| Commit message (Expand) | Author | Age | Files | Lines |
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| * | gnu: dealii: Upgrade to 9.0.1.•••* gnu/packages/patches/dealii-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1. Use patch.
[arguments]: Use new MPI configuration flags.
| Eric Bavier | 2019-02-13 | 1 | -6/+5 |
| * | gnu: Add ELPA.•••* gnu/packages/maths.scm (elpa, elpa-openmpi): New variables.
| Eric Bavier | 2019-02-13 | 1 | -1/+91 |
| * | gnu: petsc: Upgrade to 3.10.3.•••* gnu/packages/maths.scm (petsc): Upgrade to 3.10.3.
| Eric Bavier | 2019-02-13 | 1 | -2/+2 |
| * | gnu: scalapack: Remove use of deprecated MPI1 symbols.•••* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (scalapack)[source]: Use it.
| Eric Bavier | 2019-02-13 | 1 | -1/+2 |
| * | Merge branch 'staging' | Ludovic Courtès | 2019-02-09 | 1 | -2/+2 |
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| | * | Merge branch 'master' into staging | Marius Bakke | 2019-01-31 | 1 | -104/+133 |
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| | * \ | Merge branch 'master' into staging | Ludovic Courtès | 2019-01-20 | 1 | -2/+3 |
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| | * \ \ | Merge branch 'master' into staging | Marius Bakke | 2019-01-13 | 1 | -3/+3 |
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| | * \ \ \ | Merge remote-tracking branch 'origin/master' into staging | Efraim Flashner | 2019-01-09 | 1 | -94/+6 |
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| | * \ \ \ \ | Merge branch 'master' into staging | Marius Bakke | 2018-12-23 | 1 | -13/+21 |
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| | * \ \ \ \ \ | Merge branch 'master' into staging | Marius Bakke | 2018-12-22 | 1 | -10/+30 |
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| | * \ \ \ \ \ \ | Merge branch 'master' into staging | Marius Bakke | 2018-12-12 | 1 | -1/+1 |
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| | * \ \ \ \ \ \ \ | Merge branch 'master' into staging | Marius Bakke | 2018-12-09 | 1 | -11/+16 |
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| | * | | | | | | | | | gnu: OpenBLAS: Update to 0.3.4.•••* gnu/packages/maths.scm (openblas): Update to 0.3.4.
| Marius Bakke | 2018-12-04 | 1 | -2/+2 |
| * | | | | | | | | | | gnu: Add dune-pdelab.•••* gnu/packages/maths.scm (dune-pdelab): New variable.
| Ricardo Wurmus | 2019-02-08 | 1 | -0/+42 |
| * | | | | | | | | | | gnu: Add dune-functions.•••* gnu/packages/maths.scm (dune-functions): New variable.
| Ricardo Wurmus | 2019-02-08 | 1 | -0/+40 |
| * | | | | | | | | | | gnu: Add dune-typetree.•••* gnu/packages/maths.scm (dune-typetree): New variable.
| Ricardo Wurmus | 2019-02-08 | 1 | -0/+40 |
| * | | | | | | | | | | gnu: Add dune-alugrid.•••* gnu/packages/maths.scm (dune-alugrid): New variable.
| Ricardo Wurmus | 2019-02-08 | 1 | -0/+52 |
| * | | | | | | | | | | gnu: Add dune-localfunctions.•••* gnu/packages/maths.scm (dune-localfunctions): New variable.
| Ricardo Wurmus | 2019-02-08 | 1 | -0/+44 |
| * | | | | | | | | | | gnu: Add dune-istl.•••* gnu/packages/maths.scm (dune-istl): New variable.
| Ricardo Wurmus | 2019-02-08 | 1 | -0/+64 |
| * | | | | | | | | | | gnu: Add dune-grid.•••* gnu/packages/maths.scm (dune-grid): New variable.
| Ricardo Wurmus | 2019-02-08 | 1 | -0/+90 |
| * | | | | | | | | | | gnu: hdf5: Upgrade to 1.8.21.•••* gnu/packages/maths.scm (hdf5): Upgrade to 1.8.21.
