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* Merge branch 'master' into core-updatesMark H Weaver2018-02-131-4/+6
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| * gnu: r-pracma: Update to 2.1.4.•••* gnu/packages/maths.scm (r-pracma): Update to 2.1.4. Ricardo Wurmus2018-02-131-2/+2
| * gnu: hdf5: Build with -fPIC.•••* gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS. Ricardo Wurmus2018-02-121-2/+4
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-091-0/+34
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| * gnu: mcrl2: Fix typo in synopsis.•••* gnu/packages/maths.scm (mcrl2)[synopsis]: Fix typo. [description]: Use @dfn. Tobias Geerinckx-Rice2018-02-081-5/+5
| * gnu: Add mcrl2.•••* gnu/packages/maths.scm (mcrl2): New variable. Jan Nieuwenhuizen2018-02-081-0/+34
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-031-2/+55
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| * gnu: slepc: Apply invoke to configure flags.•••Follow-up to 94a1eb96d32fcce97ee5d9440ecffe22f7555cd5 * gnu/packages/maths.scm (slepc)[arguments]: Use 'apply' since 'flags' is a list of configure arguments. Eric Bavier2018-02-021-1/+1
| * gnu: Add Elemental.•••* gnu/packages/maths.scm (elemental): New variable. Eric Bavier2018-02-021-1/+54
* | Merge branch 'master' into core-updatesMarius Bakke2018-02-011-10/+11
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| * gnu: slepc: Update to 3.8.2.•••* gnu/packages/maths.scm (slepc): Update to 3.8.2. Tobias Geerinckx-Rice2018-01-291-2/+2
| * gnu: slepc: Update licence.•••SLEPc has been released under a 2-clause BSD licence since version 3.8. * gnu/packages/maths.scm (slepc)[licence]: Switch to bsd-2. Tobias Geerinckx-Rice2018-01-291-1/+1
| * gnu: fbcat, slepc: Use INVOKE.•••* gnu/packages/linux.scm (fbcat)[arguments]: Substitute INVOKE for SYSTEM*. * gnu/packages/maths.scm (slepc)[arguments]: Likewise. Tobias Geerinckx-Rice2018-01-291-1/+1
| * gnu: openspecfun: Update to 0.5.3.•••* gnu/packages/maths.scm (openspecfun): Update to 0.5.3. Tobias Geerinckx-Rice2018-01-291-6/+7
* | gnu: opencascade-oce: Fix build with glibc 2.26.•••* gnu/packages/patches/opencascade-oce-glibc-2.26.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (opencascade-oce)[source]: Use it. Leo Famulari2018-01-161-0/+1
* | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2017-12-311-5/+15
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| * gnu: Fix copyright symbol.•••* gnu/packages/maths.scm: Fix copyright line for Dave Love. Ricardo Wurmus2017-12-241-1/+1
| * gnu, doc: Use HTTPS for cran.r-project.org home pages.•••* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm) (r-maldiquant, r-gprofiler)[home-page]: Use HTTPS. * gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape) (r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle) (r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim) (r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken) (r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise. * gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab) [home-page]: Likewise. * gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise. * gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign) (r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability) (r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr) (r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports) (r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops) (r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options) (r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel) (r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3) (r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots) (r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools) (r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp) (r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn) (r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]: Likewise. * gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]: Likewise. * doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise. Tobias Geerinckx-Rice2017-12-241-2/+2
