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* gnu: Add python-plotnine.•••* gnu/packages/python-science.scm (python-plotnine): New variable. Ricardo Wurmus2023-07-131-0/+98
* gnu: python-pandas-flavor: Update to 0.5.0.•••* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.5.0. [propagated-inputs]: Add python-lazy-loader and python-packaging. [home-page]: Update. Arun Isaac2023-06-291-4/+4
* gnu: python-distributed: Disable timeout test.•••* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_nanny_timeout, because it times out. Ricardo Wurmus2023-06-291-0/+3
* gnu: python-trimesh: Update to 3.22.1.•••* gnu/packages/python-science.scm (python-trimesh): Update to 3.22.1. [arguments]<#:phases>: Update path in 'fix-build' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience2023-06-251-3/+3
* gnu: Add python-pytensor.•••* gnu/packages/python-science.scm (python-pytensor): New variable. Vinicius Monego2023-06-251-0/+77
* gnu: Add python-xarray-einstats.•••* gnu/packages/python-science.scm (python-xarray-einstats): New variable. Vinicius Monego2023-06-251-0/+24
* gnu: python-xarray: Update to 2023.6.0.•••* gnu/packages/python-science.scm (python-xarray): Update to 2023.6.0. [build-system]: Switch to pyproject-build-system. [arguments]: Do not override the check phase. Vinicius Monego2023-06-251-10/+4
* gnu: Add python-einops.•••* gnu/packages/python-science.scm (python-einops): New variable. Vinicius Monego2023-06-251-0/+34
* gnu: python-pyvista: Update to 0.39.1.•••* gnu/packages/python-science.scm (python-pyvista): Update to 0.39.1. [propagated-inputs]: Add python-pooch, remove python-appdirs. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience2023-06-201-5/+5
* gnu: python-distributed: Update to 2023.4.1.•••* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1. [source]: Remove snippet. [arguments]: Update build phase 'versioneer; restore 'sanity-check phase; simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-importlib-metadata. Ricardo Wurmus2023-05-111-165/+180
* gnu: python-scikit-optimize: Fix build with newer numpy and sklearn.•••* gnu/packages/patches/python-scikit-optimize-1148.patch, gnu/packages/patches/python-scikit-optimize-1150.patch: New patches. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with git and apply patches. Ricardo Wurmus2023-05-101-3/+11
* gnu: python-bottleneck: Honor #:tests? flag.•••* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust custom 'check phase to honor the #:tests? flag. Efraim Flashner2023-05-081-2/+3
* gnu: python-bottleneck: Update to 1.3.7.•••* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7. Efraim Flashner2023-05-081-4/+4
* gnu: python-distributed: Fix build.•••* gnu/packages/python-science.scm (python-distributed)[build-system]: Use pyproject-build-system. [arguments]: Hide deprecation warnings from tornado, because they break almost all tests; disable three more tests. Ricardo Wurmus2023-04-261-1/+12
* Merge branch 'master' into core-updates.•••Conflicts: gnu/local.mk gnu/packages/build-tools.scm gnu/packages/certs.scm gnu/packages/check.scm gnu/packages/compression.scm gnu/packages/cups.scm gnu/packages/fontutils.scm gnu/packages/gnuzilla.scm gnu/packages/guile.scm gnu/packages/ibus.scm gnu/packages/image-processing.scm gnu/packages/linux.scm gnu/packages/music.scm gnu/packages/nss.scm gnu/packages/pdf.scm gnu/packages/python-xyz.scm gnu/packages/qt.scm gnu/packages/ruby.scm gnu/packages/shells.scm gnu/packages/tex.scm gnu/packages/video.scm gnu/packages/vulkan.scm gnu/packages/web.scm gnu/packages/webkit.scm gnu/packages/wm.scm Maxim Cournoyer2023-04-141-45/+120
