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* gnu: python-pyvista: Update to 0.35.2.•••* gnu/packages/python-science.scm (python-pyvista): Update to 0.35.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Paul A. Patience2022-08-021-2/+2
* gnu: Add python-geosketch.•••* gnu/packages/python-science.scm (python-geosketch): New variable. Ricardo Wurmus2022-08-021-0/+23
* gnu: Add python-fbpca.•••* gnu/packages/python-science.scm (python-fbpca): New variable. Ricardo Wurmus2022-08-021-0/+20
* gnu: python-pyvista: Update to 0.35.1.•••* gnu/packages/python-science (python-pyvista): Update to 0.35.1. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience2022-07-151-2/+2
* gnu: Add python-opt-einsum.•••* gnu/packages/python-science.scm (python-opt-einsum): New variable. Ricardo Wurmus2022-07-081-0/+32
* gnu: Add python-deepdish.•••* gnu/packages/python-science.scm (python-deepdish): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Antero Mejr2022-07-031-0/+36
* gnu: python-modin: Update to 0.15.1.•••* gnu/packages/python-science.scm (python-modin): Update to 0.15.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan2022-06-261-2/+2
* gnu: python-scikit-image: Update to 0.19.3.•••* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.3. Vinicius Monego2022-06-181-2/+2
* gnu: Add PyGLM.•••* gnu/packages/python-science.scm (python-pyglm): New variable. Eric Bavier2022-06-081-0/+27
* gnu: Remove python2-scipy.•••* gnu/packages/python-science.scm (python2-scipy): Delete variable. (python-scipy)[properties]: Delete field. Maxim Cournoyer2022-05-311-24/+0
* gnu: Remove python2-weave.•••* gnu/packages/python-science.scm (python2-weave): Delete variable. Maxim Cournoyer2022-05-311-33/+0
* gnu: Remove python2-pandas.•••* gnu/packages/python-science.scm (python2-pandas): Delete variable. (python-pandas): Delete related python2-variant property. Maxim Cournoyer2022-05-311-98/+0
* gnu: python-distributed: Update to 2022.05.2.•••* gnu/packages/python-science.scm (python-distributed): Update to 2022.05.2. [arguments]: Remove 'sanity-check phase; adjust 'check phase. [propagated-inputs]: Add python-urllib3. [native-inputs]: Add python-pytest-timeout and python-flaky. Ricardo Wurmus2022-05-311-14/+134
* gnu: Add python-gpy.•••* gnu/packages/python-science.scm (python-gpy): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Wiktor Zelazny2022-05-291-0/+28
* gnu: Add python-paramz.•••* gnu/packages/python-science.scm (python-paramz): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Wiktor Zelazny2022-05-291-0/+34
* gnu: Add python-climin.•••* gnu/packages/python-science.scm (python-climin): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Wiktor Zelazny2022-05-291-0/+22
* gnu: Add python-pyvista.•••* gnu/packages/python-science.scm (python-pyvista): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience2022-05-231-0/+52
* gnu: Add python-aplus.•••* gnu/packages/python-science.scm (python-aplus): New variable. Ricardo Wurmus2022-05-201-0/+17
* gnu: python-pingouin: Update to 0.5.1.•••* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.1. Maxim Cournoyer2022-05-121-2/+2
* gnu: python-pandas: Update to 1.4.2.•••* gnu/packages/python-science.scm (python-pandas): Update to 1.4.2. Maxim Cournoyer2022-05-121-2/+2
* gnu: python-pandas: Build and run tests in parallel.•••* gnu/packages/python-science.scm (python-pandas) [phases]{enable-parallel-build}: New phase. {check}: Add xdist -n option. Skip test_memory_usage test. [native-inputs]: Add python-pytest-xdist. Maxim Cournoyer2022-05-121-1/+13
* gnu: python-scipy: Update to 1.8.0 and enable parallel build.•••* gnu/packages/python-science.scm (python-scipy): Update to 1.8.0. [modules]: New argument. [phases]{disable-broken-tests}: Delete phase. {configure-openblas}: Streamline configuration template. {parallelize-build}: New phase. {install-doc}: Move before 'check phase. Remove now extraneous 'add-installed-pythonpath' call. Remove the SPHINXBUILD and PYVER Make variables, as well as conf.py patching. Provide SPHINXOPTS to build doc in parallel. Simply recursively copy the 'html' output directory to install the doc. {check}: Remove extraneous INPUTS and OUTPUTS arguments. Start tests with the 'runtests.py' launcher, which accepts a '-j' argument to run the tests in parallel. [native-inputs]: Sort inputs. Add python-pytest-xdist and python-threadpoolctl. [home-page]: Update. Maxim Cournoyer2022-05-121-55/+36
* gnu: python-scipy: Move input fields below arguments field.•••* gnu/packages/python-science.scm (python-scipy): Move inputs fields below the arguments field. [phases]: Use gexp. {configure-openblas}: Use this-package-input. {check}: Remove extraneous 'add-installed-pythonpath' call. {install-doc}: Adjust accordingly. Maxim Cournoyer2022-05-121-78/+77
* gnu: python-vedo: Update to 2022.2.0.•••* gnu/packages/python-science.scm (python-vedo): Update to 2022.2.0. [arguments]: Add 'fix-tests' phase. [inputs]: Move fenics and python-matplotlib to propagated-inputs. Move python-pkgconfig from here... [native-inputs]: ...to here. [propagated-inputs]: Add python-deprecated (and fenics and python-matplotlib). [description]: Make description more accurate. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience2022-05-061-12/+19
