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* gnu: python-graphviz: Update to 0.20.3.Sharlatan Hellseher2024-12-131-6/+13
| | | | | | | | * gnu/packages/graphviz.scm (python-graphviz): Update to 0.20.3. [arguments]<phases>: Remove 'prepare-chec phase. Add 'patch-pytest-options phase. Use custom 'check phase. Change-Id: I8ebd1277e9b53b3ad267f567c449e6efc01b0653
* gnu: build-system/pyproject: Add missing native-inputs.Nicolas Graves2024-12-131-1/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (python-ega-download-client) [native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/databases.scm (datasette)[native-inputs]: Add python-pip. * gnu/packages/django.scm (python-django-localflavor, python-django-contact-form)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/graphviz.scm (python-uqbar)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/jupyter.scm (python-jupyterlab-server)[native-inputs]: Add python-wheel. (python-nbstripout)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/machine-learning.scm (python-captum, python-linear-operator, python-gpytorch)[native-inputs]: Add python-setuptools. * gnu/packages/music.scm (abjad, abjad-ext-rmarkers, abjed-ext-nauert, python-mutagen)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/package-management.scm (python-conda-package-handling)[native-inputs]: Add python-setuptools and python-wheel. (conda)[native-inputs]: Add python-wheel. * gnu/packages/python-check.scm (python-pyinstrument, python-pytest-testmon, python-pytest-trio, python-nbval, python-pytest-toolbox)[native-inputs]: Add python-setuptools and python-wheel. (python-nptyping)[native-inputs]: Add python-setuptools. * gnu/packages/python-check.scm (python-dask-expr)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/python-web.scm (parfive, python-aioftp, python-hupper, python-sanic, python-mechanicalsoup, python-tinycss, python-aiostream, python-cbor2, gunicorn)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/python-xyz.scm (python-apprise, python-jaraco-classes, python-sparse, python-shtab, python-pyan3)[native-inputs]: Add python-setuptools. (python-jupytext, python-orderedmultidict, python-identify, python-nodeenv, python-cfgv, python-zarr, python-multipart, python-nbconvert, python-cram, python-immutables, python-numpydoc, python-cairosvg, python-unidecode, python-black, python-multidict, python-mpv-jsonipc, python-humanize, python-cmd2)[native-inputs]: Add python-setuptools and python-wheel. (python-partd, python-dask, python-zarr)[native-inputs]: Add python-wheel. (python-nbconvert)[propagated-inputs]: Add texlive-etoolbox. Remove duplicate textlive-jknapltx. (python-isort)[native-inputs]: Add python-pip. * gnu/packages/simulation.scm (python-fenics-dijitso)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/sphinx.scm (python-pydata-sphinx-theme, python-sphinx-autodoc-typehints)[native-inputs]: Add python-setuptools. * gnu/packages/syndication.scm (tuir)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/terminals.scm (python-halo)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/time.scm (python-arrow, python-dateutil) [native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/version-control.scm (pre-commit)[native-inputs]: Add python-setuptools and python-wheel. Remove input labels. * gnu/packages/virtualization.scm (python-qemu-qmp, python-transient)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/xorg.scm (python-xcffib)[native-inputs]: Add python-setuptools and python-wheel. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: Id61cf8cdc47bd4c2871c0a9c8e9a5bfd51157df0
* gnu: python-uqbar: Update to 0.6.9.Nicolas Graves2024-12-131-14/+5
| | | | | | | * gnu/packages/graphviz.scm (python-uqbar): Update to 0.6.9. Change-Id: Iee24cb1c66db162001c618d1f64a9e2406c1dacd Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: python-uqbar: Upgrade to python-team branch.Nicolas Graves2024-12-131-3/+15
