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* gnu: Add r-bit64.•••* gnu/packages/statistics.scm (r-bit64): New variable. Ben Woodcroft2016-12-141-0/+26
* gnu: Add r-bit.•••* gnu/packages/statistics.scm (r-bit): New variable. Ben Woodcroft2016-12-141-0/+21
* Merge branch 'master' into python-build-systemHartmut Goebel2016-11-291-0/+340
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| * gnu: Add r-rocr.•••* gnu/packages/statistics.scm (r-rocr): New variable. Ricardo Wurmus2016-11-281-0/+30
| * gnu: Add r-gplots.•••* gnu/packages/statistics.scm (r-gplots): New variable. Ricardo Wurmus2016-11-281-0/+40
| * gnu: Add r-gdata.•••* gnu/packages/statistics.scm (r-gdata): New variable. Ricardo Wurmus2016-11-281-0/+40
| * gnu: Add r-gtools.•••* gnu/packages/statistics.scm (r-gtools): New variable. Ricardo Wurmus2016-11-281-0/+22
| * gnu: Add r-sfsmisc.•••* gnu/packages/statistics.scm (r-sfsmisc): New variable. Ricardo Wurmus2016-11-281-0/+19
| * gnu: Add r-fastcluster.•••* gnu/packages/statistics.scm (r-fastcluster): New variable. Ricardo Wurmus2016-11-281-0/+25
| * gnu: Add r-preprocesscore.•••* gnu/packages/statistics.scm (r-preprocesscore): New variable. Ricardo Wurmus2016-11-281-0/+21
| * gnu: Add r-dynamictreecut.•••* gnu/packages/statistics.scm (r-dynamictreecut): New variable. Ricardo Wurmus2016-11-281-0/+21
| * gnu: Add r-spams.•••* gnu/packages/statistics.scm (r-spams): New variable. Ricardo Wurmus2016-11-281-0/+52
| * gnu: Add r-googlesheets.•••* gnu/packages/statistics.scm (r-googlesheets): New variable. Ricardo Wurmus2016-11-281-0/+28
| * gnu: Add r-cellranger.•••* gnu/packages/statistics.scm (r-cellranger): New variable. Ricardo Wurmus2016-11-281-0/+22
| * gnu: Add r-rematch.•••* gnu/packages/statistics.scm (r-rematch): New variable. Ricardo Wurmus2016-11-281-0/+20
* | gnu: python-statsmodels: Fix build•••* gnu/packages/statistics.scm (python-statsmodels): [check] set PYTHONPATH prior to running tests. Hartmut Goebel2016-11-151-5/+7
* | gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).•••Bug 20765 is solved since we build all Python packages using option "--single-version-externally-managed". * gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove configure-flags. (pepr): remove phase "disable-egg-generation". * gnu/packages/pdf.scm (reportlab): Remove configure-flags. * gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl, python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove configure-flags. (python-pillow) remove phase "disable-egg-generation". (python-libarchive-c) Remove patching setup.cfg. * gnu/packages/statistics.scm (python-patsy): remove phase "prevent-generation-of-egg-archive". * gnu/packages/tls.scm (python-acme): remove phase "disable-egg-compression". * gnu/packages/tor.scm (onionshare): Remove configure-flags. Hartmut Goebel2016-11-151-7/+1
* | gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)•••This patch contains the changes for all modules beside python.scm where setuptools are used in an inherited package and removing this input also removes the need for inheriting the package. This is the case if adding setuptools in the inherited package was the only change. Change this to not inherit and remove the new needless call to "strip-python2-variant (if applicable). * gnu/packages/bioinformatics.scm (python-biopython, python2-biopython, python-twobitreader, python2-twobitreader, python-plastid, python2-plastid, python2-pybigwig, python2-screed, sra-tools): No longer "inherit" Python 2 packages inheriting from a Python 3 package if the sole reason for inheriting was adding python-setuptools respective python2-setuptools to [inputs], [native-inputs] or [propagated-inputs]. Remove now needless [properties] "python2-variant" where applicable. * gnu/packages/django.scm (python-pytest-django, python2-pytest-django, python-django-filter, python2-django-filter): Likewise. * gnu/packages/gnupg.scm (python2-pygpgme): Likewise. * gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient): Likewise. * gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise. * gnu/packages/music.scm (python-pylast, python2-pylast): Likewise. * gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock, python2-git-review): Likewise. * gnu/packages/password-utils.scm (python2-bcrypt): Likewise. * gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise. * gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise. * gnu/packages/web.scm (python2-feedparser): Likewise. Hartmut Goebel2016-11-151-7/+2
* | gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)•••This patch contains the changes where setuptools are used in an inherited package and removing this input keeps the need for inheriting the package. * gnu/packages/bioinformatics.scm (python2-biom-format): Remove python-setuptools respective python2-setuptools from [inputs], [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from a Python 3 package. * gnu/packages/python.scm (python2-pytest-mock, python2-oauthlib, python2-seaborn, python2-tornado, python2-terminado, python2-rauth, python2-anyjson, python2-amqp, python2-kombu, python2-billiard, python2-celery, python2-jellyfish, python2-binaryornot, python2-natsort, python2-graphene): Likewise. * gnu/packages/statistics.scm (python2-statsmodels): Likewise. Hartmut Goebel2016-11-151-4/+1
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* Merge branch 'core-updates'Ludovic Courtès2016-11-131-1/+3
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| * Merge branch 'master' into core-updatesMark H Weaver2016-11-071-1/+1
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| * \ Merge branch 'master' into core-updatesMark H Weaver2016-11-061-14/+113
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| * \ \ Merge branch 'master' into core-updatesMark H Weaver2016-10-271-0/+8
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| * \ \ \ Merge branch 'master' into core-updatesLeo Famulari2016-10-261-34/+60
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| * \ \ \ \ Merge branch 'master' into core-updatesMark H Weaver2016-10-121-2/+2
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| * \ \ \ \ \ Merge branch 'master' into core-updatesLeo Famulari2016-10-031-4/+57
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| * \ \ \ \ \ \ Merge branch 'master' into core-updatesLudovic Courtès2016-09-301-67/+440
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| * | | | | | | | gnu: Add and use gettext-minimal.•••* gnu/packages/gettext.scm (gnu-gettext): Rename to... (gettext-minimal): ... this. Adjust synopsis and description. (gnu-gettext): Inherit from it. (po4a): Use 'gettext-minimal' instead of 'gnu-gettext'. * gnu/packages/acl.scm: Likewise. * gnu/packages/admin.scm: Likewise. * gnu/packages/apl.scm: Likewise. * gnu/packages/attr.scm: Likewise. * gnu/packages/audio.scm: Likewise. * gnu/packages/base.scm: Likewise. * gnu/packages/cdrom.scm: Likewise. * gnu/packages/commencement.scm: Likewise. * gnu/packages/crypto.scm: Likewise. * gnu/packages/databases.scm: Likewise. * gnu/packages/disk.scm: Likewise. * gnu/packages/documentation.scm: Likewise. * gnu/packages/education.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/enlightenment.scm: Likewise. * gnu/packages/fcitx.scm: Likewise. * gnu/packages/fontutils.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gkrellm.scm: Likewise. * gnu/packages/glib.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/grub.scm: Likewise. * gnu/packages/gtk.scm: Likewise. * gnu/packages/guile.scm: Likewise. * gnu/packages/ibus.scm: Likewise. * gnu/packages/irc.scm: Likewise. * gnu/packages/iso-codes.scm: Likewise. * gnu/packages/kde-frameworks.scm: Likewise. * gnu/packages/kodi.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/man.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/mono.scm: Likewise. * gnu/packages/mp3.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/nano.scm: Likewise. * gnu/packages/networking.scm: Likewise. * gnu/packages/package-management.scm: Likewise. * gnu/packages/pdf.scm: Likewise. * gnu/packages/sawfish.scm: Likewise. * gnu/packages/statistics.scm: Likewise. * gnu/packages/terminals.scm: Likewise. * gnu/packages/version-control.scm: Likewise. * gnu/packages/vpn.scm: Likewise. * gnu/packages/w3m.scm: Likewise. * gnu/packages/webkit.scm: Likewise. * gnu/packages/wicd.scm: Likewise. * gnu/packages/wine.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/packages/xorg.scm: Likewise. Alex Kost2016-09-281-1/+1
