+2
* gnu: linux-libre@4.9: Update to 4.9.31.•••* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.31. Mark H Weaver2017-06-091-2/+2
* gnu: linux-libre@4.4: Update to 4.4.71.•••* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.71. Mark H Weaver2017-06-091-2/+2
* gnu: Add tadbit.•••* gnu/packages/bioinformatics.scm (tadbit): New variable. Ricardo Wurmus2017-06-091-0/+58
* gnu: Add imp.•••* gnu/packages/bioinformatics.scm (imp): New variable. Ricardo Wurmus2017-06-091-0/+48
* gnu: Add phylip.•••* gnu/packages/bioinformatics.scm (phylip): New variable. Ricardo Wurmus2017-06-091-0/+37
* gnu: Add gess.•••* gnu/packages/bioinformatics.scm (gess): New variable. Ricardo Wurmus2017-06-091-0/+61
* gnu: Add trim-galore.•••* gnu/packages/bioinformatics.scm (trim-galore): New variable. Ricardo Wurmus2017-06-091-0/+60
* gnu: Add ritornello.•••* gnu/packages/bioinformatics.scm (ritornello): New variable. Ricardo Wurmus2017-06-091-0/+45
* gnu: Add r-fdrtool.•••* gnu/packages/statistics.scm (r-fdrtool): New variable. Ricardo Wurmus2017-06-091-0/+28
* gnu: Add r-lubridate.•••* gnu/packages/statistics.scm (r-lubridate): New variable. Ricardo Wurmus2017-06-091-0/+26
* gnu: crawl: Update to 0.20.0.•••* gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.20.0. Kei Kebreau2017-06-081-2/+2
* gnu: raptor2: Fix heap overflow bug.•••* gnu/packages/patches/raptor2-heap-overflow.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/rdf.scm (raptor2): Use it. Marius Bakke2017-06-092-0/+53
* gnu: artanis: Update to 0.2.1.•••* gnu/packages/guile.scm (artanis): Update to 0.2.1. [inputs]: Switch to GUILE-2.2. [arguments]: Adjust #:make-flags for Guile 2.2. Take .go files from lib/guile/2.2. Add 'wrap-art' phase. * gnu/packages/patches/artanis-fix-Makefile.in.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès2017-06-082-80/+19
* gnu: gnuastro: Update to 0.3.•••* gnu/packages/astronomy.scm (gnuastro): Update to 0.3. Adjust as suggested by 'guix lint'. Ludovic Courtès2017-06-081-3/+3
* gnu: php: Update to 7.1.6.•••* gnu/packages/php.scm (php): Update to 7.1.6. Julien Lepiller2017-06-081-2/+2
* gnu: minetest: Update to 0.4.16.•••* gnu/packages/games.scm (minetest-data, minetest): Update to 0.4.16. Kei Kebreau2017-06-081-4/+4
* gnu: certbot, python-acme: Update to 0.15.0.•••* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.15.0. (python-acme, python2-acme)[arguments]: Remove 'patch-dependency' phase. This issue was fixed upstream: https://github.com/certbot/certbot/commit/d0e471dc8093bd0d08c5a739e5cf9677240d9c0e Leo Famulari2017-06-081-11/+3
* gnu: kde.scm, kde-frameworks.scm: Add and update comments.•••* gnu/packages/kde-frameworks.scm (kpackage,plasma-framework)[arguments]: Update comment (number of failed tests). (kdeclarative)[arguments]<#:phases>: Update comment. (bluez-qt,knotifications,kpty,ktexteditor,ktextwidgets,solid)[inputs]: Add a todo comment. (kguiaddons): Add a todo comment. (phonon)[native-inputs]: Add a todo comment. * gnu/packages/kde-frameworks.scm (kauth)[arguments]<#:phases>: Add a todo comment. Hartmut Goebel2017-06-082-4/+21
