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* gnu: r-ape: Update to 5.4.•••* gnu/packages/cran.scm (r-ape): Update to 5.4. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-haven: Update to 2.3.1.•••* gnu/packages/cran.scm (r-haven): Update to 2.3.1. [native-inputs]: Add r-knitr. [propagated-inputs]: Add r-vctrs. Ricardo Wurmus2020-06-111-3/+6
* gnu: r-d3r: Update to 0.9.0.•••* gnu/packages/cran.scm (r-d3r): Update to 0.9.0. [propagated-inputs]: Add r-rlang. Ricardo Wurmus2020-06-111-2/+3
* gnu: r-servr: Update to 0.17.•••* gnu/packages/cran.scm (r-servr): Update to 0.17. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-httpuv: Update to 1.5.4.•••* gnu/packages/cran.scm (r-httpuv): Update to 1.5.4. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-modelr: Update to 0.1.8.•••* gnu/packages/cran.scm (r-modelr): Update to 0.1.8. [propagated-inputs]: Remove r-dplyr; add r-vctrs. Ricardo Wurmus2020-06-111-4/+4
* gnu: r-ellipsis: Update to 0.3.1.•••* gnu/packages/cran.scm (r-ellipsis): Update to 0.3.1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-ggpmisc: Update to 0.3.5.•••* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.5. [propagated-inputs]: Add r-magrittr, r-rlang, r-scales, and r-stringr. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+8
* gnu: r-lubridate: Update to 1.7.9.•••* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.9. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-sn: Update to 1.6-2.•••* gnu/packages/statistics.scm (r-sn): Update to 1.6-2. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-mnormt: Update to 2.0.0.•••* gnu/packages/statistics.scm (r-mnormt): Update to 2.0.0. [propagated-inputs]: Add r-tmvnsim. Ricardo Wurmus2020-06-111-2/+4
* gnu: Add r-tmvnsim.•••* gnu/packages/statistics.scm (r-tmvnsim): New variable. Ricardo Wurmus2020-06-111-0/+29
* gnu: r-car: Update to 3.0-8.•••* gnu/packages/statistics.scm (r-car): Update to 3.0-8. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-cardata: Update to 3.0-4.•••* gnu/packages/statistics.scm (r-cardata): Update to 3.0-4. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-tidyr: Update to 1.1.0.•••* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-mvtnorm: Update to 1.1-1.•••* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-1. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-glmnet: Update to 4.0.•••* gnu/packages/statistics.scm (r-glmnet): Update to 4.0. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-3/+4
* gnu: r-rmarkdown: Update to 2.2.•••* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.2. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+4
* gnu: r-rcpparmadillo: Update to 0.9.900.1.0.•••* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.1.0. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-backports: Update to 1.1.7.•••* gnu/packages/statistics.scm (r-backports): Update to 1.1.7. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-dbplyr: Update to 1.4.4.•••* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.4. [propagated-inputs]: Add r-blob and r-magrittr. Ricardo Wurmus2020-06-111-2/+4
* gnu: r-dplyr: Update to 1.0.0.•••* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.0. [propagated-inputs]: Remove r-assertthat, r-bh, r-pkgconfig, r-plogr, and r-rcpp; add r-generics, r-lifecycle, and r-vctrs. Ricardo Wurmus2020-06-111-9/+7
* gnu: r-ggplot2: Update to 3.3.1.•••* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.1. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-06-111-2/+4
* gnu: r-nlme: Update to 3.1-148.•••* gnu/packages/statistics.scm (r-nlme): Update to 3.1-148. Ricardo Wurmus2020-06-111-2/+2
* gnu: r-foreign: Update to 0.8-80.•••* gnu/packages/statistics.scm (r-foreign): Update to 0.8-80. Ricardo Wurmus2020-06-111-2/+2
* gnu: php: Update to 7.4.7.•••* gnu/packages/php.scm (php): Update to 7.4.7. Julien Lepiller2020-06-111-2/+2
