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* gnu: python-pyyaml: Fix build.•••python-cython is required to generate the C source for the libyaml extension, which is required for the `_yaml' module to work. This in turn lets the `sanity-check' phase succeed. * gnu/packages/python-xyz.scm (python-pyyaml)[inputs]: Add python-cython. Julien Lepiller2021-07-101-1/+2
* Merge branch 'master' into core-updates•••Conflicts: gnu/packages/cups.scm gnu/packages/python-web.scm gnu/packages/web.scm guix/build/maven/pom.scm Tobias Geerinckx-Rice2021-06-231-19/+59
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| * gnu: Add python-pykdtree.•••* gnu/packages/python-xyz.scm (python-pykdtree): New variable. Vinicius Monego2021-06-231-0/+22
| * gnu: python-numpy, python-scipy: Remove dependency on lapack.•••The dependency on lapack was unused; the LAPACK interface of OpenBLAS is used instead. The dependency on lapack was added in cba256f8faaa18457fc9b77e8b401f17b89bdd75 (numpy) and 719b01c1575b8599b0dca9f245a9d759032f3168 (scipy). * gnu/packages/python-science.scm (python-scipy)[inputs]: Remove LAPACK. * gnu/packages/python-xyz.scm (python-numpy)[inputs]: Likewise. Ludovic Courtès2021-06-221-3/+2
| * gnu: python-pikepdf: Update to 2.13.0.•••* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.13.0. Nicolas Goaziou2021-06-221-2/+2
| * gnu: python-pika: Update to 1.2.0.•••* gnu/packages/python-xyz.scm (python-pika): Update to 1.2.0. [source]: Change to GIT-FETCH. [arguments]: New field. Override and disable tests. [native-inputs]: Remove PYTHON-PYEV. Add PYTHON-MOCK, PYTHON-NOSE, and PYTHON-GEVENT. (python2-pika): Remove variable. Marius Bakke2021-06-221-8/+28
| * gnu: python-ddt: Update to 1.4.2.•••* gnu/packages/python-xyz.scm (python-ddt): Update to 1.4.2. Ricardo Wurmus2021-06-221-2/+2
| * gnu: python-pyyaml: Update to 5.4.1.•••* gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.4.1. Ricardo Wurmus2021-06-211-2/+2
| * gnu: python-argh: Remove python-tox.•••* gnu/packages/python-xyz.scm (python-argh)[propagated-inputs]: Remove python-tox. Ricardo Wurmus2021-06-211-2/+1
* | Merge branch 'master' into core-updates•••Note: this merge actually changes the 'curl' and 'python-attrs' derivations, as part of solving caf4a7a2770ef4d05a6e18f40d602e51da749ddc and 12964df69a99de6190422c752fef65ef813f3b6b respectively. 4604d43c0e (gnu: gnutls@3.6.16: Fix cross-compilation.) was ignored because it cannot currently be tested. Conflicts: gnu/local.mk gnu/packages/aidc.scm gnu/packages/boost.scm gnu/packages/curl.scm gnu/packages/nettle.scm gnu/packages/networking.scm gnu/packages/python-xyz.scm gnu/packages/tls.scm Marius Bakke2021-06-191-73/+93
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| * gnu: python-miniboa: Update to 1.0.8.•••* gnu/packages/python-xyz.scm (python-miniboa): Update to 1.0.8. Arun Isaac2021-06-181-3/+3
| * gnu: python-pygit2: Update to 1.6.0.•••* gnu/packages/python-xyz.scm (python-pygit2): Update to 1.6.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Xinglu Chen2021-06-151-2/+2
| * gnu: Rename qtbase to qtbase-5.•••This change was automated via the following command: $ git ls-files | xargs sed -i 's/,qtbase)/,qtbase-5)/g' $ git ls-files | xargs sed -i 's/inherit qtbase)/inherit qtbase-5)/g' $ git ls-files | xargs sed -i 's/package-version qtbase)/package-version qtbase-5)/g' $ git checkout etc # to clear some spurious changes This is done so the qtbase package can be upgraded to version 6 in the following commit. Maxim Cournoyer2021-06-141-2/+2
