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* gnu: why3: Update to 1.3.3.•••* gnu/packages/maths.scm (why3): Update to 1.3.3. [arguments]: Adjust for newer ocaml-num. Julien Lepiller2021-06-201-5/+5
* gnu: wxmaxima: Update to 21.05.2.•••* gnu/packages/maths.scm (wxmaxima): Update to 21.05.2. Kei Kebreau2021-06-141-2/+2
* gnu: maxima: Update to 5.45.0.•••* gnu/packages/maths.scm (maxima): Update to 5.45.0. Kei Kebreau2021-06-141-3/+3
* gnu: Rename qtbase to qtbase-5.•••This change was automated via the following command: $ git ls-files | xargs sed -i 's/,qtbase)/,qtbase-5)/g' $ git ls-files | xargs sed -i 's/inherit qtbase)/inherit qtbase-5)/g' $ git ls-files | xargs sed -i 's/package-version qtbase)/package-version qtbase-5)/g' $ git checkout etc # to clear some spurious changes This is done so the qtbase package can be upgraded to version 6 in the following commit. Maxim Cournoyer2021-06-141-5/+5
* gnu: qalculate-gtk: Update to 3.19.0.•••* gnu/packages/maths.scm (qalculate-gtk): Update to 3.19.0. [phases]: Remove 'add-pot-file. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Jack Hill2021-06-121-11/+2
* gnu: libqalculate: Update to 3.19.0.•••* gnu/packages/maths (libqalculate): Update to 3.19.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Jack Hill2021-06-121-2/+2
* gnu: Add frama-c.•••* gnu/packages/maths.scm (frama-c): New variable. Julien Lepiller2021-06-021-0/+47
* gnu: Add why3.•••* gnu/packages/maths.scm (why3): New variable. Julien Lepiller2021-06-021-1/+66
* gnu: ipopt: Update to 3.13.4•••* gnu/packages/maths.scm (ipopt): Update to 3.13.4, update URL. [license]: Change to LICENSE:EPL2.0. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Eric Brown2021-05-281-14/+10
* gnu: Add cbc.•••* gnu/packages/maths.scm (cbc): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Eric Brown2021-05-281-0/+29
* gnu: qhull: Build position independent.•••* gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to build code position independent. Efraim Flashner2021-05-251-1/+2
* gnu: qhull: Link binaries to shared library.•••This drops the package size by nearly 60%. * gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to link binaries to shared library. Efraim Flashner2021-05-251-0/+2
* gnu: HYPRE: Update source and home page URLs.•••* gnu/packages/maths.scm (hypre)[source]: Change to new repository home. [home-page]: Follow redirect. Marius Bakke2021-05-241-2/+3
* gnu: Fix erroneous uses of 'package/inherit'.•••These packages use a different source/version from the inherited package, and thus should not inherit replacements. * gnu/packages/check.scm (googletest-1.8, python-pytest-runner-2): Use record inheritance instead of PACKAGE/INHERIT. * gnu/packages/crates-io.scm (rust-bindgen-0.49, rust-bytes-0.4, rust-colored-1.9.1, rust-difference-1, rust-docopt-0.8, rust-html5ever-0.23, rust-http-0.1, rust-http-body-0.1, rust-loom-0.2, rust-loom-0.1, rust-pulldown-cmark-0.0.8, rust-ring-0.13, rust-rustls-0.12, rust-sct-0.3, rust-term-0.2, rust-untrusted-0.6, rust-webpki-0.18, rust-webpki-roots-0.17, rust-webpki-roots-0.14): Likewise. * gnu/packages/emacs.scm (emacs-next, emacs-next-pgtk, guile-emacs): Likewise. * gnu/packages/guile.scm (guile-2.2.4): Likewise. * gnu/packages/maths.scm (hdf5-1.10, hdf5-1.12): Likewise. * gnu/packages/protobuf.scm (protobuf-3.6, protobuf-3.5, python-protobuf-3.6): Likewise. * gnu/packages/python-web.scm (python2-html2text): Likewise. * gnu/packages/python-xyz.scm (python-pygments/fixed, python2-numpy, python2-urwid, python2-markdown, python2-fonttools): Likewise. * gnu/packages/racket.scm (racket): Likewise. * gnu/packages/sequoia.scm (sequoia4pEp): Likewise. Marius Bakke2021-05-231-2/+4