| | | | | | | | | | * gnu/packages/graphviz.scm (python-uqbar): Upgrade to python-team branch's changes. [arguments]<#:test-flags>: Ignore failing tests. [propagated-inputs]: Replace python-sphinx by python-sphinx-5. Change-Id: I07122f953e806081d9134d39e16675eb0f839bbc Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: python-uqbar: Improve package style.Nicolas Graves2024-12-131-8/+2
| | | | | | | | | * gnu/packages/graphviz.scm (python-uqbar): Improve package style. [build-system]: Move to pyproject-build-system. [arguments]: Convert 'check phase replacement to <#:test-flags>. Change-Id: I536e60438e3f2d5592ab9cd34fe66104cfd117e2 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* build-system/pyproject: Use python-sans-pip-wrapper as default-python.Lars-Dominik Braun2024-12-131-1/+3
| | | | | | | | | | | Also adds python-setuptools and python-wheel to relevant packages, either to native-inputs or to propagated inputs if the pkg_resources Python module is loaded at runtime. * guix/build-system/pyproject.scm (default-python): Default to python-sans-pip-wrapper. Change-Id: I2d986c2225114f54459dd6bb360913106e52cdf4
* gnu: xdot: Update to 1.4.Artyom V. Poptsov2024-10-221-3/+4
| | | | | | | * gnu/packages/graphviz.scm (xdot): Update to 1.4. [native-inputs]: Add python-packaging. Change-Id: Ifc06ab8fddfd23d0273d134efec610750bf2a462
* gnu: xdot: Bugfix: Add the directory containing "dot" to the PATH.Artyom V. Poptsov2024-05-161-0/+3
| | | | | | | | | | | | | | | "xdot" would always fail to run when graphviz "dot" binary is not available directly in the user system. This patch fixes it by adding graphviz binaries from the inputs to the PATH environment variable in "xdot" wrapping script. Reported by Ada Stevenson <adanskana@gmail.com> in https://debbugs.gnu.org/cgi/bugreport.cgi?bug=70910 * gnu/packages/graphviz.scm (xdot) [arguments]: Add the "bin" directory from the graphviz input to the xdot wrapping. Change-Id: Iba4bbc37daf07407ad4c18b822956fbb730c0033 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: xdot: Update to 1.3.Artyom V. Poptsov2024-05-011-30/+64
| | | | | | | | | | | | | | | * gnu/packages/graphviz.scm (xdot): Update to 1.3. [source]: Download the sources from GitHub as the PyPI tarbal is missing some test files. [arguments]: Use Gexps. Add "start-xserver" and "set-test-environment" to setup test environment properly. Simplify "wrap" phase. Replace "check" phase to run "test.py". [native-inputs]: Add "gobject-introspection" and "xorg-server-for-tests". [inputs]: Add "bash-minimal", "mesa", "mesa-opencl", "python-numpy" and "vulkan-loader". Change-Id: I7a68e9f5c1b66a6539b83623a457e16edacff012 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-uqbar: Update to 0.5.9.Troy Figiel2024-01-071-9/+3
| | | | | | | | | * gnu/packages/graphviz.scm (python-uqbar): Update to 0.5.9. [source]: Add patch for Python 3.10 compatibility. [arguments]: Remove outdated patch phase. Change-Id: I81d83efd69bd07fe12790981c48a6e82297908f0 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Rationalize texlive-updmap.cfg and texlive-tiny inputs.Nicolas Goaziou2023-07-181-2/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | TEXLIVE-UPDMAP.CFG and TEXLIVE-TINY should only be used as native inputs. Also remove texlive packages already provided by them. * doc/build.scm (pdf-manual): * gnu/packages/algebra.scm (pari-gp): * gnu/packages/bioinformatics.scm (discrover): (phyml): (velvet): * gnu/packages/chemistry.scm (yaehmop): * gnu/packages/chez.scm (stex-bootstrap): (chez-web): (chez-sockets): * gnu/packages/cran.scm (r-prereg): * gnu/packages/docbook.scm (dblatex): * gnu/packages/emacs-xyz.scm (emacs-auctex): * gnu/packages/engineering.scm (fastcap): * gnu/packages/fsf.scm (book-faif): * gnu/packages/graphviz.scm (dot2tex): * gnu/packages/maths.scm (hypre): * gnu/packages/ocaml.scm (unison): (ocaml-bibtex2html): * gnu/packages/plotutils.scm (asymptote): * gnu/packages/python-xyz.scm (python-nbconvert): (python-pypandoc): * gnu/packages/radio.scm (gnuradio): (libosmo-dsp): * gnu/packages/statistics.scm (r-with-tests): * gnu/packages/tex.scm (texlive-makecmds): (texlive-innerscript): (teximpatient): (texlive-xkeyval): Remove texlive packages already provided by TEXLIVE-UPDMAP.CFG. Don't add TEXLIVE-TINY or TEXLIVE-UPDMAP.CFG as inputs.