| * gnu: openblas: Build with LAPACK.•••* gnu/packages/maths.scm (openblas)[arguments]: Don't disable LAPACK; add set-extralib phase. [inputs]: Add fortran-lib. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Dave Love2017-12-231-3/+13
* | Merge branch 'master' into core-updatesLeo Famulari2017-12-211-2/+2
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| * gnu: wxmaxima: Update to 17.10.1.•••* gnu/packages/maths.scm (wxmaxima): Update to 17.10.1. Kei Kebreau2017-12-191-2/+2
* | gnu: Remove redundant cmake libdir configure flags.•••* gnu/packages/bioinformatics.scm (imp)[arguments]: Remove CMAKE_INSTALL_LIBDIR flag. * gnu/packages/calendar.scm (libical): Same. * gnu/packages/engineering.scm (kicad): Same. * gnu/packages/games.scm (openrct2, mgba): Same. * gnu/packages/gl.scm (virtualgl): Same. * gnu/packages/image-processing.scm (mia): Same. * gnu/packages/linux.scm (rdma-core): Same. * gnu/packages/machine-learning.scm (dlib): Same. * gnu/packages/maths.scm (lapack, superlu, z3): Same. * gnu/packages/password-utils.scm (keepassxc): Same. * gnu/packages/photo.scm (darktable): Same. * gnu/packages/rdesktop.scm (freerdp): Same. Efraim Flashner2017-12-191-13/+2
* | Merge branch 'master' into core-updatesMarius Bakke2017-12-191-4/+4
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| * gnu: ceres-solver: Update to 1.13.0.•••* gnu/packages/maths.scm (ceres-solver): Update to 1.13.0. Eric Bavier2017-12-151-2/+2
| * gnu: glpk: Update to 4.64.•••* gnu/packages/maths.scm (glpk): Update to 4.64. Efraim Flashner2017-12-091-2/+2
* | Merge branch 'master' into core-updatesMarius Bakke2017-12-051-4/+5
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| * gnu: coda: Update to 2.18.3.•••* gnu/packages/maths.scm (coda): Update to 2.18.3. Tobias Geerinckx-Rice2017-12-041-2/+3
| * gnu: r-pracma: Update to 2.1.1.•••* gnu/packages/maths.scm (r-pracma): Update to 2.1.1. Ricardo Wurmus2017-11-301-2/+2
* | Merge branch 'master' into core-updatesMarius Bakke2017-11-191-5/+6
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| * gnu: Move more packages from python to python-web.•••* gnu/packages/python.scm (python-requests, python2-requests) (python-requests-2.7, python-oauthlib, python2-oauthlib) (python-furl, python2-furl, python-wsgi-intercept) (python-publicsuffix, python2-publicsuffix) (python-publicsuffix2, python2-publicsuffix2): Move to... * gnu/packages/python-web.scm: ... here. * gnu/packages/bioinformatics.scm, gnu/packages/finance.scm: gnu/packages/maths.scm, gnu/packages/terminals.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm: Adjust accordingly. Ludovic Courtès2017-11-161-0/+1
| * gnu: Remove "open source" from descriptions.•••All software in Guix is Free Software. * gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string. * gnu/packages/firmware.scm (seabios)[description]: Likewise. * gnu/packages/libupnp.scm (libupnp)[description]: Likewise. * gnu/packages/maths.scm (cubicle)[description]: Likewise. * gnu/packages/mingw.scm (mingw-w64)[description]: Likewise. * gnu/packages/game-development.scm (openmw)[description]: Likewise. [synopsis]: Remove "Free software". Ricardo Wurmus2017-11-081-5/+5
* | Merge branch 'master' into core-updatesMarius Bakke2017-11-021-2/+16
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| * gnu: units: Add readline input.•••* gnu/packages/maths.scm (units)[inputs]: Add readline. Eric Bavier2017-11-011-1/+2
| * gnu: units: Add python input.•••* gnu/packages/maths.scm (units)[inputs]: New field. [arguments]: New field. Add 'wrap-units_cur phase. Eric Bavier2017-11-011-0/+13