* gnu: python-vedo: Disable sanity check.•••* gnu/packages/python-science.scm (python-vedo)[arguments]: Disable sanity check. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience2022-05-061-1/+5
* gnu: python-vedo: Remove input labels.•••* gnu/packages/python-science.scm (python-vedo)[inputs]: Remove labels and sort the inputs. [propagated-inputs]: Remove labels. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience2022-05-061-5/+5
* gnu: python-vedo: Honor #:tests? flag.•••* gnu/packages/python-science.scm (python-vedo)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. Also remove its trailing boolean. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience2022-05-061-9/+9
* gnu: Add python-traittypes.•••* gnu/packages/python-science.scm (python-traittypes): New variable. Ricardo Wurmus2022-05-061-0/+36
* gnu: Add python-trimesh.•••* gnu/packages/python-science.scm (python-trimesh): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes2022-04-071-0/+40
* gnu: Add python-numpy-groupies.•••* gnu/packages/python-science.scm (python-numpy-groupies): New variable. Ricardo Wurmus2022-03-311-1/+24
* gnu: Add python-scikit-allel.•••* gnu/packages/python-science.scm (python-scikit-allel): New variable. Efraim Flashner2022-03-181-1/+50
* gnu: python-scipy: Adjust phases.•••* gnu/packages/python-science.scm (python-scipy)[arguments]: Replace 'check with custom 'check phase. Efraim Flashner2022-03-171-4/+1
* gnu: python-scikit-image: Update to 0.19.2.•••* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.2. Vinicius Monego2022-03-031-3/+3
* gnu: python-scikit-image: Update to 0.19.1.•••* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.1. [propagated-inputs]: Add PYTHON-PYTHRAN. [native-inputs]: Remove PYTHON-CODECOV, PYTHON-FLAKE8, PYTHON-PYTEST-COV, and PYTHON-WHEEL. Marius Bakke2022-02-191-8/+5
* gnu: Add python-pythran.•••* gnu/packages/python-science.scm (python-pythran): New variable. Marius Bakke2022-02-191-0/+60
* gnu: python-upsetplot: Update to 0.6.0.•••* gnu/packages/python-science.scm (python-upsetplot): Update to 0.6.0. [source](modules, snippet): New fields. [arguments]: Remove obsolete phase. Respect TESTS? in check phase. Marius Bakke2022-01-221-10/+15
* gnu: python-pandas: Remove old version.•••* gnu/packages/python-science.scm (python-pandas-0.25): Remove variable. (python2-pandas): Inherit from PYTHON-PANDAS. Marius Bakke2022-01-221-24/+1
* Merge branch 'version-1.4.0'•••With resolved conflicts in: gnu/packages/gnome.scm gnu/packages/openstack.scm gnu/packages/python-xyz.scm Maxim Cournoyer2022-01-171-15/+14
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| * gnu: python-pandas: Update to 1.3.5.•••* gnu/packages/python-science.scm (python-pandas): Update to 1.3.5. [phases]{check}: Add a reference to the network accessing tests issue, now reported upstream. Reinstate the excelwriter tests. [propagated-inputs]: Add python-xlsxwriter. [native-inputs]: Remove python-nose. Maxim Cournoyer2022-01-101-15/+14
* | gnu: python-scikit-fuzzy: Disable tests.•••* gnu/packages/python-science.scm (python-scikit-fuzzy)[arguments]: Add #:tests?. Remove #:phases. Marius Bakke2022-01-121-7/+1
* | gnu: python-modin: Permit newer versions of pandas.•••* gnu/packages/python-science.scm (python-modin)[arguments]: Add phase. Marius Bakke2022-01-121-1/+7
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* gnu: python-scipy: Update to 1.7.3.•••* gnu/packages/python-science.scm (python-scipy): Update to 1.7.3. [native-inputs]: Add python-pydata-sphinx-theme, python-sphinx-panels. [arguments]: Add phase to build without python-pythran. Remove trailing #t from phases. * gnu/packages/sphinx.scm (python-pydata-sphinx-theme)[native-inputs]: Remove python-plotly. Efraim Flashner2021-12-221-10/+11
* gnu: python-pingouin: Update to 0.5.0.•••* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0. Arun Isaac2021-12-221-2/+2
* Revert "gnu: python-pingouin: Update to 0.5.0."•••This reverts commit f2ad33bc3933b710e5beb6592a9a4925b91b199a. python-pingouin after 0.3.12 needs newer versions of all the python science libraries. Efraim Flashner2021-12-211-2/+2
* gnu: python-pyflow: Rename to python2-pyflow.•••The package was never compatible with Python 3. Not adding a deprecated package variant, because going from Python 3 to Python 2 is a breaking change and it’s unlikely anyone ever used the package anyway (it was likely broken). * gnu/packages/python-science.scm (python-pyflow): Move… (python2-pyflow): …here. [arguments]: Use Python 2. Lars-Dominik Braun2021-12-161-3/+6
* gnu: python-distributed: Update to 2021.11.2.•••* gnu/packages/python-science.scm (python-distributed): Update to 2021.11.2. [source](snippet): New field. [arguments]: Add versioneer phase. [native-inputs]: Add PYTHON-VERSIONEER. Marius Bakke2021-12-131-3/+8
* gnu: Simplify package inputs.•••This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès2021-12-131-151/+127
* gnu: python2-scipy: Override native inputs.•••* gnu/packages/python-science.scm (python2-scipy)[native-inputs]: Override; replace gfortran with gfortran-7; add gcc-7. Ricardo Wurmus2021-12-091-1/+10
* Merge branch 'master' into core-updates-frozenLudovic Courtès2021-11-171-7/+8
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| * gnu: python-pingouin: Update to 0.5.0.•••* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0. Arun Isaac2021-11-151-2/+2