* gnu: kwindowsystem: Fix some test-cases (test-suite still disabled).•••Make five tests pass, three are still failing – thus the test-suite is still disabled. This commit's aim is to retain the progress. * gnu/packages/kde-frameworks.scm (kwindowsystem)[native-inputs]: Add dbus. [arguments]<#:test?>: Change comment. <#:phases>: Replace phase `check` by new one befind 'install'. Hartmut Goebel2017-06-081-1/+26
* gnu: kwidgetsaddons: Re-enable tests.•••* gnu/packages/kde-frameworks.scm (kwidgetsaddons)[arguments]: Test-suite is now passing; reenable it. Hartmut Goebel2017-06-081-2/+1
* gnu: kiconthemes: Re-enable tests.•••* gnu/packages/kde-frameworks.scm (kiconthemes)[arguments]: Test-suite is now passing; reenable it. Hartmut Goebel2017-06-081-2/+1
* gnu: kwallet: Use gpgme instead of gpgmepp.•••The C++-bindings are part of gpgme since version 1.7. * gnu/packages/kde-frameworks.scm(kwallet)[inputs]: Replace gpgmepp by gpgme. Hartmut Goebel2017-06-081-1/+1
* gnu: gpgmepp: Superseded by gpgme.•••The C++-bindings are part of gpgme since version 1.7. * gnu/packages/kde-frameworks.scm (gpgmepp)[properties]: New field. Hartmut Goebel2017-06-081-1/+2
* gnu: sonnet: Add optional input (spell-checker).•••* gnu/packages/kde-frameworks.scm (sonnet)[inputs]: Add hunspell; add todo comment for other language's spell-checker. Hartmut Goebel2017-06-081-1/+4
* gnu: kpackage: Add more optional inputs.•••* gnu/packages/kde-frameworks.scm (kpackage)[inputs]: Add kdoctools. Hartmut Goebel2017-06-081-0/+1
* gnu: plasma-framework: Add more optional inputs.•••* gnu/packages/kde-frameworks.scm (plasma-frameworks)[native-inputs]: Add pkg-config. [inputs]: Add kwayland. Hartmut Goebel2017-06-081-1/+3
* gnu: ktexteditor: Add more optional inputs.•••* gnu/packages/kde-frameworks.scm (ktexteditor)[native-inputs]: Add pkg-config. Hartmut Goebel2017-06-081-1/+2
* gnu: kinit: Add more optional inputs.•••* gnu/packages/kde-frameworks.scm (kinit) [native-inputs]: Add pkg-config. [inputs]: Add kdoctools, libcap. Hartmut Goebel2017-06-081-1/+4
* gnu: kio: Add more optional and recommended inputs.•••* gnu/packages/kde-frameworks.scm (kio)[inputs]: Add mit-krb5, qtscript. Hartmut Goebel2017-06-081-0/+3
* gnu: kimageformats: Add more optional and recommended inputs.•••* gnu/packages/kde-frameworks.scm (kimageformats) [native-inputs]: Add pkg-config. [inputs]: Add karchive, openexr. [arguments]<#:configure-flags>: Set include-flags. Hartmut Goebel2017-06-081-3/+14
* gnu: kde frameworks: Avoid requiring xorg-server for tests.•••Some packages started a x.org server for testing, which can be avoided by setting QT_QPA_PLATFORM=offscreen. * gnu/packages/kde-frameworks.scm (kitemmodels) [native-inputs]: Remove xorg-server. [arguments]<#phases> 'start-xorg-server' replace by 'check-setup'. (kplotting, kcrash, kimageformats): Likewise. (kitemviews)[native-inputs]: Remove xorg-server. [arguments]<#phases> 'start-xorg-server': Remove phase; 'check-setup': set QT_QPA_PLATFORM=offscreen. Hartmut Goebel2017-06-081-41/+23
* gnu: kcompletion: Remove unused native input.•••The xorg server is not required since change 548f99b3e0d3647f29ddc3c3864ca36b655f14ec. * gnu/packages/kde-frameworks.scm (kcompletion)[native-inputs]: Remove xorg-server. Hartmut Goebel2017-06-081-2/+1
