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* gnu: Add python-phylophlan.•••* gnu/packages/bioinformatics.scm (python-phylophlan): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>. Mădălin Ionel Patrașcu2023-01-251-0/+37
* gnu: Add python-hclust2.•••* gnu/packages/bioinformatics.scm (python-hclust2): New variable. Mădălin Ionel Patrașcu2023-01-251-0/+24
* gnu: Add python-cmseq.•••* gnu/packages/bioinformatics.scm (python-cmseq): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>. Mădălin Ionel Patrașcu2023-01-251-1/+37
* gnu: Add python-bcbio-gff/biopython-1.73.•••* gnu/packages/bioinformatics.scm (python-bcbio-gff/biopython-1.73): New variable. Ricardo Wurmus2023-01-251-1/+8
* gnu: Add emacs-malyon.•••* gnu/packages/emacs-xyz.scm (emacs-malyon): New variable. Ricardo Wurmus2023-01-251-1/+23
* gnu: Add synthpod.•••* gnu/packages/music.scm (synthpod): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Sughosha2023-01-251-1/+67
* gnu: rpm: Update to 4.18.0.•••* gnu/packages/package-management.scm (rpm): Update to 4.18.0. [arguments]: Improve robustness of fix-lua-check phase. Delete obsolete set-nss-library-path phase. [inputs]: Remove bdb, cpio, nspr, and nss. Move python to... [native-inputs]: ... here. Maxim Cournoyer2023-01-241-20/+9
* gnu: flint: Add 'release-monitoring-url' property.•••* gnu/packages/algebra.scm (flint)[properties]: New field. Ludovic Courtès2023-01-231-1/+3
* gnu: universal-ctags: Update to 6.0.20230122.0.•••* gnu/packages/code.scm (universal-ctags): Update to 6.0.20230122.0. Maxim Cournoyer2023-01-231-2/+2
* gnu: woof: Update to 20220202.•••* gnu/packages/web.scm (woof): Update to 20220202. [source]: Change to Github. [arguments]: Update source path, change to python3, remove chmod. [inputs]: Change to python3. Clément Lassieur2023-01-231-11/+11
* gnu: Add dwarfs.•••* gnu/packages/file-systems.scm (dwarfs): New variable. Pierre Neidhardt2023-01-231-0/+99
* gnu: Add libdwarf.•••* gnu/packages/elf.scm (libdwarf): New variable. Pierre Neidhardt2023-01-231-1/+30
* gnu: dezyne: Update to 2.17.0.•••* gnu/packages/dezyne.scm (dezyne): Update to 2.17.0. Jan (janneke) Nieuwenhuizen2023-01-231-3/+3
* gnu: diffoscope: Simplify the build-man-page phase.•••* gnu/packages/diffoscope.scm (diffoscope) [phases]: Remove MAKE-FLAGS binding in the build-man-page phase, as the python-build-system has no such argument. Maxim Cournoyer2023-01-221-2/+2
* gnu: diffoscope: Fix indentation.•••* gnu/packages/diffoscope.scm (diffoscope): Fix indentation. Maxim Cournoyer2023-01-221-75/+75
* gnu: diffoscope: Update to 233.•••* gnu/packages/diffoscope.scm (diffoscope): Update to 233. [native-inputs]: Add lzip and python-pypdf, drop python-pypdf2. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Vagrant Cascadian2023-01-221-3/+4
* gnu: Add python-pypdf.•••* gnu/packages/pdf.scm (python-pypdf): New variable. * gnu/packages/patches/python-pypdf-annotate-tests-appropriately.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Vagrant Cascadian2023-01-222-0/+125
* gnu: volctl: Update to 0.9.3.•••Fixes <https://issues.guix.gnu.org/58120>. * gnu/packages/gtk.scm (volctl): Update to 0.9.3. [arguments]: Update substitutions in patch-path phase and delete trailing #t. [inputs]: Delete pulseaudio. Move gtk+ to... [propagated-inputs] ... here. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sergiu Ivanov2023-01-221-13/+15
* gnu: Add python-pulsectl.•••* gnu/packages/audio.scm (python-pulsectl): New variable. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sergiu Ivanov2023-01-221-0/+33
* gnu: volctl: Make the synopsis line shorter.•••* gnu/packages/gtk.scm (volctl): Make the synopsis line shorter. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sergiu Ivanov2023-01-221-1/+1
* gnu: libarchive: Mention bsdcat, bsdcpio and bsdtar in description.•••* gnu/packages/backup.scm (libarchive)[description]: Mention the bsdcat, bsdcpio and bsdtar commands. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Simon Tournier2023-01-221-1/+2
* gnu: hpcguix-web: Update to 0.3.0.•••* gnu/packages/web.scm (hpcguix-web): Update to 0.3.0. [inputs]: Add GUILE-SYNTAX-HIGHLIGHT. [arguments]: In 'wrap-program' phase, take guile-syntax-highlight into account. * gnu/tests/web.scm (%hpcguix-web-specs): Remove 'define'. * doc/guix.texi (Web Services): Adjust accordingly. Ludovic Courtès2023-01-221-4/+7
* gnu: pari-gp: Update to 2.15.2.•••* gnu/packages/algebra.scm (pari-gp): Update to 2.15.2. Andreas Enge2023-01-221-2/+2