* gnu: Add numdiff.•••* gnu/packages/maths.scm (numdiff): New variable. Paul A. Patience2021-05-211-0/+30
* gnu: hdf5: Fix invalid regex range.•••* gnu/packages/maths.scm (hdf5-1.8)[arguments]: Use [a-zA-Z] instead of [a-Z] as range in regular expression. Marius Bakke2021-05-181-1/+1
* gnu: qhull: Update to 2020.2.•••* gnu/packages/maths.scm (qhull): Update to 2020.2. Marius Bakke2021-05-181-3/+3
* gnu: arpack-ng@3.3: Don't use unstable source tarball.•••* gnu/packages/maths.scm (arpack-ng-3.3.0)[name, home-page]: Remove. [source]: Switch to GIT-FETCH. Inline uses of NAME and HOME-PAGE. Marius Bakke2021-05-151-6/+5
* gnu: arpack-ng: Update to 3.8.0.•••* gnu/packages/maths.scm (arpack-ng): Update to 3.8.0. [native-inputs]: Add PKG-CONFIG. [inputs]: Add EIGEN. Marius Bakke2021-05-151-4/+6
* gnu: Add cglm.•••* gnu/packages/maths.scm (cglm): New public variable. Tobias Geerinckx-Rice2021-05-061-0/+28
* gnu: Add libcerf.•••* gnu/packages/maths.scm (libcerf): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vinicius Monego2021-05-051-1/+25
* gnu: octave, octave-cli: Explain difference.•••* gnu/packages/maths.scm (octave-cli, octave): Extended synopsis. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen2021-05-031-2/+3
* gnu: xaos: Update to 4.2.1.•••* gnu/packages/maths.scm (xaos): Update to 4.2.1. [arguments]: Patch call to "lrelease" in XaoS.pro. Kei Kebreau2021-04-291-6/+8
* gnu: wxmaxima: Update to 21.04.0.•••* gnu/packages/maths.scm (wxmaxima): Update to 21.04.0. Kei Kebreau2021-04-211-2/+2
* gnu: blis: Add deprecated aliases.•••Add deprecated aliases for packages removed in the parent commit. * gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): New variables. Ludovic Courtès2021-04-121-0/+4
* gnu: blis: Update to 0.8.1.•••* gnu/packages/maths.scm (make-blis): Remove internal function. Inline into ... (bliss): ... this variable. Update to 0.8.1. [native-inputs]: Add "python" and "perl". [arguments]: Adjust 'configure' phase to take advantage of new support for "configuration families" with runtime hardware detection. Select configuration automatically based on target systems, and allow "--blis-config=" in #:configure-flags to override the default. When building for x86_64, include all supported microarchetecture specializations. Add "--enable-verbose-make" configure flag for better build logs. Stop ignoring other flags from #:configure-flags. Remove explicit #:substitutable? argument: the package is now always substitutable. Add (srfi srfi-1) to #:modules. (blis/x86_64): Remove internal macro. (blis-sandybridge): Remove package: included in 'blis'. (blis-haswell): Remove package: included in 'blis'. (blis-knl): Remove package: included in 'blis'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath2021-04-121-63/+79
* gnu: python-sip: Update to 5.5.0. Add python-sip-4•••* gnu/packages/qt.scm (python-sip): Update to 5.5.0. (python-sip-4): New variable. Rename the old python-sip to python-sip-4. (python2-sip): Inherit from python-sip-4. * gnu/packages/maths.scm (veusz)[native-inputs]: Use python-sip-4. * gnu/packages/pdf.scm (python-poppler-qt5): Use python-sip-4. * gnu/packages/geo.scm (qgis)[arguments]: Fix build for python-sip@5. Brendan Tildesley2021-04-091-1/+2
* gnu: Add scotch and pt-scotch with shared libraries•••* gnu/packages/maths.scm (scotch-shared, pt-scotch-shared): New variables. Signed-off-by: Leo Famulari <leo@famulari.name> Franck Pérignon2021-04-061-0/+80
* gnu: suitesparse: Update to 5.9.0.•••* gnu/packages/maths.scm (suitesparse): Update to 5.9.0. [arguments]: Use cc-for-target instead of hard-coding gcc. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Felix Gruber2021-04-051-5/+5
