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* gnu: llvm: Update to 3.8.1.•••* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 3.8.1. (llvm-3.7, clang-runtime-3.7, clang-3.7): New variables. (clang-runtime-from-llvm)[arguments]: Disable tests, which were not being run for previous versions anyhow but now fail hard. (clang-from-llvm): Add #:patches keyword argument. * gnu/packages/patches/clang-3.8-libc-search-path.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. Co-authored-by: Dennis Mungai <dmngaie@gmail.scm> Eric Bavier2016-07-181-0/+69
* Revert "gnu: gnutls: Fix test failure."•••This reverts commit 1d14bf9f5ff43ff9097f1c5e1e2d37528eb74971. Leo Famulari2016-07-181-50/+0
* gnu: gd: Fix failing test on i686.•••* gnu/packages/patches/gd-fix-test-on-i686.patch: New file. * gnu/local.mk (dist_PATCH_DATA): Add it. * gnu/packages/gd.scm (gd)[source]: Add the patch. Mark H Weaver2016-07-181-0/+34
* gnu: gnutls: Fix test failure.•••* gnu/packages/patches/gnutls-fix-stale-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tls.scm (gnutls)[replacement]: New field. (gnutls/fixed): New variable. Leo Famulari2016-07-181-0/+50
* gnu: gd: Fix CVE-2016-{5766,6128,6132,6214}.•••* gnu/packages/patches/gd-CVE-2016-5766.patch, gnu/packages/patches/gd-CVE-2016-6128.patch, gnu/packages/patches/gd-CVE-2016-6132.patch, gnu/packages/patches/gd-CVE-2016-6214.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gd.scm (gd): Use patches. Leo Famulari2016-07-164-0/+455
* gnu: libmtp: Update to 1.1.11.•••* gnu/packages/patches/libmtp-devices.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch. * gnu/packages/libusb.scm (libmtp): Update to 1.1.11. Ricardo Wurmus2016-07-101-554/+0
* gnu: Add python-dendropy.•••* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New variables. * gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft2016-07-091-0/+21
* gnu: sudo: Update to 1.8.17p1.•••* gnu/packages/admin.scm (sudo): Update to 1.8.17p1. [source]: Remove patch. * gnu/packages/patches/sudo-CVE-2015-5602.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner2016-07-061-372/+0
* gnu: ninja: Update to 1.7.1.•••* gnu/packages/ninja.scm (ninja): Update to 1.7.1. * gnu/packages/patches/ninja-tests.patch: Update patch. Efraim Flashner2016-07-031-15/+19
* gnu: openimageio: Update to 1.6.15.•••* gnu/packages/graphics.scm (openimageio): Update to 1.6.15. [source]: Remove patch. * gnu/packages/patches/openimageio-boost-1.60.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner2016-07-031-47/+0
* gnu: gimp: Fix CVE-2016-4994.•••* gnu/packages/patches/gimp-CVE-2016-4994.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gimp.scm (gimp): Use it. Leo Famulari2016-07-021-0/+96
* gnu: avrdude: Use libusb-compat.•••* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch. [inputs]: Replace "libusb" with "libusb-compat". Ricardo Wurmus2016-06-291-256/+0
* gnu: Add khmer.•••* gnu/packages/bioinformatics.scm (khmer): New variable. * gnu/packages/patches/khmer-use-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft2016-06-271-0/+16
* daemon: Rename 'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'.•••Partly fixes <http://bugs.gnu.org/22459>. Reported by Jeff Mickey <j@codemac.net> and David Craven <david@craven.ch>. * nix/libstore/globals.cc (Settings::processEnvironment()): Change 'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'. * nix/local.mk (libstore_a_CPPFLAGS): Likewise. * guix/config.scm.in (%config-directory): Likewise. * build-aux/test-env.in: Likewise. * gnu/packages/patches/hydra-automake-1.15.patch: Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Craven2016-06-261-2/+2
* gnu: beets: Update to 1.3.18.•••* gnu/packages/patches/beets-image-test-failure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/music.scm (beets): Update to 1.3.18. [source]: Use patch. Leo Famulari2016-06-221-0/+46
* gnu: nasm: Make build bit-reproducible.•••* gnu/packages/patches/nasm-no-ps-pdf.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/assembly.scm (nasm): Use it. Remove ghostscript, do not build PS or PDF docs. Makes build bit-reproducible. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jan Nieuwenhuizen2016-06-211-0/+20
* gnu: Add ruby-puma.•••gnu/packages/ruby.scm (ruby-puma): New variable. gnu/packages/patches/ruby-puma-ignore-broken-test.patch: New file. gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft2016-06-211-0/+13