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| * gnu: python-scikit-allel: Use pyproject-build-system.•••* gnu/packages/python-science.scm (python-scikit-allel): Move up to create alphabetic order. [build-system]: Use pyproject-build-system. [arguments]: Provide test flags instead of overriding 'check phase; split out build step into new 'build-ext phase. Disable roh_mhmm tests. Ricardo Wurmus2023-03-241-49/+52
| * gnu: Add python-scikit-optimize.•••* gnu/packages/python-science.scm (python-scikit-optimize): New variable. Ricardo Wurmus2023-03-241-19/+47
| * gnu: Add python-libneuroml.•••* gnu/packages/python-science.scm (python-libneuroml): New variable. Lars-Dominik Braun2023-03-211-1/+26
| * gnu: Add python-pylems.•••* gnu/packages/python-science.scm (python-pylems): New variable. Lars-Dominik Braun2023-03-211-0/+20
* | gnu: python-scipy: Update to 1.10.1.•••* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1. [build-system]: Use pyproject-build-system. [arguments]: Add #:build-backend argument. Remove loosen-requirements, build and install phases. [native-inputs]: Remove python-pypa-build. Maxim Cournoyer2023-04-111-21/+11
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* gnu: Add python-pydicom.•••* gnu/packages/python-science.scm (python-pydicom): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Antero Mejr2023-01-081-0/+51
* gnu: python-sgp4: Move to astronomy.•••* gnu/packages/astronomy.scm: (python-sgp4): Move here from python-science.scm. [description]: Expand description, annotate acronyms, add link to CelesTrak. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sharlatan Hellseher2022-12-051-20/+0
* gnu: python-sgp4: Update to 2.21.•••The latest version passes build on aarch64-linux system. * gnu/packages/python-science.scm (python-sgp4): Update to 2.21. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sharlatan Hellseher2022-12-051-2/+2
* gnu: python-msgpack-numpy: Update to 0.4.8.•••* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8. Navid Afkhami2022-12-021-2/+2
* gnu: Add python-tspex.•••* gnu/packages/python-science.scm (python-tspex): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami2022-11-111-0/+20
* gnu: Add python-pyts.•••* gnu/packages/python-science.scm (python-pyts): New variable. Ricardo Wurmus2022-11-041-0/+41
* gnu: Add python-simple-pid.•••* gnu/packages/python-science.scm (python-simple-pid): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> jgart2022-10-181-0/+25
* Merge branch 'master' into stagingMarius Bakke2022-09-291-0/+20
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| * gnu: Add python-simplespectral.•••* gnu/packages/python-science.scm (python-simplespectral): New variable. Guillaume Le Vaillant2022-09-281-0/+20
* | Merge branch 'master' into staging.•••With resolved conflicts in: gnu/local.mk gnu/packages/crates-io.scm Maxim Cournoyer2022-09-271-0/+58
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| * gnu: Add python-vaex-core.•••* gnu/packages/python-science.scm (python-vaex-core): New variable. Ricardo Wurmus2022-09-251-0/+58
* | gnu: python-cython: Remove duplicate version.•••* gnu/packages/python-xyz.scm (python-cython-0.29.32): Remove variable. * gnu/packages/python-science.scm (python-pandas)[native-inputs]: Change from PYTHON-CYTHON-0.29.32 to PYTHON-CYTHON. Marius Bakke2022-09-181-1/+1
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* gnu: python-pandas: Update to 1.4.4.•••* gnu/packages/python-science.scm (python-pandas): Update to 1.4.4. [native-inputs]: Change from PYTHON-CYTHON to PYTHON-CYTHON-0.29.32. Marius Bakke2022-09-181-3/+3
* gnu: python-scipy: Update to 1.9.1.•••* gnu/packages/python-science.scm (python-scipy): Update to 1.9.1. [source]: Switch to GIT-FETCH. [outputs]: Remove. [arguments]: Don't disable Pythran. Don't configure OpenBLAS which is now discovered by pkg-config. Do a "manual" PEP 517 style build. Make install-doc phase conditional on the presence of Sphinx. Simplify tests. [propagated-inputs]: Add PYTHON-PYTHRAN. [native-inputs]: Remove PERL, WHICH, PYTHON-NUMPYDOC, PYTHON-PYDATA-SPHINX-THEME, PYTHON-SPHINX, and PYTHON-SPHINX-PANELS. Add GCC, PKG-CONFIG, PYTHON-PYPA-BUILD and PYTHON-MESON. Marius Bakke2022-09-161-53/+59
