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* gnu: Add r-htqpcr.•••* gnu/packages/bioconductor.scm (r-htqpcr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> zimoun2019-10-151-0/+34
* gnu: openmpi: Add dependency on UCX when supported.•••* gnu/packages/mpi.scm (openmpi)[inputs]: Add UCX conditionally. Ludovic Courtès2019-10-151-0/+4
* gnu: Add ucx.•••* gnu/packages/fabric-management.scm (ucx): New variable. Ludovic Courtès2019-10-151-0/+50
* gnu: guix: Update to 88da011.•••* gnu/packages/package-management.scm (guix): Update to 88da011. Ludovic Courtès2019-10-151-3/+3
* gnu: emacs-magit: Add patch for compatibility with emacs-forge.•••* gnu/local.mk (emacs-magit-format-author-margin.patch): Add patch. * gnu/packages/emacs-xyz.scm: Add. * gnu/packages/patches/emacs-magit-log-format-author-margin.patch: Add. Brian Leung2019-10-142-0/+77
* gnu: emacs-prescient: Update to 3.3-1.9505658.•••* gnu/packages/emacs-xyz.scm (emacs-prescient): Update to 3.3-1.9505658. Brian Leung2019-10-141-21/+25
* gnu: emacs-ghub: Update to 3.2.0-2.e19cd86.•••* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.2.0-2.e19cd86. [propagated-inputs]: Add emacs-let-alist. Brian Leung2019-10-141-3/+4
* gnu: emacs-markdown-preview: Fix synopsis.•••* gnu/packages/emacs-xyz.scm (emacs-markdown-preview): Fix synopsis. Brian Leung2019-10-141-1/+1
* gnu: clamav: Update to 0.102.0.•••* gnu/packages/antivirus.scm (clamav): Update to 0.102.0. Eric Bavier2019-10-141-3/+3
* gnu: xfsprogs: Install Python script to :python output.•••* gnu/packages/linux.scm (xfsprogs)[outputs]: Add ‘python’. [arguments]: Move ‘xfs_scrub_all’ to :python. [inputs]: Add python-wrapper to make it actually run. Tobias Geerinckx-Rice2019-10-151-5/+20
* gnu: xfsprogs: Update to 5.2.1.•••* gnu/packages/linux.scm (xfsprogs): Update to 5.2.1. Tobias Geerinckx-Rice2019-10-151-2/+2
* gnu: quaternion: Wrap with extra inputs.•••* gnu/packages/messaging.scm (quaternion)[inputs]: Add qtquickcontrols2. [arguments]: Use WRAP-QT-PROGRAM. Tobias Geerinckx-Rice2019-10-151-12/+10
* gnu: zenity: Don't use NAME in source URI.•••* gnu/packages/gnome.scm (zenity)[source]: Hard-code NAME. Tobias Geerinckx-Rice2019-10-151-2/+2
* gnu: zenity: Update to 3.32.0.•••* gnu/packages/gnome.scm (zenity): Update to 3.32.0. Tobias Geerinckx-Rice2019-10-151-2/+2
* gnu: r-cmprsk: Update to 2.2-9.•••* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-9. Tobias Geerinckx-Rice2019-10-151-3/+2
* gnu: r-pkgbuild: Update to 1.0.6.•••* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.6. Tobias Geerinckx-Rice2019-10-151-3/+2
* gnu: python-git-review: Update to 1.28.0.•••* gnu/packages/openstack.scm (python-git-review): Update to 1.28.0. Tobias Geerinckx-Rice2019-10-151-5/+4
* gnu: python-django-override-storage: Update to 0.1.6.•••* gnu/packages/django.scm (python-django-override-storage): Update to 0.1.6. Tobias Geerinckx-Rice2019-10-151-3/+2
* gnu: python-crate: Update to 0.23.2.•••* gnu/packages/databases.scm (python-crate): Update to 0.23.2. Tobias Geerinckx-Rice2019-10-151-2/+2
* gnu: pioneer: Update to 20190203.•••* gnu/packages/games.scm (pioneer): Update to 20190203. [build-system]: Switch from gnu- to cmake-build-system. [native-inputs]: Remove autoconf and automake. [inputs]: Add glew. [arguments]: Adjust configure-flags for cmake. Remove phase modification. Eric Bavier2019-10-141-17/+9
* gnu: Add emacs-git-link.•••* gnu/packages/emacs-xyz.scm (emacs-git-link): New variable. Brian Leung2019-10-141-0/+25
* gnu: Add emacs-apheleia.•••* gnu/packages/emacs-xyz.scm (emacs-apheleia): New variable. Brian Leung2019-10-141-0/+22
* gnu: Add emacs-git-gutter-fringe.•••* gnu/packages/emacs-xyz.scm (emacs-git-gutter-fringe): New variable. Brian Leung2019-10-141-0/+26
* gnu: Add emacs-fringe-helper.•••* gnu/packages/emacs-xyz.scm (emacs-fringe-helper): New variable. Brian Leung2019-10-141-0/+28
* gnu: Add methyldackel.•••* gnu/packages/bioinformatics.scm (methyldackel): New variable. Ricardo Wurmus2019-10-141-0/+44
