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* gnu: Add python-trimesh.•••* gnu/packages/python-science.scm (python-trimesh): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes2022-04-071-0/+40
* gnu: Add python-numpy-groupies.•••* gnu/packages/python-science.scm (python-numpy-groupies): New variable. Ricardo Wurmus2022-03-311-1/+24
* gnu: Add python-scikit-allel.•••* gnu/packages/python-science.scm (python-scikit-allel): New variable. Efraim Flashner2022-03-181-1/+50
* gnu: python-scipy: Adjust phases.•••* gnu/packages/python-science.scm (python-scipy)[arguments]: Replace 'check with custom 'check phase. Efraim Flashner2022-03-171-4/+1
* gnu: python-scikit-image: Update to 0.19.2.•••* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.2. Vinicius Monego2022-03-031-3/+3
* gnu: python-scikit-image: Update to 0.19.1.•••* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.1. [propagated-inputs]: Add PYTHON-PYTHRAN. [native-inputs]: Remove PYTHON-CODECOV, PYTHON-FLAKE8, PYTHON-PYTEST-COV, and PYTHON-WHEEL. Marius Bakke2022-02-191-8/+5
* gnu: Add python-pythran.•••* gnu/packages/python-science.scm (python-pythran): New variable. Marius Bakke2022-02-191-0/+60
* gnu: python-upsetplot: Update to 0.6.0.•••* gnu/packages/python-science.scm (python-upsetplot): Update to 0.6.0. [source](modules, snippet): New fields. [arguments]: Remove obsolete phase. Respect TESTS? in check phase. Marius Bakke2022-01-221-10/+15
* gnu: python-pandas: Remove old version.•••* gnu/packages/python-science.scm (python-pandas-0.25): Remove variable. (python2-pandas): Inherit from PYTHON-PANDAS. Marius Bakke2022-01-221-24/+1
* Merge branch 'version-1.4.0'•••With resolved conflicts in: gnu/packages/gnome.scm gnu/packages/openstack.scm gnu/packages/python-xyz.scm Maxim Cournoyer2022-01-171-15/+14
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| * gnu: python-pandas: Update to 1.3.5.•••* gnu/packages/python-science.scm (python-pandas): Update to 1.3.5. [phases]{check}: Add a reference to the network accessing tests issue, now reported upstream. Reinstate the excelwriter tests. [propagated-inputs]: Add python-xlsxwriter. [native-inputs]: Remove python-nose. Maxim Cournoyer2022-01-101-15/+14
* | gnu: python-scikit-fuzzy: Disable tests.•••* gnu/packages/python-science.scm (python-scikit-fuzzy)[arguments]: Add #:tests?. Remove #:phases. Marius Bakke2022-01-121-7/+1
* | gnu: python-modin: Permit newer versions of pandas.•••* gnu/packages/python-science.scm (python-modin)[arguments]: Add phase. Marius Bakke2022-01-121-1/+7
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* gnu: python-scipy: Update to 1.7.3.•••* gnu/packages/python-science.scm (python-scipy): Update to 1.7.3. [native-inputs]: Add python-pydata-sphinx-theme, python-sphinx-panels. [arguments]: Add phase to build without python-pythran. Remove trailing #t from phases. * gnu/packages/sphinx.scm (python-pydata-sphinx-theme)[native-inputs]: Remove python-plotly. Efraim Flashner2021-12-221-10/+11
* gnu: python-pingouin: Update to 0.5.0.•••* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0. Arun Isaac2021-12-221-2/+2
* Revert "gnu: python-pingouin: Update to 0.5.0."•••This reverts commit f2ad33bc3933b710e5beb6592a9a4925b91b199a. python-pingouin after 0.3.12 needs newer versions of all the python science libraries. Efraim Flashner2021-12-211-2/+2
* gnu: python-pyflow: Rename to python2-pyflow.•••The package was never compatible with Python 3. Not adding a deprecated package variant, because going from Python 3 to Python 2 is a breaking change and it’s unlikely anyone ever used the package anyway (it was likely broken). * gnu/packages/python-science.scm (python-pyflow): Move… (python2-pyflow): …here. [arguments]: Use Python 2. Lars-Dominik Braun2021-12-161-3/+6
* gnu: python-distributed: Update to 2021.11.2.•••* gnu/packages/python-science.scm (python-distributed): Update to 2021.11.2. [source](snippet): New field. [arguments]: Add versioneer phase. [native-inputs]: Add PYTHON-VERSIONEER. Marius Bakke2021-12-131-3/+8
* gnu: Simplify package inputs.•••This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès2021-12-131-151/+127
* gnu: python2-scipy: Override native inputs.•••* gnu/packages/python-science.scm (python2-scipy)[native-inputs]: Override; replace gfortran with gfortran-7; add gcc-7. Ricardo Wurmus2021-12-091-1/+10
* Merge branch 'master' into core-updates-frozenLudovic Courtès2021-11-171-7/+8
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| * gnu: python-pingouin: Update to 0.5.0.•••* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0. Arun Isaac2021-11-151-2/+2
| * gnu: python-scipy: Run tests conditionally.•••* gnu/packages/python-science.scm (python-scipy)[arguments]: Respect TESTS? in 'CHECK phase. Ricardo Wurmus2021-11-151-5/+6
* | gnu: python-pandas: Update to 1.3.4.•••* gnu/packages/python-science.scm (python-pandas): Update to 1.3.4. Efraim Flashner2021-10-251-2/+2