* gnu: python-pingouin: Don't pin scikit-learn version.•••* gnu/packages/python-science.scm (python-pingouin)[arguments]: Add phase. Marius Bakke2022-09-141-0/+7
* gnu: python-pingouin: Update to 0.5.2.•••* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.2. [arguments]: Adjust outdated substitution. Marius Bakke2022-09-111-3/+3
* gnu: Add comments to the bottom of a few package modules.•••This will hopefully discourage patches which add new packages to the bottom of files, as this increases the likelihood of conflicts when applying patches. If there are more specific ways that packages should be arranged in specific modules, this message can be updated accordingly. * gnu/packages/bioconductor.scm: Add comment discouraging adding packages to the bottom of the file. * gnu/packages/bioinformatics.scm: ditto. * gnu/packages/cran.scm: ditto. * gnu/packages/crates-io.scm: ditto. * gnu/packages/emacs-xyz.scm: ditto. * gnu/packages/golang.scm: ditto. * gnu/packages/guile-xyz.scm: ditto. * gnu/packages/haskell-xyz.scm: ditto. * gnu/packages/java.scm: ditto. * gnu/packages/julia-xyz.scm: ditto. * gnu/packages/lisp-xyz.scm: ditto. * gnu/packages/ocaml.scm: ditto. * gnu/packages/perl.scm: ditto. * gnu/packages/python-science.scm: ditto. * gnu/packages/python-xyz.scm: ditto. * gnu/packages/ruby.scm: ditto. * gnu/packages/tex.scm: ditto. Christopher Baines2022-09-101-0/+6
* gnu: python-pyvista: Update to 0.36.1.•••* gnu/packages/python-science.scm (python-pyvista): Update to 0.36.1. Signed-off-by: Marius Bakke <marius@gnu.org> Paul A. Patience2022-09-071-2/+2
* gnu: python-pyvista: Update to 0.35.2.•••* gnu/packages/python-science.scm (python-pyvista): Update to 0.35.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Paul A. Patience2022-08-021-2/+2
* gnu: Add python-geosketch.•••* gnu/packages/python-science.scm (python-geosketch): New variable. Ricardo Wurmus2022-08-021-0/+23
* gnu: Add python-fbpca.•••* gnu/packages/python-science.scm (python-fbpca): New variable. Ricardo Wurmus2022-08-021-0/+20
* gnu: python-pyvista: Update to 0.35.1.•••* gnu/packages/python-science (python-pyvista): Update to 0.35.1. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience2022-07-151-2/+2
* gnu: Add python-opt-einsum.•••* gnu/packages/python-science.scm (python-opt-einsum): New variable. Ricardo Wurmus2022-07-081-0/+32
* gnu: Add python-deepdish.•••* gnu/packages/python-science.scm (python-deepdish): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Antero Mejr2022-07-031-0/+36
* gnu: python-modin: Update to 0.15.1.•••* gnu/packages/python-science.scm (python-modin): Update to 0.15.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan2022-06-261-2/+2
* gnu: python-scikit-image: Update to 0.19.3.•••* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.3. Vinicius Monego2022-06-181-2/+2
* gnu: Add PyGLM.•••* gnu/packages/python-science.scm (python-pyglm): New variable. Eric Bavier2022-06-081-0/+27
* gnu: Remove python2-scipy.•••* gnu/packages/python-science.scm (python2-scipy): Delete variable. (python-scipy)[properties]: Delete field. Maxim Cournoyer2022-05-311-24/+0
* gnu: Remove python2-weave.•••* gnu/packages/python-science.scm (python2-weave): Delete variable. Maxim Cournoyer2022-05-311-33/+0
* gnu: Remove python2-pandas.•••* gnu/packages/python-science.scm (python2-pandas): Delete variable. (python-pandas): Delete related python2-variant property. Maxim Cournoyer2022-05-311-98/+0
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