| * | | | | | | | gnu: r: Update to 3.3.1.•••* gnu/packages/statistics.scm (r): Update to 3.3.1. Ben J Woodcroft2016-09-091-2/+2
| * | | | | | | | gnu: r: Add openblas input.•••* gnu/packages/statistics.scm (r)[inputs]: Add openblas. [arguments]: Adapt configure flags. Ben J Woodcroft2016-09-091-0/+2
* | | | | | | | | gnu: r-rmarkdown: Remove phase "copy-files-without-mode".•••This phase is no longer needed as upstream has merged the fix in the current release. * gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build phase "copy-files-without-mode". Ricardo Wurmus2016-11-101-14/+0
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* | | | | | | | gnu: r-proto: Update project's home-page.•••* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> ng02016-11-061-1/+1
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* | | | | | | gnu: r-nmf: Use bigmemory.•••* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add r-bigmemory and r-synchronicity. Roel Janssen2016-11-041-0/+2
* | | | | | | gnu: Add r-bigmemory.•••* gnu/packages/statistics.scm (r-bigmemory): New variable. Roel Janssen2016-11-041-0/+25
* | | | | | | gnu: Add r-synchronicity.•••* gnu/packages/statistics.scm (r-synchronicity): New variable. Roel Janssen2016-11-041-0/+24
* | | | | | | gnu: Add r-bigmemory-sri.•••gnu/packages/statistics.scm (r-bigmemory-sri): New variable. Roel Janssen2016-11-041-0/+20
* | | | | | | gnu: r-hmisc: Update to 4.0.0.•••* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0. [propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis, r-survival. Ricardo Wurmus2016-11-031-2/+8
* | | | | | | gnu: r-r-oo: Update to 1.21.0.•••* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0. Ricardo Wurmus2016-11-031-2/+2
* | | | | | | gnu: r-openssl: Update to 0.9.5.•••* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5. Ricardo Wurmus2016-11-031-2/+2
* | | | | | | gnu: r-checkmate: Update to 1.8.2.•••* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2. Ricardo Wurmus2016-11-031-2/+2
* | | | | | | gnu: r-acepack: Update to 1.4.1.•••* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1. Ricardo Wurmus2016-11-031-2/+2
* | | | | | | gnu: r-gdtools: Update to 0.1.1.•••* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1. [propagated-inputs]: Add r-withr. Ricardo Wurmus2016-11-031-2/+4
* | | | | | | gnu: r-proto: Update to 1.0.0.•••* gnu/packages/statistics.scm (r-proto): Update to 1.0.0. Ricardo Wurmus2016-11-031-2/+2
* | | | | | | gnu: Add r-survival.•••* gnu/packages/statistics.scm (r-survival): New variable. Ricardo Wurmus2016-11-031-0/+20
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* | | | | | gnu: r: Use uname from Guix•••* gnu/packages/statistics.scm (r): Use uname from Guix. Roel Janssen2016-10-271-0/+8
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* | | | | gnu: r: Update to 3.3.1.•••* gnu/packages/statistics.scm (r): Update to 3.3.1. Ricardo Wurmus2016-10-261-2/+2
* | | | | gnu: r-matrixstats: Update to 0.51.0.•••* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0. Ricardo Wurmus2016-10-261-2/+2
* | | | | gnu: r-r-utils: Update to 2.4.0.•••* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0. Ricardo Wurmus2016-10-261-2/+2
* | | | | gnu: r-irlba: Update to 2.1.2.•••* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2. Ricardo Wurmus2016-10-261-2/+2
* | | | | gnu: r-codetools: Update to 0.2-15.•••* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15. Ricardo Wurmus2016-10-261-2/+2