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* gnu: python-pandas: Move to (gnu packages python-science).•••* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from here... * gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here. * gnu/packages/benchmark.scm, gnu/packages/databases.scm, gnu/packages/graph.scm, gnu/packages/parallel.scm, gnu/packages/serialization.scm: Import (gnu packages python-science). Ricardo Wurmus2019-12-041-0/+1
* gnu: parallel: Update to 20191122.•••* gnu/packages/parallel.scm (parallel): Update to 20191122. Tobias Geerinckx-Rice2019-11-231-2/+2
* gnu: slurm: Allow builds on 32-bit platforms.•••Fixes a regression introduced in 7c96befa52ba127f68a066162258e600afbc73fb whereby ./configure would fail on 32-bit platforms due to 32-bit support being "deprecated". * gnu/packages/parallel.scm (slurm)[arguments]: Pass "--enable-deprecated" configure flag unless 'target-64bit?' returns true. Ludovic Courtès2019-11-171-1/+6
* gnu: openmpi, slurm: Switch to hwloc 2.x.•••* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise. Ludovic Courtès2019-11-151-1/+1
* gnu: slurm: Build shared libraries only.•••* gnu/packages/parallel.scm (slurm)[arguments]: Pass "--disable-static". Ludovic Courtès2019-11-151-0/+1
* gnu: slurm: Update to 19.05.3-2.•••* gnu/packages/parallel.scm (slurm): Update to 19.05.3-2. [source](snippet): Keep "contribs/mpi" and its reference in 'Makefile.am'. [inputs]: Remove OPENSSL. [arguments]: Remove "--with-ssl". Add 'install-libpmi' phase. Ludovic Courtès2019-11-151-7/+23
* gnu: parallel: Update to 20191022.•••* gnu/packages/parallel.scm (parallel): Update to 20191022. Tobias Geerinckx-Rice2019-10-221-2/+2
* gnu: parallel: Update to 20190922.•••* gnu/packages/parallel.scm (parallel): Update to 20190922. Tobias Geerinckx-Rice2019-09-221-2/+2
* gnu: parallel: Update to 20190822.•••* gnu/packages/parallel.scm (parallel): Update to 20190822. Tobias Geerinckx-Rice2019-08-231-2/+2
* gnu: Add python-slurm-magic.•••* gnu/packages/parallel.scm (python-slurm-magic): New variable. Ludovic Courtès2019-06-181-1/+52
* gnu: parallel: Update to 20190522.•••* gnu/packages/parallel.scm (parallel): Update to 20190522. Tobias Geerinckx-Rice2019-05-231-2/+2
* gnu: parallel: Update to 20190422.•••* gnu/packages/parallel.scm (parallel): Update to 20190422. Tobias Geerinckx-Rice2019-04-221-2/+2
* gnu: slurm: Configure with a "standard" syslogdir.•••Until now, we were using syslogdir=$prefix/etc, which did not exist. Thus, commands would always fail like this: $ guix environment --ad-hoc slurm --pure -- squeue -u $USER squeue: error: s_p_parse_file: unable to status file /gnu/store/…-slurm-17.11.3/etc/slurm.conf: No such file or directory, retrying in 1sec up to 60sec * gnu/packages/parallel.scm (slurm)[arguments]: Pass --sysconfdir. Ludovic Courtès2019-04-161-1/+1
* gnu: parallel: Update to 20190322.•••* gnu/packages/parallel.scm (parallel): Update to 20190322. Tobias Geerinckx-Rice2019-03-221-3/+2
* gnu: parallel: Update to 20190222.•••* gnu/packages/parallel.scm (parallel): Update to 20190222. Tobias Geerinckx-Rice2019-02-241-2/+2
* gnu: parallel: Update to 20190122.•••* gnu/packages/parallel.scm (parallel): Update to 20190122. Tobias Geerinckx-Rice2019-02-121-3/+3
* gnu: parallel: Update to 20181222.•••* gnu/packages/parallel.scm (parallel): Update to 20181222. Rutger Helling2018-12-241-2/+2
* gnu: parallel: Update to 20181122.•••* gnu/packages/parallel.scm (parallel): Update to 20181122. Efraim Flashner2018-11-281-2/+2
* gnu: parallel: Update to 20181022.•••* gnu/packages/parallel.scm (parallel): Update to 20181022. Tobias Geerinckx-Rice2018-10-271-2/+2
* gnu: parallel: Update to 20180922.•••* gnu/packages/parallel.scm (parallel): Update to 20180922. Tobias Geerinckx-Rice2018-09-241-3/+3