| * gnu: units: Update to 2.16.•••* gnu/packages/maths.scm (units): Update to 2.16. Eric Bavier2017-11-011-2/+2
* | Merge branch 'master' into core-updatesTobias Geerinckx-Rice2017-10-251-32/+9
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| * gnu: dealii: Update to 8.5.1.•••Fixes compilation with boost@1.64.0. * gnu/packages/maths.scm (dealii): Update to 8.5.1. Eric Bavier2017-10-241-2/+2
| * gnu: p4est: Update to 2.0.•••* gnu/packages/maths.scm (p4est): Update to 2.0. Eric Bavier2017-10-241-2/+2
| * gnu: libhilbert: Remove package.•••This package's source and webpage has disappeared for some time, and upstream projects (e.g. libmesh) seem to be bundling it, so we remove it for now. * gnu/packages/maths.scm (libhilbert): Remove variable. Eric Bavier2017-10-241-22/+0
| * gnu: slepc: Update to 3.8.0.•••* gnu/packages/maths.scm (slepc): Update to 3.8.0. Eric Bavier2017-10-241-2/+2
| * gnu: petsc: Update to 3.8.0.•••* gnu/packages/maths.scm (petsc): Update to 3.8.0 [native-inputs]: Remove perl, which is no longer needed. Eric Bavier2017-10-241-4/+3
* | Merge 'master' into core-updatesThomas Danckaert2017-10-161-2/+15
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| * gnu: maxima: Update to 5.41.0.•••* gnu/packages/maths.scm (maxima): Update to 5.41.0. Kei Kebreau2017-10-151-2/+2
| * gnu: Add lapack-3.5.•••* gnu/packages/maths.scm (lapack-3.5): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Theodoros Foradis2017-10-111-0/+13
* | Merge branch 'master' into core-updatesMarius Bakke2017-10-101-55/+185
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| * Merge branch 'staging'Marius Bakke2017-10-101-50/+50
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| | * Merge branch 'master' into stagingMarius Bakke2017-10-061-3/+14
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| | * \ Merge branch 'master' into stagingMarius Bakke2017-10-051-1/+1
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| | * | | gnu: Use 'modify-phases' syntax.•••* gnu/packages/admin.scm (mingetty, clusterssh, wpa-supplicant-minimal, wpa-supplicant, wakelan, acpica, tree, direvent, dstat)[arguments]: Use 'modify-phases' syntax. * gnu/packages/algebra.scm (arb)[arguments]: Likewise. * gnu/packages/apr.scm (apr-util)[arguments]: Likewise. * gnu/packages/audio.scm (clalsadrv, fluidsynth, faad2, lv2-mda-piano, lv2-mda-epiano, timidity++, vamp, soundtouch, portaudio, rsound, zita-convolver, zita-alsa-pcmi)[arguments]: Likewise. * gnu/packages/backup.scm (rdup, btar)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (bedops, bwa, crossmap, express, flexbar, grit, hisat, ngs-sdk, subread)[arguments]: Likewise. * gnu/packages/bittorrent.scm (transmission)[arguments]: Likewise. * gnu/packages/cdrom.scm (cd-discid)[arguments]: Likewise. * gnu/packages/compression.scm (sharutils)[arguments]: Likewise. * gnu/packages/conky.scm (conky)[arguments]: Likewise. * gnu/packages/databases.scm (bdb, bdb-5.3)[arguments]: Likewise. * gnu/packages/debug.scm (delta, c-reduce)[arguments]: Likewise. * gnu/packages/display-managers.scm (slim)[arguments]: Likewise. * gnu/packages/dns.scm (dnsmasq)[arguments]: Likewise. * gnu/packages/emacs.scm (geiser, emacs-wget, bbdb)[arguments]: Likewise. * gnu/packages/engineering.scm (pcb)[arguments]: Likewise. * gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Likewise. * gnu/packages/flashing-tools.scm (flashrom)[arguments]: Likewise. * gnu/packages/fltk.scm (fltk)[arguments]: Likewise. * gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Likewise. * gnu/packages/gd.scm (perl-gd)[arguments]: Likewise. * gnu/packages/gkrellm.scm (gkrellm)[arguments]: Likewise. * gnu/packages/glib.scm (glibmm)[arguments]: Likewise. * gnu/packages/gl.scm (glew)[arguments]: Likewise. * gnu/packages/gnome.scm (icon-naming-utils, orbit2, libbonobo, gnome-vfs, libgnome, libbonoboui, goffice-0.8, dconf)[arguments]: Likewise. * gnu/packages/gprolog.scm (gprolog)[arguments]: