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* gnu: maths: dune-*: Update to version 2.7•••* gnu/packages/maths.scm (dune-*): Update to version 2.7. (dune-uggrid)[source] Download from Git, as no release tarball for version 2.7 exists. (dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no tags for version 2.7 exist (yet?). (dune-istl)[source](patches) Add patch required to build version 2.7 without openmpi. * gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-04-221-30/+35
* gnu: libqalculate: Fix libcurl gnutls CA cert bundle file.•••* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (libqalculate)[source]: Use it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> R Veera Kumar2020-04-201-1/+3
* gnu: dune-subgrid: Fix grammar of "allows to mark" to "marks".•••* gnu/packages/maths (dune-subgrid): Fix grammar. Vagrant Cascadian2020-04-121-1/+1
* gnu: libqalculate: Fix spelling of "uncertainty".•••* gnu/packages/maths (libqalculate): Fix typo. Vagrant Cascadian2020-04-121-1/+1
* gnu: Add dsfmt.•••* gnu/packages/maths.scm (dsfmt): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Nicolò Balzarotti2020-04-071-0/+76
* gnu: scotch: Make some inputs native.•••* gnu/packages/math.scm (scotch)[inputs]: Move flex & bison from here... [native-inputs]: ...to this new field. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Vincent Legoll2020-04-041-2/+4
* gnu: Add qalculate-gtk.•••* gnu/packages/maths.scm (qalculate-gtk): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> R Veera Kumar2020-04-031-0/+58
* gnu: Add libqalculate.•••* gnu/packages/maths.scm (libqalculate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> R Veera Kumar2020-04-031-0/+56
* gnu: z3: Fix build determinism.•••* gnu/packages/maths.scm (z3)[arguments]: Add a phase to set PYTHONHASHSEED=0. Jakub Kądziołka2020-03-291-0/+4
* gnu: Remove more packages deprecated for over almost a year.•••* gnu/packages/games.scm (armagetron-advanced) (cataclysm-dark-days-ahead, gnubackgammon, l-abbaye-des-morts) (the-battle-for-wesnoth, the-battle-for-wesnoth-server) (project-starfighter, kiki-the-nano-bot, fish-fillets-ng) (dungeon-crawl-stone-soup): Let's forget this ever happened. * gnu/packages/emacs-xyz.scm (geiser, paredit, git-modes/old-name) (magit, magit-svn, haskell-mode, emacs-emms-player-mpv, bbdb) (ert-runner, groovy-emacs-modes): Remove variable. * gnu/packages/engineering.scm (emacs-emms-player-simple-mpv) (emacs-evil-ediff, emacs-evil-mu4e, emacs-wgrep-helm, ao): Likewise. * gnu/packages/finance.scm (monero-core): Likewise. * gnu/packages/gnome.scm (dungeon-crawl-stone-soup-tiles) (tales-of-maj-eyal, battle-tanks, the-legend-of-edgar) (gnome-tweak-tool): Likewise. * gnu/packages/gnuzilla.scm (conkeror): Likewise. * gnu/packages/guile-xyz.scm (mcron2): Likewise. * gnu/packages/image.scm (pngcrunch): Likewise. * gnu/packages/linux.scm (eudev-with-hwdb): Likewise. * gnu/packages/maths.scm (qtoctave): Likewise. * gnu/packages/package-management.scm (guile2.0-guix): Likewise. * gnu/packages/php.scm (php-with-bcmath): Likewise. * gnu/packages/python-xyz.scm (python-kivy-next, python2-kivy-next): Likewise. * gnu/packages/video.scm (livestreamer): Likewise. * gnu/packages/virtualization.scm (lookingglass): Likewise. * gnu/packages/vulkan.scm (vulkan-icd-loader): Likewise. * gnu/packages/syndication.scm (newsbeuter): Likewise. (newsboat)[description]: Remove historical footnote. Tobias Geerinckx-Rice2020-03-291-3/+0
* Update email address and Savannah handle for Amin Bandali.•••* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address. * build-aux/git-authenticate.scm: Update my Savannah handle. Amin Bandali2020-03-281-1/+1
* gnu: armadillo: Fix typo in description.•••* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.". Nicolas Goaziou2020-03-281-1/+1
* gnu: wxmaxima: Update to 20.03.1.•••* gnu/packages/maths.scm (wxmaxima): Update to 20.03.1. Kei Kebreau2020-03-221-2/+2
* gnu: hdf-eos2: Use HTTPS home page.•••* gnu/packages/maths.scm (hdf-eos2)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-211-1/+1
* gnu: openlibm: Use HTTPS home page.•••* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-141-1/+1
* gnu: define dune-*-openmpi packages•••* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi, dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi, dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi, dune-localfunctions-openmpi, dune-functions-openmpi, dune-pdelab-openmpi): New variables. (add-openmpi-to-dune-package): New function to add openmpi to the inputs of a dune-* package and replace all dune-* packages in its input with the corresponding dune-*-openmpi package. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-141-0/+53