* gnu: sameboy: Update to 0.13.2.•••* gnu/packages/emulators.scm (sameboy): Update to 0.13.2. [arguments]: Specify NATIVE_CC to avoid requiring the `cc' program. Jakub Kądziołka2020-06-111-3/+3
* gnu: java-jakarta-oro: Use a mirror URL.•••* gnu/packages/java.scm (java-jakarta-oro)[source]: Download using an apache mirror:// URL. Efraim Flashner2020-06-111-1/+1
* gnu: java-commons-httpclient: Use a mirror URL.•••* gnu/packages/java.scm (java-commons-httpclient)[source]: Use an apache mirror:// URL. Efraim Flashner2020-06-111-1/+1
* gnu: ant-bootstrap: Use a mirror URL.•••* gnu/packages/java.scm (ant-bootstrap)[source]: Use an apache mirror:// URL. Efraim Flashner2020-06-111-1/+1
* gnu: maven-artifact: Use a mirror URL.•••* gnu/packages/maven.scm (maven-artifact)[source]: Use an apache mirror:// URL. Efraim Flashner2020-06-111-1/+1
* gnu: maven-wagon-provider-api: Use a mirror URL.•••* gnu/packages/maven.scm (maven-wagon-provider-api)[source]: Use an apache mirror:// URL. Efraim Flashner2020-06-111-1/+1
* gnu: maven-plugin-annotations: Use a mirror URL.•••* gnu/packages/maven.scm (maven-plugin-annotations)[source]: Use an apache mirror:// URL. Efraim Flashner2020-06-111-1/+1
* gnu: maven-shared-utils: Use a mirror URL.•••* gnu/packages/maven.scm (maven-shared-utils)[source]: Use an apache mirror:// URL. Efraim Flashner2020-06-111-1/+2
* gnu: serf: Use a mirror URL.•••* gnu/packages/web.scm (serf)[source]: Use an apache mirror:// URL. Efraim Flashner2020-06-111-1/+1
* gnu: subversion: Use a mirror URL.•••* gnu/packages/version-control.scm (subversion)[source]: Use an apache mirror:// URL. Efraim Flashner2020-06-111-7/+3
* gnu: lyx: Use qt-build-system.•••* gnu/packages/tex.scm (lyx)[build-system]: Switch to qt-build-system. [arguments]: Remove imported modules. Remove custom 'wrap-qt phase. Efraim Flashner2020-06-111-11/+2
* gnu: lyx: Don't install to custom directory.•••* gnu/packages/tex.scm (lyx)[arguments]: Adjust configure-flags to not add the version to the binary's suffix. Remove custom 'patch-desktop-file, 'setenv-check and 'install-symlink phases. Efraim Flashner2020-06-111-33/+4
* gnu: lyx: Update to 2.3.5.1.•••* gnu/packages/tex.scm (lyx): Update to 2.3.5.1. [arguments]: Remove 'fix-compilation-with-boost-1.69 phase. In 'patch-python phase patch more files, substitute with python3. Split 'setenv-check and create empty file after 'unpack. Efraim Flashner2020-06-111-15/+14
* gnu: lyx: Wrap binary.••• Fixes <https://bugs.gnu.org/37147>. * gnu/packages/tex.scm (lyx)[arguments]: Import qt-utils. Add phase to wrap the lyx2.3 binary. Efraim Flashner2020-06-111-1/+14
* gnu: fet: Update to 5.45.0.•••* gnu/packages/education.scm (fet): Update to 5.45.0. Nicolas Goaziou2020-06-101-2/+2
* gnu: scintilla: Update to 4.4.3.•••* gnu/packages/text-editors.scm (scintilla): Update to 4.4.3. Nicolas Goaziou2020-06-101-2/+2
* gnu: thinkfan: Update to 1.2.•••* gnu/packages/linux.scm (thinkfan): Update to 1.2. [home-page]: Switch to an up-to-date home page. Nicolas Goaziou2020-06-101-3/+3
* gnu: progress: Update to 0.15.•••* gnu/packages/admin.scm (progress): Update to 0.15. Tobias Geerinckx-Rice2020-06-101-2/+2
* gnu: man-pages: Update to 5.07.•••* gnu/packages/man.scm (man-pages): Update to 5.07. Tobias Geerinckx-Rice2020-06-101-2/+2
* gnu: ipopt: Fix source URI.•••* gnu/packages/maths.scm (ipopt)[source]: Fix URI. Nicolas Goaziou2020-06-101-1/+1
* gnu: grfcodec: Fix source URL.•••* gnu/packages/game-development.scm (grfcodec)[source]: Use HTTPS for URL. Re-indent package. Nicolas Goaziou2020-06-101-30/+30
* gnu: cuirass: Update to 0.0.1-2280ae18.•••* gnu/packages/ci.scm (cuirass): Update to 0.0.1-2280ae18. Mathieu Othacehe2020-06-101-4/+4
* gnu: ipopt: Use HTTPS home page URI.•••* gnu/packages/maths.scm (ipopt)[home-page]: Use HTTPS URI. Nicolas Goaziou2020-06-101-1/+1
* gnu: grfcodec: Use HTTPS home page URI.•••* gnu/packages/game-development.scm (grfcodec)[home-page]: Use HTTPS URI. Nicolas Goaziou2020-06-101-1/+1
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