| * gnu: python-pyzmq: Update to 22.1.0.•••* gnu/packages/python-xyz.scm (python-pyzmq): Update to 22.1.0. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego2021-06-081-2/+2
| * gnu: python-pyzmq: Enable tests.•••* gnu/packages/python-xyz.scm (python-pyzmq)[arguments]: Remove #:tests?. Add new 'build-extensions' phase to build Cython extensions before tests. [native-inputs]: Remove python-nose. Add python-cython and python-pytest. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego2021-06-081-4/+8
| * gnu: python-toolz: Update to 0.11.1.•••* gnu/packages/python-xyz.scm (python-toolz): Update to 0.11.1. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego2021-06-081-2/+2
| * gnu: python-toolz: Enable tests.•••* gnu/packages/python-xyz.scm (python-toolz)[arguments]: Remove #:tests?. Override check phase. [native-inputs]: Add python-pytest. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego2021-06-081-3/+11
| * gnu: ptpython: Update to 3.0.17.•••* gnu/packages/python-xyz.scm (ptpython): Update to 3.0.17. [propagated-inputs]: Add python-black. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego2021-06-081-3/+4
| * gnu: python-prompt-toolkit: Update to 3.0.18.•••* gnu/packages/python-xyz.scm (python-prompt-toolkit): Update to 3.0.18. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego2021-06-081-2/+2
| * gnu: python2-partd: Remove package.•••* gnu/packages/python-xyz.scm (python2-partd): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name> zimoun2021-06-081-3/+0
| * gnu: python2-numpy-documentation: Remove package.•••* gnu/packages/python-xyz.scm (python2-numpy-documentation): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name> zimoun2021-06-081-7/+0
| * gnu: python2-hdf4: Remove package.•••* gnu/packages/python-xyz.scm (python2-hdf4): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name> zimoun2021-06-081-3/+0
| * gnu: python2-gridmap: Remove package.•••* gnu/packages/python-xyz.scm (python2-gridmap): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name> zimoun2021-06-081-3/+0
| * gnu: python2-fastimport: Remove package.•••* gnu/packages/python-xyz.scm (python2-fastimport): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name> zimoun2021-06-081-3/+0
| * gnu: python2-bigfloat: Remove package.•••* gnu/packages/python-xyz.scm (python2-bigfloat): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name> zimoun2021-06-081-3/+0
| * gnu: python-mappy: Move to (gnu packages bioinformatics).•••* gnu/packages/python-xyz.scm (python-mappy): Move to ... * gnu/packages/bioinformatics.scm: ... here. Efraim Flashner2021-06-081-22/+0
| * gnu: python-pikepdf: Update to 2.12.2.•••* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.12.2. Nicolas Goaziou2021-06-071-2/+2
| * gnu: Add python-rich.•••* gnu/packages/python-xyz.scm (python-rich): New variable. Ricardo Wurmus2021-06-071-0/+50
| * gnu: python-dataclasses: Update to 0.8.•••* gnu/packages/python-xyz.scm (python-dataclasses): Update to 0.8. Ricardo Wurmus2021-06-071-2/+2
| * gnu: python-attrs: Update to 21.2.0.•••* gnu/packages/python-xyz.scm (python-attrs): Update to 21.2.0. (python-attrs-bootstrap): Keep this at 19.3.0 to avoid mass rebuilds. Ricardo Wurmus2021-06-071-2/+9
| * gnu: python-attrs: Conditionally execute tests.•••* gnu/packages/python-xyz.scm (python-attrs)[arguments]: Wrap "check" phase in conditional expression. Ricardo Wurmus2021-06-071-12/+14