[source]: Make version manipulations more readable using match.
| Eric Bavier | 2019-02-07 | 1 | -4/+5 |
| * | | | | | | | | | | gnu: hdf5: Remove use of deprecated MPI1 symbols.•••* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch,
gnu/packages/patches/hdf5-mpi-deprecations.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
| Eric Bavier | 2019-02-07 | 1 | -2/+4 |
| * | | | | | | | | | | gnu: superlu-dist: Remove use of deprecated MPI1 symbols.•••* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (superlu-dist)[source]: Use it.
| Eric Bavier | 2019-02-07 | 1 | -1/+2 |
| * | | | | | | | | | | gnu: Add dune-geometry.•••* gnu/packages/maths.scm (dune-geometry): New variable.
| Ricardo Wurmus | 2019-02-07 | 1 | -0/+41 |
| * | | | | | | | | | | gnu: Add dune-common.•••* gnu/packages/maths.scm (dune-common): New variable.
| Ricardo Wurmus | 2019-02-07 | 1 | -0/+69 |
| * | | | | | | | | | | gnu: wxmaxima: Update to 19.01.3.•••* gnu/packages/maths.scm (wxmaxima): Update to 19.01.3.
| Kei Kebreau | 2019-02-06 | 1 | -2/+2 |
| * | | | | | | | | | | gnu: maxima: Update to 5.42.2.•••* gnu/packages/maths.scm (maxima): Update to 5.42.2.
| Kei Kebreau | 2019-02-06 | 1 | -2/+2 |
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| * | | | | | | | | | gnu: maxima: Patch hardcoded paths.•••* gnu/packages/maths.scm: (maxima): Patch hardcoded paths.
[arguments]: Add the phase 'patch-paths' to replace references to sed,
dirname, and head with direct references to the store.
[inputs]: Add sed.
| Kei Kebreau | 2019-01-26 | 1 | -0/+12 |
| * | | | | | | | | | gnu: dealii-openmpi: Setup MPI for tests.•••* gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
| Eric Bavier | 2019-01-25 | 1 | -1/+5 |
| * | | | | | | | | | superlu-dist: Upgrade to 6.1.0.•••* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file.
* gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove
extraneous 'use-modules' in snippet.
[build-system]: Change to cmake-build-system.
[propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer
sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ...
[inputs]: ...here. Add openblas and combinatorial-blas.
[arguments]: Replace 'configure' phase with #:configure-flags. Add
'set-c++-standard' and 'omp-setup' phases. Remove
'create-install-directories, 'check', and 'install' phases, which are now
handled by cmake.
* gnu/local.mk (dist_patch_DATA): Add patch.
| Eric Bavier | 2019-01-25 | 1 | -79/+42 |
| * | | | | | | | | | scotch: Upgrade to 6.0.6.•••* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6.
[source]: Remove patches that have been fixed upstream.
[arguments]: Add 'install-metis' phase.
[outputs]: New field.
(pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'.
* gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch,
gnu/packages/patches/scotch-test-threading.patch: Delete files.
* gnu/packages/patches/scotch-integer-declarations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
| Eric Bavier | 2019-01-25 | 1 | -24/+23 |
| * | | | | | | | | | gnu: Add Combinatorial BLAS.•••* gnu/packages/maths.scm (combinatorial-blas): New variable.
* gnu/packages/patches/combinatorial-blas-awpm.patch,
gnu/packages/patches/combinatorial-blas-io-fix.patch: New files
* gnu/local.mk(dist_patch_DATA): Add them.
| Eric Bavier | 2019-01-25 | 1 | -0/+51 |
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| * | | | | | | | | gnu: z3: Update to 4.8.4.•••* gnu/packages/maths.scm (z3): Update to 4.8.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Amin Bandali | 2019-01-18 | 1 | -2/+2 |
| * | | | | | | | | gnu: Separate Python core packages from the rest.•••* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
| Ricardo Wurmus | 2019-01-15 | 1 | -0/+1 |
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| * | | | | | | | gnu: r-pracma: Update to 2.2.2.•••* gnu/packages/maths.scm (r-pracma): Update to 2.2.2.
| Ricardo Wurmus | 2019-01-12 | 1 | -3/+3 |
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| * | | | | | | gnu: Move OCaml packages away from maths.scm.•••This removes (gnu packages ocaml) and related build system modules from
the closure of (gnu packages maths).