* gnu: Add awesome.•••* gnu/packages/wm.scm (awesome): New variable. * gnu/packages/patches/awesome-reproducible-png.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Carlo Zancanaro2016-06-161-0/+14
* gnu: openssl: Fix CVE-2016-2177 and CVE-2016-2178.•••* gnu/packages/patches/openssl-CVE-2016-2177.patch, gnu/packages/patches/openssl-CVE-2016-2178.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/tls.scm (openssl/fixed): Use them. Leo Famulari2016-06-152-0/+398
* gnu: Add teensy-loader-cli.•••* gnu/packages/flashing-tools.scm (teensy-loader-cli): New variable. * gnu/packages/patches/teensy-loader-cli-help.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Hartmut Goebel2016-06-151-0/+33
* gnu: expat: Fix CVE-2012-6702 and CVE-2016-5300.•••* gnu/packages/patches/expat-CVE-2012-6702-and-CVE-2016-5300.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xml.scm (expat/fixed): Use it. Leo Famulari2016-06-101-0/+142
* gnu: higan: Various improvements.•••* gnu/packages/games.scm (higan): Use semi-official repository at GitLab (using hotfix tag 098b which is equivalent to official release 098). Add a patch to remove the build flag -march=native. Set profile to balanced. * gnu/packages/patches/higan-remove-march-native-flag.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Taylan Ulrich Bayırlı/Kammer2016-06-101-0/+13
* Revert "gnu: libxml2: Add fix for CVE-2016-1762."•••This reverts commit 6e4f18cfdd1bf747e77f81b64497f1c05f57a057. Mark H Weaver2016-06-081-31/+0
* gnu: libxml2: Add fix for CVE-2016-1762.•••* gnu/packages/patches/libxml2-CVE-2016-1762.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xml.scm (libxml2/fixed)[source]: Add patch. Mark H Weaver2016-06-081-0/+31
* gnu: icecat: Add fixes for CVE-2016-{2818,2819,2821,2824,2828,2831}.•••* gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch, gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch, gnu/packages/patches/icecat-CVE-2016-2819.patch, gnu/packages/patches/icecat-CVE-2016-2821.patch, gnu/packages/patches/icecat-CVE-2016-2824.patch, gnu/packages/patches/icecat-CVE-2016-2828.patch, gnu/packages/patches/icecat-CVE-2016-2831.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patches. Mark H Weaver2016-06-0814-0/+1449
* gnu: libvpx: Add fix for CVE-2016-2818.•••* gnu/packages/patches/libvpx-CVE-2016-2818.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/video.scm (libvpx)[source]: Add patch. Mark H Weaver2016-06-081-0/+36
* gnu: Add ruby-concurrent.•••* gnu/packages/ruby.scm (ruby-concurrent): New variable. * gnu/packages/patches/ruby-concurrent-ignore-broken-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft2016-06-081-0/+16
* gnu: Add ruby-tzinfo-data.•••* gnu/packages/ruby.scm (ruby-tzinfo-data): New variable. * gnu/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft2016-06-081-0/+13
* gnu: imagemagick: Update to 6.9.4-7.•••* gnu/packages/patches/imagemagick-CVE-2016-5118.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-7. [source]: Remove patch. Leo Famulari2016-06-031-29/+0
* gnu: icedtea: Update to 1.13.11.•••Fixes CVE-2016-{0686, 0687, 0695, 3425, 3427}. * gnu/packages/patches/icedtea-remove-overrides.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/java.scm (icedtea): Update to 1.13.11. [source]: Use the patch. [inputs]: Add libxcomposite. Leo Famulari2016-06-011-0/+291
* gnu: imagemagick: Fix CVE-2016-5118.•••* gnu/packages/patches/imagemagick-CVE-2016-5118.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/imagemagick.scm (imagemagick): Use it. Leo Famulari2016-05-311-0/+29
* gnu: graphicsmagick: Update to 1.3.24 [security update].•••Fixes CVE-2016-{2317, 2318, 5118} and many other security issues described in 'NEWS.txt'. * gnu/packages/patches/graphicsmagick-CVE-2016-5118.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.24. [source]: Remove patch. Leo Famulari2016-05-311-19/+0
* gnu: libxml2: Update replacement to 2.9.4 [security fixes].•••This fixes CVE-2016-{1762, 1833, 1834, 1835, 1836, 1837, 1838, 1839, 1840, 3627, 3705, 4483}. * gnu/packages/patches/libxml2-CVE-2016-3627.patch, gnu/packages/patches/libxml2-CVE-2016-3705.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/xml.scm (libxml2/fixed): Update to 2.9.4. [source]: Remove patches. Leo Famulari2016-05-302-129/+0