* gnu: libxmlb: Update to 0.3.10.•••* gnu/packages/xml.scm (libxmlb): Update to 0.3.10. Tobias Geerinckx-Rice2023-01-151-2/+2
* gnu: libucl: Update to 0.8.2.•••* gnu/packages/wm.scm (libucl): Update to 0.8.2. Tobias Geerinckx-Rice2023-01-151-3/+2
* gnu: memcached: Update to 1.6.18.•••* gnu/packages/databases.scm (memcached): Update to 1.6.18. Tobias Geerinckx-Rice2023-01-151-2/+2
* gnu: klavaro: Update to 3.14.•••* gnu/packages/education.scm (klavaro): Update to 3.14. Tobias Geerinckx-Rice2023-01-151-2/+2
* gnu: gvfs: Update to 1.50.3.•••* gnu/packages/gnome.scm (gvfs): Update to 1.50.3. Tobias Geerinckx-Rice2023-01-151-2/+2
* gnu: barrage: Update to 1.0.6.•••* gnu/packages/games.scm (barrage): Update to 1.0.6. Tobias Geerinckx-Rice2023-01-151-2/+2
* gnu: gnome-latex: Update to 3.44.0.•••* gnu/packages/gnome.scm (gnome-latex): Update to 3.44.0. Liliana Marie Prikler2023-01-221-2/+2
* gnu: devhelp: Update to 43.0.•••* gnu/packages/gnome.scm (devhelp): Update to 43.0. [arguments]: Update ‘skip-gtk-update-icon-cache’ accordingly. Liliana Marie Prikler2023-01-221-4/+5
* gnu: gedit: Update to 44.1.•••* gnu/packages/gnome.scm (gedit): Update to 44.1. [native-inputs]: Add gtk-doc. [inputs]: Add amtk and tepl. Liliana Marie Prikler2023-01-221-3/+6
* gnu: amtk: Update to 5.6.1.•••* gnu/packages/gnome.scm (amtk): Update to 5.6.1. Liliana Marie Prikler2023-01-221-2/+2
* gnu: tepl: Update to 6.4.0.•••* gnu/packages/gnome.scm (tepl): Update to 6.4.0. Liliana Marie Prikler2023-01-221-2/+2
* gnu: lighttpd: Update to 1.4.68.•••* gnu/packages/web.scm (lighttpd): Update to 1.4.68. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> André Batista2023-01-221-2/+2
* gnu: gnome-shell-extension-radio: Update to 20.•••* gnu/packages/gnome-xyz.scm (gnome-shell-extension-radio): Update to 20. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Sughosha2023-01-221-2/+2
* gnu: Add libxapp.•••* gnu/packages/cinnamon.scm (libxapp): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Wamm K. D2023-01-221-0/+81
* gnu: emacs-minimal: Do not patch compilation driver.•••The ‘patch-compilation-driver’ phase pulls in libgccjit even though it has been deliberately removed from emacs-minimal. * gnu/packages/emacs.scm (emacs)[#:phases]: Delete ‘patch-compilation-driver’. Liliana Marie Prikler2023-01-221-0/+1
* gnu: emacs-company-box: Remove unclearly licensed icons from source.•••emacs-company-box bundles icons with unclear licenses. Confer <https://github.com/emacs-lsp/lsp-treemacs/issues/123>. * gnu/packages/emacs-xyz.scm (%emacs-company-box-upstream-source): New variable. (emacs-company-box)[source]: Use a computed origin to remove unclearly licensed icons. Also remove source code which mentions said icons. Liliana Marie Prikler2023-01-221-7/+77
* gnu: emacs-lsp-treemacs: Remove unclearly licensed icons.•••emacs-lsp-treemacs bundles icons with unclear licenses. See also <https://github.com/emacs-lsp/lsp-treemacs/issues/123>. * gnu/packages/emacs-xyz.scm (%emacs-lsp-treemacs-upstream-source): New variable. (emacs-treemacs)[source]: Use a computed origin to remove unclearly licensed icons. Also remove source code which mentions said icons. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> r0man2023-01-221-7/+65
* gnu: Add perl-memory-usage.•••* gnu/packages/perl.scm (perl-memory-usage): New variable. Mădălin Ionel Patrașcu2023-01-221-0/+25
* gnu: Add r-anvil.•••* gnu/packages/bioconductor.scm (r-anvil): New variable. Mădălin Ionel Patrașcu2023-01-221-0/+41
* gnu: Add r-rapiclient.•••* gnu/packages/cran.scm (r-rapiclient): New variable. Mădălin Ionel Patrașcu2023-01-221-0/+22
* gnu: r-speaq: Fix description.•••* gnu/packages/bioconductor.scm (r-speaq)[description]: Reword. Ricardo Wurmus2023-01-221-8/+8
* gnu: Add r-alpsnmr.•••* gnu/packages/bioconductor.scm (r-alpsnmr): New variable. Mădălin Ionel Patrașcu2023-01-221-0/+53
* gnu: Add r-speaq.•••* gnu/packages/bioconductor.scm (r-speaq): New variable. Mădălin Ionel Patrașcu2023-01-221-1/+41
* gnu: Add r-missforest.•••* gnu/packages/cran.scm (r-missforest): New variable. Mădălin Ionel Patrașcu2023-01-221-0/+30
* gnu: Add r-baseline.•••* gnu/packages/cran.scm (r-baseline): New variable. Mădălin Ionel Patrașcu2023-01-221-1/+29
* gnu: Add r-gwidgets2tcltk.•••* gnu/packages/cran.scm (r-gwidgets2tcltk): New variable. Ricardo Wurmus2023-01-221-0/+30
* gnu: Add r-gwidgets2.•••* gnu/packages/cran.scm (r-gwidgets2): New variable. Ricardo Wurmus2023-01-221-0/+21
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