* gnu/packages/maths.scm (ocaml-gsl, ocaml4.01-gsl, cubicle): Move to...
* gnu/packages/ocaml.scm: ... here.
| Ludovic Courtès | 2019-01-07 | 1 | -88/+1 |
| * | | | | | | gnu: octave: Fix makeinfo path configuration.•••* gnu/packages/maths.scm (octave-cli)[arguments]: Fix makeinfo path
configuration in configure-makeinfo phase.
| Arun Isaac | 2019-01-05 | 1 | -6/+5 |
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| * | | | | | gnu: z3: Update to 4.8.3 and provide python3 bindings•••* gnu/packages/maths.scm (z3): Update to 4.8.3.
[build-system]: Switch from cmake to make, and use the current
scripts/mk_make.py build script instead of the now-deprecated
contrib/cmake/bootstrap.py.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Amin Bandali | 2018-12-23 | 1 | -13/+21 |
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| * | | | | gnu: elemental: Don't use unstable tarball.•••* gnu/packages/maths.scm (elemental)[source]: Download source using
git-fetch.
| Efraim Flashner | 2018-12-17 | 1 | -5/+6 |
| * | | | | gnu: elemental: Fix indentation.•••* gnu/packages/maths.scm (elemental): Fix indentation of the package
definition.
| Efraim Flashner | 2018-12-17 | 1 | -3/+3 |
| * | | | | gnu: z3: Fix building on non-Intel machines.•••* gnu/packages/maths.scm (z3)[arguments]: Add phase to remove
unnecessary include statement.
| Efraim Flashner | 2018-12-17 | 1 | -0/+6 |
| * | | | | gnu: z3: Declare source-file-name.•••* gnu/packages/maths.scm (z3)[source]: Add missing 'file-name.
| Efraim Flashner | 2018-12-17 | 1 | -0/+1 |
| * | | | | gnu: hypre: Replace texlive input with minimal texlive-union.•••* gnu/packages/maths.scm (hypre)[native-inputs]: Replace texlive with minimal
texlive-union.
| Pierre Neidhardt | 2018-12-14 | 1 | -2/+14 |
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| * | | | gnu: petsc-openmpi: Ensure compatibility of SCOTCH dependency.•••* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Replace pt-scotch
with pt-scotch32 in order to prevent 'incompatible pointer' warnings
being generated in the 'build' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul Garlick | 2018-12-10 | 1 | -1/+1 |
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| * | | gnu: Rename "qtoctave" to "octave".•••* gnu/packages/maths.scm (qtoctave): Define in terms of 'deprectated-package'.
(octave): New variable, formerly known as "qtoctave".
| Kei Kebreau | 2018-12-08 | 1 | -2/+5 |
| * | | gnu: Rename "octave" to "octave-cli".•••* gnu/packages/maths.scm (octave): Rename to...
(octave-cli): ...this.
[name]: Change to "octave-cli".
(qtoctave): Inherit from octave-cli.
(flann)[inputs]: Adjust accordingly.
* gnu/packages/engineering.scm (qucs)[inputs]: Likewise.
(qucs-s)[inputs]: Likewise.
* gnu/packages/machine-learning.scm (shogun)[inputs]: Likewise.
| Kei Kebreau | 2018-12-08 | 1 | -8/+8 |
| * | | gnu: petsc-openmpi: Configure with support for HYPRE preconditioner.•••* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi.
[arguments]: Add 'with-hypre=1' flag.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul Garlick | 2018-12-04 | 1 | -1/+3 |
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| * | Merge branch 'master' into core-updates | Marius Bakke | 2018-11-29 | 1 | -8/+9 |
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| | * | gnu: maxima: Update to 5.42.1.•••* gnu/packages/maths.scm (maxima): Update to 5.42.1.
| Kei Kebreau | 2018-11-28 | 1 | -2/+2 |