Likewise. * gnu/packages/gps.scm (gpscorrelate)[arguments]: Likewise. * gnu/packages/graphics.scm (agg)[arguments]: Likewise. * gnu/packages/gtk.scm (ganv, girara, gtksourceview-2, guile-present, python2-pycairo)[arguments]: Likewise. * gnu/packages/guile.scm (guile-1.8)[arguments]: Likewise. * gnu/packages/guile-wm.scm (guile-wm)[arguments]: Likewise. * gnu/packages/hugs.scm (hugs)[arguments]: Likewise. * gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal) [arguments]: Likewise. * gnu/packages/image-viewers.scm (feh, sxiv)[arguments]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[arguments]: Likewise. * gnu/packages/linux.scm (bridge-utils, iw, fuse, unionfs-fuse/static, lm-sensors, i2c-tools, xsensors, perf, mdadm, libaio, module-init-tools) [arguments]: Likewise. * gnu/packages/lisp.scm (ccl)[arguments]: Likewise. * gnu/packages/lout.scm (lout)[arguments]: Likewise. * gnu/packages/lua.scm (luajit)[arguments]: Likewise. * gnu/packages/machine-learning.scm (shogun)[arguments]: Likewise. * gnu/packages/mail.scm (exim)[arguments]: Likewise. * gnu/packages/man.scm (man-pages, txt2man)[arguments]: Likewise. * gnu/packages/maths.scm (lapack, superlu-dist, openlibm, openspecfun) [arguments]: Likewise. * gnu/packages/messaging.scm (bitlbee)[arguments]: Likewise. * gnu/packages/mp3.scm (libmad, id3lib, mp3info)[arguments]: Likewise. * gnu/packages/music.scm (solfege)[arguments]: Likewise. * gnu/packages/noweb.scm (noweb)[arguments]: Likewise. * gnu/packages/patchutils.scm (patchutils, quilt, colordiff)[arguments]: Likewise. * gnu/packages/pdf.scm (xpdf, zathura-cb, zathura-ps, zathura-djvu, zathura-pdf-poppler, zathura, podofo, fbida)[arguments]: Likewise. * gnu/packages/perl.scm (perl-file-list, perl-test-harness)[arguments]: Likewise. * gnu/packages/photo.scm (gphoto2)[arguments]: Likewise. * gnu/packages/popt.scm (popt)[arguments]: Likewise. * gnu/packages/pretty-print.scm (source-highlight, astyle)[arguments]: Likewise. * gnu/packages/pumpio.scm (pumpa)[arguments]: Likewise. * gnu/packages/python.scm (python-passlib, python-pycrypto, python2-empy, python-sqlalchemy, python-docopt)[arguments]: Likewise. * gnu/packages/rdf.scm (lrdf)[arguments]: Likewise. * gnu/packages/regex.scm (tre)[arguments]: Likewise. * gnu/packages/rrdtool.scm (rrdtool)[arguments]: Likewise. * gnu/packages/ruby.scm (ruby-2.1, ruby-1.8)[arguments]: Likewise. * gnu/packages/sawfish.scm (sawfish)[arguments]: Likewise. * gnu/packages/scheme.scm (racket)[arguments]: Likewise. * gnu/packages/sdl.scm (guile-sdl)[arguments]: Likewise. * gnu/packages/serveez.scm (serveez)[arguments]: Likewise. * gnu/packages/skribilo.scm (skribilo)[arguments]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[arguments]: Likewise. * gnu/packages/suckless.scm (dmenu, slock)[arguments]: Likewise. * gnu/packages/tcl.scm (expect)[arguments]: Likewise. * gnu/packages/telephony.scm (commoncpp)[arguments]: Likewise. * gnu/packages/textutils.scm (recode, libgtextutils)[arguments]: Likewise. * gnu/packages/time.scm (time)[arguments]: Likewise. * gnu/packages/tor.scm (privoxy)[arguments]: Likewise. * gnu/packages/uucp.scm (uucp)[arguments]: Likewise. * gnu/packages/video.scm (libdvdnav-4)[arguments]: Likewise. * gnu/packages/web-browsers.scm (lynx)[arguments]: Likewise. * gnu/packages/web.scm (tinyproxy)[arguments]: Likewise. * gnu/packages/wicd.scm (wicd)[arguments]: Likewise. * gnu/packages/wm.scm (bspwm)[arguments]: Likewise. * gnu/packages/xdisorg.scm (sxhkd, xcape)[arguments]: Likewise. * gnu/packages/xfce.scm (xfconf)[arguments]: Likewise. * gnu/packages/xfig.scm (transfig)[arguments]: Likewise. * gnu/packages/xorg.scm (imake)[arguments]: Likewise. Kei Kebreau2017-09-201-50/+50
| * | | | gnu: Add hdf-java.•••* gnu/packages/maths.scm (hdf-java): New variable. Thomas Danckaert2017-10-101-1/+120
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