* gnu: metis: Add 'release-monitoring-url' property.•••* gnu/packages/maths.scm (metis)[properties]: New field. Ludovic Courtès2021-03-291-1/+4
* gnu: wxmaxima: Update to 21.02.0.•••* gnu/packages/maths.scm (wxmaxima): Update to 21.02.0. Kei Kebreau2021-03-131-2/+2
* gnu: octave: Update to 6.2.0.•••* gnu/packages/maths.scm (octave): Update to 6.2.0. [source]: Download tar.xz tarball. [native-inputs]: Remove lzip. Efraim Flashner2021-03-021-5/+4
* gnu: slepc: Use HTTPS home page URI.•••* gnu/packages/maths.scm (slepc)[home-page]: Use HTTPS URI. Nicolas Goaziou2021-02-281-1/+1
* gnu: elpa: Use HTTPS home page URI.•••* gnu/packages/maths.scm (elpa)[home-page]: Use HTTPS URI. Nicolas Goaziou2021-02-281-2/+2
* gnu: Add HDF5 1.12.0.•••* gnu/packages/maths.scm (hdf5-1.12): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Gerd Heber2021-02-211-0/+20
* gnu: wxmaxima: Update to 21.01.0.•••* gnu/packages/maths.scm (wxmaxima): Update to 21.01.0. [inputs]: Remove libomp. Kei Kebreau2021-02-091-4/+3
* gnu: hdf5: Update to 1.8.22.•••Fixes CVE-2018-14033, CVE-2018-11206, CVE-2018-13870, CVE-2018-13869, and CVE-2018-17435 * gnu/packages/maths.scm (hdf5-1.8): Update to 1.8.22. * gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch: Delete upstreamed patch. * gnu/local/mk (dist_patch_DATA): Remove it. Eric Bavier2021-02-081-5/+4
* gnu: wxmaxima: Update to 20.12.2.•••* gnu/packages/maths.scm (wxmaxima): Update to 20.12.2. [arguments]: Remove #:test-target and disable tests. Remove 'pre-check phase. [native-inputs]: Remove xorg-server-for-tests. [inputs]: Add libomp. Kei Kebreau2021-01-171-15/+7
* gnu: gnuplot: Update to 5.4.1.•••* gnu/packages/maths.scm (gnuplot): Update to 5.4.1. [arguments]: Set GNUTERM in #:make-flags. Kei Kebreau2021-01-171-3/+5
* gnu: suitesparse: Install libraries into /lib.•••* gnu/packages/maths.scm (suitesparse)[arguments]: Add to configure-flags to install programs built with cmake to use 'lib', not 'lib64.' Efraim Flashner2021-01-041-2/+3
* gnu: matio: Update to 1.5.19.•••* gnu/packages/maths.scm (matio): Update to 1.5.19. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vincent Legoll2020-12-311-2/+2
* gnu: octave, octave-cli: Update to 6.1.0.•••* gnu/packages/maths.scm (octave, octave-cli): Update to 6.1.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan2020-12-221-2/+2
* gnu: glpk: Don't build static library.•••* gnu/packages/maths.scm (glpk)[arguments]: Add configure-flag to skip static library. Efraim Flashner2020-12-171-1/+2
* gnu: glpk: Update to 5.0.•••* gnu/packages/maths.scm (glpk): Update to 5.0. (glpk-4.65): New variable. * gnu/packages/algebra.scm (giac)[inputs]: Replace glpk with glpk-4. Efraim Flashner2020-12-171-2/+16
* gnu: veusz: Update to 3.3.1.•••* gnu/packages/maths.scm (veusz): Update to 3.3.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego2020-12-131-2/+2
* gnu: sleef: Update to 3.5.1.•••* gnu/packages/maths.scm (sleef): Update to 3.5.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Vinicius Monego2020-12-121-2/+2
* gnu: dealii: Update to 9.2.0.•••* gnu/packages/maths.scm (dealii): Update to 9.2.0. Eric Bavier2020-12-091-2/+2
* gnu: Add tiny-bignum.•••* gnu/packages/maths.scm (tiny-bignum): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Ryan Prior2020-12-081-0/+52
* gnu: superlu-dist: Update to 6.4.0.•••* gnu/packages/maths.scm (superlu-dist): Update to 6.4.0 [source]: Use git-fetch, as tarballs are no longer published. * gnu/packages/patches/superlu-dist-awpm-grid.patch: Remove all but the first hunk; they are unnecessary. Eric Bavier2020-12-051-5/+8
* gnu: scotch: Update to 6.1.0•••* gnu/packages/maths.scm (scotch): Update to 6.1.0. Eric Bavier2020-12-051-3/+3