* gnu: kitemmodels: Add more optional inputs.•••* gnu/packages/kde-frameworks.scm (kitemmodels)[inputs]: Add qtdeclarative. Hartmut Goebel2017-06-081-1/+2
* gnu: kguiaddons: Remove unused native input.•••The xorg server is not required since change 1de5b667f896aa2c612416bffac5f77cae94c5f4. * gnu/packages/kde-frameworks.scm (kguiaddons)[native-inputs]: Remove xorg-server. Hartmut Goebel2017-06-081-2/+1
* gnu: kguiaddons: Add more optional inputs.•••* gnu/packages/kde-frameworks.scm (kguiaddons) [native-inputs]: Add pkg-config. [inputs]:Add qtx11extras. Hartmut Goebel2017-06-081-1/+3
* gnu: gnome-shell: Fix startup failure.•••Fixes <https://bugs.gnu.org/27264>. * gnu/packages/gnome.scm (gnome-shell)[inputs]: Add LIBRSVG and GEOCLUE. Marius Bakke2017-06-081-0/+4
* gnu: geoclue: Create typelib files.•••* gnu/packages/gnome.scm (geoclue)[native-inputs]: Add GOBJECT-INTROSPECTION. Marius Bakke2017-06-081-0/+1
* gnu: emacs: Fix ert-runner by adding 'reporters' subdirectory.•••Previous this change, ert-runner would fail with error: "Invalid reporter: dot". * gnu/packages/emacs.scm (ert-runner)[include]: Add regexp to match elisp files under the 'reporters' subdirectory. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Maxim Cournoyer2017-06-081-1/+2
* gnu: Add nftables.•••* gnu/packages/linux.scm (nftables): New variable Signed-off-by: Kei Kebreau <kei@openmailbox.org> Rutger Helling2017-06-081-0/+31
* gnu: the-silver-searcher: Update to 2.0.0.•••* gnu/packages/code.scm (the-silver-searcher): Update to 2.0.0. Clément Lassieur2017-06-081-2/+3
* gnu: diamond: Update to 0.9.6.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.6. Ben Woodcroft2017-06-081-2/+2
* gnu: guile-2.2: Increase max-silent-time to 6 hours.•••* gnu/packages/guile.scm (guile-2.2)[properties]: Increase max-silent-time to 6 hours. Mark H Weaver2017-06-071-1/+2
* gnu: livemedia-utils: Change source URL to one that is archived.•••* gnu/packages/video.scm (livemedia-utils)[source]: Change it. Clément Lassieur2017-06-081-1/+1
* gnu: Rename 's' to 's-shell'.•••* gnu/packages/shells.scm (s): Rename to ... (s-shell): ... this. [name]: Change to "s-shell". Mark H Weaver2017-06-071-2/+2
* gnu: Add packagekit.•••* gnu/packages/freedesktop.scm (packagekit): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Christopher Baines2017-06-071-0/+41
* gnu: emacs-org: Update to 20170606.•••* gnu/packages/emacs.scm (emacs-org): Update to 20170606. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Nicolas Goaziou2017-06-071-2/+2
* gnu: livemedia-utils: Update to 2017.06.04.•••* gnu/packages/video.scm (livemedia-utils): Update to 2017.06.04. Clément Lassieur2017-06-071-2/+2
* gnu: perl: Fix CVE-2017-6512 in File::Path.•••* gnu/packages/perl.scm (perl)[replacement]: New field. (perl/fixed): New variable. * gnu/packages/patches/perl-file-path-CVE-2017-6512.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Leo Famulari2017-06-062-0/+186
* gnu: perl-file-path: Update to 2.13.•••This fixes CVE-2017-6512. * gnu/packages/perl.scm (perl-file-path): Update to 2.13. Leo Famulari2017-06-061-3/+3
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