* gnu: vim-fugitive: Update to 3.1.•••* gnu/packages/vim.scm (vim-fugitive): Update to 3.1. Efraim Flashner2019-10-141-2/+2
* gnu: ddcutil: Update to 0.9.7.•••* gnu/packages/hardware.scm (ddcutil): Update to 0.9.7. Tobias Geerinckx-Rice2019-10-141-2/+2
* gnu: python-py3status: Update to 3.21.•••* gnu/packages/python-xyz.scm (python-py3status): Update to 3.21. Tobias Geerinckx-Rice2019-10-141-3/+2
* gnu: python-colorspacious: Update to 1.1.2.•••* gnu/packages/python-xyz.scm (python-colorspacious): Update to 1.1.2. Tobias Geerinckx-Rice2019-10-141-2/+2
* gnu: python-glob2: Update to 0.7.•••* gnu/packages/python-xyz.scm (python-glob2): Update to 0.7. Tobias Geerinckx-Rice2019-10-141-3/+3
* gnu: sqitch: Remove perl-file-homedir input.•••* gnu/packages/databases.scm (perl-file-homedir)[inputs]: Remove perl-file-homedir. Tobias Geerinckx-Rice2019-10-141-1/+0
* gnu: Add enlightenment-wayland.•••* gnu/packages/enlightenment.scm (enlightenment-wayland): New variable. Efraim Flashner2019-10-141-0/+14
* gnu: gtkmm: Update to 3.24.1.•••* gnu/packages/gtk.scm (gtkmm): Update to 3.24.1. Ludovic Courtès2019-10-141-2/+2
* gnu: gspell: Update to 1.8.2.•••* gnu/packages/gnome.scm (gspell): Update to 1.8.2. Ludovic Courtès2019-10-141-2/+2
* gnu: gfortran: Add version 9.x.•••* gnu/packages/gcc.scm (gfortran-9): New variable. Ludovic Courtès2019-10-141-0/+4
* gnu: mumps: Build and install shared libraries.•••* gnu/packages/patches/mumps-shared-libseq.patch, gnu/packages/patches/mumps-shared-mumps.patch, gnu/packages/patches/mumps-shared-pord.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (mumps)[source](patches): Add them. [arguments]: In 'configure' phase, adjust "Makefile.inc" for shared library support. In 'install' phase, install libmpiseq.so when it exists. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr> Maurice Brémond2019-10-144-8/+197
* gnu: mumps: Update to 5.2.1.•••* gnu/packages/maths.scm (mumps): Update to 5.2.1. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr> Maurice Brémond2019-10-141-2/+2
* gnu: Add r-velocyto.•••* gnu/packages/bioinformatics.scm (r-velocyto): New variable. Ricardo Wurmus2019-10-141-0/+44
* gnu: Add r-phastcons100way-ucsc-hg19.•••* gnu/packages/bioconductor.scm (r-phastcons100way-ucsc-hg19): New variable. Ricardo Wurmus2019-10-141-0/+30
* gnu: Add emacs-sly-package-inferred.•••* gnu/packages/emacs-xyz.scm (emacs-sly-package-inferred): New variable. Pierre Neidhardt2019-10-141-0/+33
* gnu: Add emacs-sly-macrostep.•••* gnu/packages/emacs-xyz.scm (emacs-sly-macrostep): New variable. Pierre Neidhardt2019-10-141-0/+33
* gnu: Add emacs-sly-named-readtables.•••* gnu/packages/emacs-xyz.scm (emacs-sly-named-readtables): New variable. Pierre Neidhardt2019-10-141-0/+29
* gnu: emacs-sly-asdf: Update to 20191013.•••* gnu/packages/emacs-xyz.scm (emacs-sly-asdf): Update to 20191013. Pierre Neidhardt2019-10-141-13/+4
* gnu: Add emacs-dimmer.••• * gnu/packages/emacs-xyz.scm (emacs-dimmer): New variable. Stephen Webber2019-10-141-0/+24
* gnu: sudo: Update to 1.8.28 [fixes CVE-2019-14287].•••* gnu/packages/admin.scm (sudo): Update to 1.8.28. Tobias Geerinckx-Rice2019-10-141-2/+2
* gnu: r-fields: Use HTTPS home-page.•••* gnu/packages/cran.scm (r-fields)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2019-10-141-1/+1
* gnu: r-fields: Update to 9.9.•••* gnu/packages/cran.scm (r-fields): Update to 9.9. Tobias Geerinckx-Rice2019-10-141-3/+2
* gnu: sqitch: Update to 1.0.0.•••* gnu/packages/databases.scm (sqitch): Update to 1.0.0. Tobias Geerinckx-Rice2019-10-141-6/+4
* gnu: network-manager-applet: Update to 1.8.24.•••* gnu/packages/gnome.scm (network-manager-applet): Update to 1.8.24. Tobias Geerinckx-Rice2019-10-141-2/+2
* gnu: poedit: Update to 2.2.4.•••* gnu/packages/poedit.scm (poedit): Update to 2.2.4. Tobias Geerinckx-Rice2019-10-141-2/+3
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