* gnu: parallel: Update to 20180822.•••* gnu/packages/parallel.scm (parallel): Update to 20180822. Ludovic Courtès2018-08-241-2/+2
* gnu: parallel: Update to 20180722.•••* gnu/packages/parallel.scm (parallel): Update to 20180722. Efraim Flashner2018-07-301-3/+3
* gnu: parallel: Remove 'bash' input.•••Because it's implicit. * gnu/packages/parallel.scm (parallel)[inputs]: Remove 'bash'. Clément Lassieur2018-06-221-3/+1
* gnu: parallel: Wrap program instead of substituting 'ps' and 'perl'.•••* gnu/packages/parallel.scm (parallel)[arguments]: Replace 'ps' and 'perl' substitutions with a 'wrap-program' phase. Move the 'post-install-test' phase after it. [inputs]: Add bash. Clément Lassieur2018-06-221-6/+16
* gnu: parallel: Update to 20180622.•••* gnu/packages/parallel.scm (parallel): Update to 20180622. Clément Lassieur2018-06-211-2/+2
* gnu: parallel: Update to 20180522.•••* gnu/packages/parallel.scm (parallel): Update to 20180522. Tobias Geerinckx-Rice2018-05-231-2/+2
* gnu: parallel: Update to 20180422.•••* gnu/packages/parallel.scm (parallel): Update to 20180422. Rutger Helling2018-04-251-3/+3
* gnu: parallel: Update to 20180322.•••* gnu/packages/parallel.scm (parallel): Update to 20180322. Tobias Geerinckx-Rice2018-03-231-2/+2
* gnu: slurm: Update to 17.11.3.•••* gnu/packages/parallel.scm (slurm): Update to 17.11.3. Tobias Geerinckx-Rice2018-03-081-2/+2
* gnu: parallel: Update to 20180222.•••* gnu/packages/parallel.scm (parallel): Update to 20180222. Tobias Geerinckx-Rice2018-02-231-2/+2
* gnu: parallel: Update source hash.•••The upstream tarball changed almost immediately after release. See https://lists.gnu.org/archive/html/guix-devel/2018-01/msg00319.html. * gnu/packages/parallel.scm (parallel)[source]: Update hash. Tobias Geerinckx-Rice2018-01-231-1/+1
* gnu: parallel: Don't end phase with #<undefined>.•••* gnu/packages/parallel.scm (parallel)[arguments]: Use INVOKE. Tobias Geerinckx-Rice2018-01-221-4/+4
* gnu: parallel: Update to 20180122.•••* gnu/packages/parallel.scm (parallel): Update to 20180122. Tobias Geerinckx-Rice2018-01-221-2/+2
* gnu: slurm: Add detailed licence information.•••* gnu/packages/parallel.scm (slurm)[license]: Add more licences. Tobias Geerinckx-Rice2018-01-181-1/+6
* gnu: slurm: Use HTTPS for home page.•••* gnu/packages/parallel.scm (slurm)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2018-01-181-1/+1
* gnu: slurm: Update to 17.11.2.•••* gnu/packages/parallel.scm (slurm): Update to 17.11.2. [source]: Replace patch with less fragile SUBSTITUTE* in a snippet. [arguments]: Rename ‘autogen’ phase to ‘autoconf’. Use INVOKE. * gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice2018-01-181-6/+7
* gnu: parallel: Update to 20171222.•••* gnu/packages/parallel.scm (parallel): Update to 20171222. Rutger Helling2017-12-241-2/+2
* gnu: parallel: Update to 20171122.•••* gnu/packages/parallel.scm (parallel): Update to 20171122. Rutger Helling2017-11-241-2/+3
* gnu: slurm: Update to 16.05.11 [fixes CVE-2017-15566].•••* gnu/packages/parallel.scm (slurm): Update to 16.05.11. [source]: Use the recommended download URL. Leo Famulari2017-11-081-5/+4
* gnu: parallel: Update to 20171022.•••* gnu/packages/parallel.scm (parallel): Update to 20171022. Efraim Flashner2017-10-251-2/+2
* gnu: parallel: Update to 20170922.•••* gnu/packages/parallel.scm (parallel): Update to 20170922. Efraim Flashner2017-09-241-3/+3