* | gnu: python-pandas: Fix building with pytest-6.•••* gnu/packages/python-science.scm (python-pandas)[arguments]: In custom 'check phase adjust to not fail tests with missing test data. Efraim Flashner2021-10-251-0/+3
* | gnu: python-pandas: Honor #:tests? flag.•••* gnu/packages/python-science.scm (python-pandas)[arguments]: Adjust custom 'check phase to honor the #:tests? flag. Efraim Flashner2021-10-251-14/+15
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* gnu: python-distributed: Update to 2021.09.1.•••* gnu/packages/python-science.scm (python-distributed): Update to 2021.09.1. [arguments]: Disable failing test test_text. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2021-10-121-4/+6
* gnu: python-pandas: Update to 1.3.3.•••* gnu/packages/python-science.scm (python-pandas): Update to 1.3.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2021-10-121-2/+3
* gnu: python2-pandas: Fix build by reverting inherited fields.•••* gnu/packages/python-science.scm (python2-pandas)[arguments]: Do not inherit field; revert to values at commit c0d43f62232507b441edf28c3f051921dfb04c2a. [propagated-inputs]: Do not inherit. [inputs]: Same. [native-inputs]: Same. Ricardo Wurmus2021-09-291-2/+55
* gnu: Add python-modin.•••* gnu/packages/python-science.scm (python-modin): New variable. Ricardo Wurmus2021-07-281-0/+65
* gnu: Add python-distributed.•••* gnu/packages/python-science.scm (python-distributed): New variable. Ricardo Wurmus2021-07-281-0/+75
* gnu: python-pandas: Update to 1.3.0.•••* gnu/packages/python-science.scm (python-pandas): Update to 1.3.0. [arguments]: Adjust check phase. Ricardo Wurmus2021-07-281-32/+38
* gnu: Add python-pingouin.•••* gnu/packages/python-science.scm (python-pingouin): New variable. Arun Isaac2021-07-131-0/+74
* gnu: Add python-pandas-flavor.•••* gnu/packages/python-science.scm (python-pandas-flavor): New variable. Arun Isaac2021-07-131-0/+28
* gnu: python-numpy, python-scipy: Remove dependency on lapack.•••The dependency on lapack was unused; the LAPACK interface of OpenBLAS is used instead. The dependency on lapack was added in cba256f8faaa18457fc9b77e8b401f17b89bdd75 (numpy) and 719b01c1575b8599b0dca9f245a9d759032f3168 (scipy). * gnu/packages/python-science.scm (python-scipy)[inputs]: Remove LAPACK. * gnu/packages/python-xyz.scm (python-numpy)[inputs]: Likewise. Ludovic Courtès2021-06-221-2/+1
* gnu: Add python-ruffus.•••* gnu/packages/python-science.scm (python-ruffus): New variable. Ricardo Wurmus2021-06-141-0/+31
* gnu: python-vedo: Make pkg-config a native input.•••* gnu/packages/python-science.scm (python-vedo)[inputs]: Move pkg-config to... [native-inputs]: ...here. Paul Garlick2021-06-021-2/+3
* gnu: Add python-vedo.•••* gnu/packages/python-science.scm (python-vedo): New variable. Paul Garlick2021-06-011-0/+63
* gnu: Add python-pyflow.•••* gnu/packages/python-science.scm (python-pyflow): New variable. Roel Janssen2021-05-311-0/+22
* gnu: python-scikit-image: Enable tests.•••* gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add phases related to tests. [native-inputs]: Add python-codecov, python-flake8, python-pytest, python-pytest-cov, python-pytest-localserver, python-wheel. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego2021-03-131-3/+27
* gnu: python-scikit-image: Update to 0.18.1.•••* gnu/packages/python-science.scm (python-scikit-image): Update to 0.18.1. [propagated-inputs]: Remove python-six. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego2021-03-131-5/+4
* gnu: Add python-upsetplot.•••* gnu/packages/python-science.scm (python-upsetplot): New variable. Ricardo Wurmus2021-03-121-0/+37
* gnu: Add python-statannot.•••* gnu/packages/python-science.scm (python-statannot): New variable. Ricardo Wurmus2021-03-121-1/+27
* gnu: python-scipy: Update to 1.6.0.•••* gnu/packages/python-xyz.scm (python-scipy): Update to 1.6.0. [inputs]: Add pybind11. [arguments]<#:phases>['change-home-dir]: New phase. Signed-off-by: Jelle Licht <jlicht@fsfe.org> Greg Hogan2021-02-091-3/+10
* gnu: Add python-baycomp.•••* gnu/packages/python-science.scm (python-baycomp): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego2020-11-241-0/+26
* gnu: Add python-sgp4.•••* gnu/packages/python-science.scm (python-sgp4): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Vinicius Monego2020-08-161-0/+20
* gnu: Add python-bottleneck.•••* gnu/packages/python-science.scm (python-bottleneck): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Vinicius Monego2020-08-101-0/+30
* gnu: python-scikit-image: Add dependencies.•••* gnu/packages/python-science.scm (python-scikit-image)[propagated-inputs]: Add python-imageio and python-tifffile. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego2020-07-081-1/+3
* gnu: Add python-scikit-fuzzy.•••* gnu/packages/python-science.scm (python-scikit-fuzzy): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego2020-07-081-0/+32
* gnu: Add python-msgpack-numpy.•••* gnu/packages/python-science.scm (python-msgpack-numpy): New variable. Ricardo Wurmus2020-06-231-0/+25