* gnu: mcrypt: Fix CVE-2012-4409, CVE-2012-4426, CVE-2012-4527.•••* gnu/packages/mcrypt.scm (mcrypt)[source]: Add patches. * gnu/packages/patches/mcrypt-CVE-2012-4409.patch, gnu/packages/patches/mcrypt-CVE-2012-4426.patch, gnu/packages/patches/mcrypt-CVE-2012-4527.patch: New variables. * gnu/local.mk (dist_patch_DATA): Add them. Efraim Flashner2016-05-303-0/+180
* gnu: wordnet: Fix CVE-2008-2149, CVE-2008-3908.•••* gnu/packages/wordnet.scm (wordnet)[source]: Add patches. * gnu/packages/patches/wordnet-CVE-2008-2149.patch, gnu/packages/patches/wordnet-CVE-2008-3908-pt1.patch, gnu/packages/patches/wordnet-CVE-2008-3908-pt2.patch: New variables. * gnu/local.mk (dist_patch_DATA): Add them. Efraim Flashner2016-05-303-0/+747
* gnu: id3lib: Fix CVE-2007-4460.•••* gnu/packages/mp3.scm (id3lib)[source]: Add patch. * gnu/packages/patches/id3lib-CVE-2007-4460.patch: New variable. * gnu/local.mk (dist_patch_DATA): Add it. Efraim Flashner2016-05-301-0/+54
* gnu: devil: Fix CVE-2009-3994.•••* gnu/packages/patches/devil-CVE-2009-3994.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image.scm (devil): Use it. Leo Famulari2016-05-301-0/+24
* gnu: emacs: Fix indentation of scheme keyword lists.•••* gnu/packages/patches/emacs-fix-scheme-indent-function.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/emacs.scm (emacs)[source]: Use it. Alex Kost2016-05-301-0/+29
* gnu: gegl: Fix CVE-2012-4433.•••* gnu/packages/gimp.scm (gegl)[source]: Add patch. * gnu/packages/patches/gegl-CVE-2012-4433.patch: New variable. * gnu/local.mk (dist_patch_DATA): Add it. Efraim Flashner2016-05-301-0/+117
* gnu: vte-0.28: Fix CVE-2012-2738.•••* gnu/packages/gnome.scm (vte-0.28)[source]: Add patches. * gnu/packages/patches/vte-CVE-2012-2738-pt1.patch, gnu/packages/patches/vte-CVE-2012-2738-pt2.patch: New variables. * gnu/local.mk (dist_patch_DATA): Add them. Efraim Flashner2016-05-302-0/+122
* gnu: t1lib: Fix CVE-2010-2642, CVE-2011-{0764, 1552, 1553, 1554}.•••* gnu/packages/fontutils.scm (t1lib)[source]: Add patches. * gnu/packages/patches/t1lib-CVE-2010-2642.patch, gnu/packages/patches/t1lib-CVE-2011-0764.patch, gnu/packages/patches/t1lib-CVE-2011-1552+CVE-2011-1553+CVE-2011-1554.patch: New variables. * gnu/local.mk (dist_patch_DATA): Add them. Efraim Flashner2016-05-303-0/+189
* gnu: jansson: Fix CVE-2016-4425.•••* gnu/packages/web.scm (jansson)[source]: Add patch. * gnu/packages/patches/jansson-CVE-2016-4425.patch: New variable. * gnu/local.mk (dist_patch_DATA): Add it. Efraim Flashner2016-05-301-0/+125
* gnu: antiword: Fix CVE-2014-8123.•••* gnu/packages/textutils.scm (antiword)[source]: Add patch. * gnu/packages/patches/antiword-CVE-2014-8123: New variable. * gnu/local.mk (dist_patch_DATA): Add it. Efraim Flashner2016-05-301-0/+21
* gnu: a2ps: Fix CVE-2001-1593, CVE-2014-0466.•••* gnu/packages/pretty-print.scm (a2ps)[source]: Add patches. * gnu/packages/patches/a2ps-CVE-2001-1593.patch, gnu/packages/patches/a2ps-CVE-2014-0466.patch: New variables. * gnu/local.mk (dist_patch_DATA): Add them. Efraim Flashner2016-05-302-0/+99
* gnu: pcre2: Fix CVE-2016-3191.•••* gnu/packages/patches/pcre2-CVE-2016-3191.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pcre.scm (pcre2): Use it. Leo Famulari2016-05-291-0/+179
* gnu: libyaml: Fix CVE-2014-9130.•••* gnu/packages/patches/libyaml-CVE-2014-9130.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/web.scm (libyaml): Use it. Leo Famulari2016-05-291-0/+30
* gnu: graphicsmagick: Fix CVE-2016-5118.•••* gnu/packages/patches/graphicsmagick-CVE-2016-5118.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/imagemagick.scm (graphicsmagick): Use it. Leo Famulari2016-05-291-0/+19
* gnu: vorbis-tools: Fix CVE-2014-9638, CVE-2014-9639, CVE-2014-9640.•••* gnu/packages/xiph.scm (vorbis-tools)[source]: Add patches. * gnu/packages/patches/vorbis-tools-CVE-2014-9638+CVE-2014-9639.patch, gnu/packages/patches/vorbis-tools-CVE-2014-9640.patch: New variables. * gnu/local.mk (dist_patch_DATA): Add them. Efraim Flashner2016-05-302-0/+112
* gnu: libtar: Fix CVE-2013-4420.•••* gnu/packages/compression.scm (libtar)[source]: Add patch. * gnu/packages/patches/libtar-CVE-2013-4420.patch: New variable. * gnu/local.mk (dist_patch_DATA): Add it. This is a follow-up to 89d80159b1da81c4017b46a575c3ec5dd9a96c90. Efraim Flashner2016-05-301-0/+118
* gnu: rpm: Fix CVE-2014-8118.•••* gnu/packages/patches/rpm-CVE-2014-8118.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/package-management.scm (rpm): Use it. Leo Famulari2016-05-291-0/+25
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