* gnu: dune-*: remove openmpi dependency•••* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency. [arguments]: remove code to setup openmpi for tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-141-30/+7
* gnu: suitesparse: Build with cmake-minimal.•••* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to CMAKE-MINIMAL. Marius Bakke2020-03-141-1/+1
* gnu: dune-istl: Build with suitesparse•••* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build additional solvers in dune-istl. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-121-0/+1
* gnu: Add dune-subgrid•••* gnu/packages/maths.scm (dune-subgrid): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-121-0/+43
* gnu: Add dune-uggrid.•••* gnu/packages/maths.scm (dune-uggrid): New variable. (dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so that the UGGrid class in dune-grid can be used by packages that have dune-grid as input. (dune-functions)[arguments]: Enable tests that previously weren't built as they require dune-uggrid. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-121-1/+52
* gnu: dune-*: set up MPI for tests•••* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl, dune-alugrid): [arguments]: correctly set up MPI instead of disabling tests that require MPI. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-121-100/+10
* gnu: speedcrunch: Use HTTPS home page.•••* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-091-1/+1
* gnu: openblas: Use HTTPS home page.•••* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-071-1/+1
* gnu: wxmaxima: Update to 20.02.4.•••* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4. [arguments]: Enable tests and set #:test-target to "test". [native-inputs]: Add xorg-server-for-tests. Kei Kebreau2020-03-061-5/+15
* gnu: SuiteSparse: Update to 5.7.1.•••* gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Felix Gruber2020-03-041-6/+20
* gnu: z3: Build the Python bindings•••* gnu/packages/maths.scm (z3)[arguments]: Add the --python and --pypkgdir flags to configure. To facilitate the latter, add (guix build python-build-system) to #:modules and #:imported-modules. Jakub Kądziołka2020-02-231-2/+10
* gnu: Add vinci.•••* gnu/packages/maths.scm (vinci): New variable. Andreas Enge2020-02-211-1/+46
* gnu: octave, octave-cli: Update to 5.2.0.•••* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0. [inputs]: Add bdb. Kei Kebreau2020-02-101-2/+4
* gnu: superlu-dist: Update to 6.2.0.•••* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0. [source]: Update upstream url. Remove mpi deprecations patch. * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Eric Bavier2020-01-311-6/+5
* gnu: superlu: Update upstream url.•••* gnu/packages/maths.scm (superlu)[source,home-page]: Update url. Eric Bavier2020-01-311-2/+2
* gnu: wxmaxima: Update to 20.01.3.•••* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3. [home-page]: Update URL. Kei Kebreau2020-01-231-3/+3
* gnu: elemental: Update home page.•••* gnu/packages/maths.scm (elemental)[home-page]: Use repository home page. Tobias Geerinckx-Rice2020-01-191-1/+1
* gnu: petsc: Use HTTPS home page.•••* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS. Tobias Geerinckx-Rice2020-01-191-2/+2
* gnu: Use HTTPS for www.hdfgroup.org.•••* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS. (hdf-java, h5check)[source]: Likewise. Tobias Geerinckx-Rice2020-01-171-4/+4
* gnu: netcdf: Use HTTPS home page.•••* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-01-171-1/+1
* gnu: scotch: Use HTTPS home page.•••* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-01-171-1/+1
* Update email address for Amin Bandali.•••* .mailmap: Add name and email addresses for Amin Bandali. * gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm: Update email address for Amin Bandali. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Amin Bandali2020-01-171-1/+1
* gnu: python-slepc4py: Update to 3.11.0.•••* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0. Paul Garlick2020-01-141-2/+2
* gnu: python-petsc4py: Update to 3.11.0.•••* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0. Paul Garlick2020-01-141-3/+3
* gnu: hdf5@1.10: Update to 1.10.6.•••* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6. Tobias Geerinckx-Rice2020-01-101-2/+2
* gnu: lapack: Update to 3.9.0.•••* gnu/packages/maths.scm (lapack): Update to 3.9.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen2020-01-071-13/+5
* gnu: hdf5@1.10: Update to 1.10.5.•••* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès2019-12-131-4/+3
* gnu: Add lrslib.•••* gnu/packages/maths.scm (lrslib): New variable. Andreas Enge2019-12-061-0/+39
* Merge branch 'staging'Marius Bakke2019-12-041-24/+9
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