* | gnu: python-magic: Update to 0.4.22.•••* gnu/packages/python-xyz.scm (python-magic): Update to 0.4.22. [source]: Switch to GIT-FETCH. [arguments]: Remove #:tests?. Adjust substitution and override check phase. Remove obsolete phase. [native-inputs]: Add WHICH. Marius Bakke2021-06-131-34/+20
* | gnu: python-attrs: Update to 21.2.0.•••* gnu/packages/python-xyz.scm (python-attrs): Update to 21.2.0. [native-inputs]: Remove PYTHON-SPHINX and PYTHON-ZOPE-INTERFACE. Marius Bakke2021-06-131-5/+3
* | Merge branch 'master' into core-updates••• Conflicts: gnu/local.mk gnu/packages/algebra.scm gnu/packages/bioinformatics.scm gnu/packages/curl.scm gnu/packages/docbook.scm gnu/packages/emacs-xyz.scm gnu/packages/maths.scm gnu/packages/plotutils.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/radio.scm gnu/packages/readline.scm gnu/packages/tls.scm gnu/packages/xml.scm gnu/packages/xorg.scm Marius Bakke2021-06-061-63/+328
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| * gnu: Add python-asn1tools.•••* gnu/packages/python-xyz.scm (python-asn1tools): New variable. Hartmut Goebel2021-06-061-1/+25
| * gnu: Add python-sparse.•••* gnu/packages/python-xyz.scm(python-sparse): New variable. Mădălin Ionel Patrașcu2021-06-061-1/+46
| * gnu: python-pypandoc: Use patched texlive-amsfonts.•••* gnu/packages/python-xyz.scm (python-pypandoc)[native-inputs]: Use texlive-amsfonts/patched. Ricardo Wurmus2021-06-051-1/+1
| * gnu: python-ipython-documentation: Use patched texlive-amsfonts.•••* gnu/packages/python-xyz.scm (python-ipython-documentation)[native-inputs]: Use texlive-amsfonts/patched. Ricardo Wurmus2021-06-051-1/+1
| * gnu: python-matplotlib-documentation: Use patched texlive-amsfonts.•••* gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]: Use texlive-amsfonts/patched. Ricardo Wurmus2021-06-051-1/+1
| * gnu: python-numpy-documentation: Use patched texlive-amsfonts.•••* gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]: Use texlive-amsfonts/patched. Ricardo Wurmus2021-06-051-1/+1
| * gnu: python-anndata: Update to 0.7.6.•••* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.6. Roel Janssen2021-06-041-10/+25
| * gnu: python-pydantic: Update to 1.8.2.•••* gnu/packages/python-xyz.scm (python-pydantic): Update to 1.8.2. [arguments]: Disable some new tests. [native-inputs]: Add PYTHON-PYTEST-MOCK. [propagated-inputs]: Add PYTHON-TYPING-EXTENSIONS. Marius Bakke2021-06-041-8/+23
| * gnu: Add python-sinfo.•••* gnu/packages/python-xyz.scm (python-sinfo): New variable. Roel Janssen2021-06-011-0/+19
| * gnu: Add python-stdlib-list.•••* gnu/packages/python-xyz.scm (python-stdlib-list): New variable. Roel Janssen2021-06-011-0/+20
| * gnu: Add python-easy-ansi.•••* gnu/packages/python-xyz.scm (python-easy-ansi): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Stefan Reichör2021-05-311-0/+24
| * gnu: python-fastjsonschema: Update to 2.15.1.•••* gnu/packages/python-xyz.scm (python-fastjsonschema): Update to 2.15.1. Tobias Geerinckx-Rice2021-05-301-3/+2
| * gnu: python-cookiecutter: Update to 1.7.3.•••* gnu/packages/python-xyz.scm (python-cookiecutter): Update to 1.7.3. Tobias Geerinckx-Rice2021-05-301-3/+2
| * gnu: Add python-cachetools.•••* gnu/packages/python-xyz.scm (python-cachetools): New variable. Roel Janssen2021-05-281-0/+18
| * gnu: Add python-argopt.•••* gnu/packages/python-xyz.scm (python-argopt): New variable. Roel Janssen2021-05-281-0/+25
| * gnu: Add python-helper.•••* gnu/packages/python-xyz.scm (python-helper): New variable. Roel Janssen2021-05-271-0/+23