* gnu: Put autoconf-related phases immediately after the 'unpack phase.•••* gnu/packages/audio.scm (audacity, rtmidi)[arguments]: Correct phases accordingly. * gnu/packages/bioinformatics.scm (mash, seek, vsearch, emboss, htslib-for-sambamba)[arguments]: Likewise. * gnu/packages/ci.scm (cuirass)[arguments]: Likewise. * gnu/packages/compression.scm (minizip, xdelta)[arguments]: Likewise. * gnu/packages/cpp.scm (libzen)[arguments]: Likewise. * gnu/packages/crypto.scm (opendht)[arguments]: Likewise. * gnu/packages/databases.scm (4store, mdbtools)[arguments]: Likewise. * gnu/packages/debug.scm (stress-make)[arguments]: Likewise. * gnu/packages/dns.scm (dnscrypt-proxy, dnscrypt-wrapper)[arguments]: Likewise. * gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Likewise. * gnu/packages/embedded.scm (libjaylink, openocd)[arguments]: Likewise. * gnu/packages/engineering.scm (gerbv)[arguments]: Likewise. * gnu/packages/erlang.scm (erlang)[arguments]: Likewise. * gnu/packages/ftp.scm (weex)[arguments]: Likewise. * gnu/packages/gnome.scm (dia)[arguments]: Likewise. * gnu/packages/gnunet.scm (gnurl, guile-gnunet)[arguments]: Likewise. * gnu/packages/gtk.scm (guile-rsvg, graphene)[arguments]: Likewise. * gnu/packages/guile.scm (guildhall, guile-ics, guile-sqlite3)[arguments]: Likewise. * gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Likewise. * gnu/packages/irc.scm (weechat)[arguments]: Likewise. * gnu/packages/java.scm (classpath-devel)[arguments]: Likewise. * gnu/packages/libreoffice.scm (libetonyek)[arguments]: Likewise. * gnu/packages/libusb.scm (hidapi)[arguments]: Likewise. * gnu/packages/linux.scm (gpm)[arguments]: Likewise. * gnu/packages/logging.scm (glog)[arguments]: Likewise. * gnu/packages/machine-learning.scm (ghmm)[arguments]: Likewise. * gnu/packages/mail.scm (dovecot-trees, dovecot-libsodium-plugin, esmtp) [arguments]: Likewise. * gnu/packages/messaging.scm (freetalk, libmesode, libstrophe)[arguments]: Likewise. * gnu/packages/microcom.scm (microcom)[arguments]: Likewise. * gnu/packages/ocaml.scm (ocaml-ssl)[arguments]: Likewise. * gnu/packages/parallel.scm (slurm)[arguments]: Likewise. * gnu/packages/pdf.scm (libharu)[arguments]: Likewise. * gnu/packages/samba.scm (cifs-utils)[arguments]: Likewise. * gnu/packages/serialization.scm (msgpack)[arguments]: Likewise. * gnu/packages/shells.scm (scsh)[arguments]: Likewise. * gnu/packages/telephony.scm (libiax2)[arguments]: Likewise. * gnu/packages/textutils.scm (dotconf)[arguments]: Likewise. * gnu/packages/version-control.scm (findnewest)[arguments]: Likewise. * gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Likewise. Kei Kebreau2017-09-041-3/+2
* gnu: parallel: Update to 20170822.•••* gnu/packages/parallel.scm (parallel): Update to 20170822. Efraim Flashner2017-08-251-2/+2
* gnu: parallel: Update to 20170722.•••* gnu/packages/parallel.scm (parallel): Update to 20170722. Tobias Geerinckx-Rice2017-07-221-2/+2
* gnu: hwloc: Add "lib" and "debug" outputs.•••* gnu/packages/mpi.scm (hwloc)[outputs]: New field. [arguments]: Add 'avoid-circular-references' phase. (openmpi)[inputs]: Use the "lib" output of HWLOC. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise. Ludovic Courtès2017-06-301-1/+1
* gnu: parallel: Update to 20170522.•••* gnu/packages/parallel.scm (parallel): Update to 20170522. Marius Bakke2017-05-281-2/+2
* gnu: parallel: Update to 20170422.•••* gnu/packages/parallel.scm (parallel): Update to 20170422. Ludovic Courtès2017-05-021-2/+2
* gnu: parallel: Update to 20170322.•••* gnu/packages/parallel.scm (parallel): Update to 20170322. Tobias Geerinckx-Rice2017-03-311-2/+2
* gnu: slurm: Update to 16.05.9.1.••• * gnu/packages/parallel.scm (slurm): Update to 16.05.9.1. * gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch: Removing two contribs which are added in the new version. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Carolili2017-02-111-2/+2
* gnu: parallel: Update to 20170122.•••* gnu/packages/parallel.scm (parallel): Update to 20170122. Ludovic Courtès2017-01-311-2/+2