* gnu: dot2tex: Fix failing tests.Nicolas Goaziou2023-07-181-14/+10
| | | | | | | | | | TeX Live packages needed to build tests are moved to native inputs because propagating them may not be a good thing. Use might already be using monolithic TeX Live, or would may have their TeX Live installation on another system. * gnu/packages/graphviz.scm (dot2tex)[native-inputs]: Add TeX Live packages necessary to build documents generated during tests. [propagated-inputs]: Remove them.
* gnu: Replace texlive-latex-base with texlive-latex-bin.Nicolas Goaziou2023-07-181-2/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Although `latex-base' is clearly defined on CTAN, it isn't a proper TeX Live package. Since we're trying to follow as closely as possible this TeX distribution, we replace the package with the closest one, which is `texlive-latex-bin'. As a consequence, the #:TEXLIVE-LATEX-BASE argument becomes #:TEXLIVE-LATEX-BIN?, emphasizing the fact that the meaningful values for it are booleans. * gnu/packages/graphviz.scm (dot2tex)[propagated-inputs]: Remove TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN. * gnu/packages/plotutils.scm (asymptote)[native-inputs]: Remove TEXLIVE-LATEX-BASE, TEXLIVE-GRAPHICS, TEXLIVE-L3BACKEND. Use TEXLIVE-UPDMAP.CFG. * gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Remove TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN. * gnu/packages/tex.scm (texlive-latex-base): Deprecate variable. (texlive-hyphen-complete): (texlive-tex): (texlive-latex): (texlive-docstrip): (texlive-unicode-data): (texlive-hyphen-base): (texlive-tex-ini-files): (texlive-metafont): (texlive-modes): (texlive-knuth-lib): (texlive-latex-fonts): (texlive-etex): (texlive-plain): (texlive-kpathsea): (texlive-latexconfig): (texlive-latex-bin): (texlive-l3kernel): (texlive-l3backend): (texlive-l3packages): (texlive-luatex): (texlive-luahbtex): (texlive-babel): (texlive-cyrillic): (texlive-pdftex): (texlive-cm)[arguments]: Replace #:TEXLIVE-LATEX-BASE with #:TEXLIVE-LATEX-BIN?. (texlive-lm): (texlive-lua-alt-getopt): (texlive-luaotfload): (texlive-graphics-def): (texlive-graphics-cfg): Set #:TEXLIVE-LATEX-BIN? to #F. (texlive-graphics): (texlive-lualibs): (texlive-firstaid): (texlive-atveryend)[arguments]: Set #:TEXLIVE-LATEX-BIN? to #F. [native-inputs]: Add TEXLIVE-DOCSTRIP, TEXLIVE-PDFTEX. (texlive-updmap.cfg): Remove TEXLIVE-CM, TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN. (texlive-atbegshi)[arguments]: Set #:TEXLIVE-LATEX-BIN? to #F. [native-inputs]: Add TEXLIVE-DOCSTRIP, TEXLIVE-PDFTEX. [propagated-inputs]: Remove TEXLIVE-IFTEX, TEXLIVE-INFWARERR and TEXLIVE-LTXCMDS. (texlive-everyshi)[arguments]: Build package with a temporary "latex.fmt" file. (texlive-cyrillic): Set #:TEXLIVE-LATEX-BIN? to #T. * guix/build-system/texlive.scm (default-texlive-latex-base): Rename to TEXLIVE-LATEX-BIN. (lower): Set default value for TEXLIVE-LATEX-BIN? to #TRUE. * gnu/packages/statistics.scm (r-with-tests): Remove TEXLIVE-LATEX-BASE and TEXLIVE-GRAPHICS. * doc/guix.texi (Build Systems): Document #:TEXLIVE-LATEX-BIN? argument. Remove reference to #:TEXLIVE-LATEX-BASE.
* gnu: texlive-latex-preview -> texlive-preview.Nicolas Goaziou2023-07-181-1/+1
| | | | | | | * gnu/packages/tex.scm (texlive-preview): New variable. (texlive-latex-preview): Deprecate variable. * gnu/packages/graphviz.scm (dot2tex)[propagated-inputs]: * gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Use new name.
* gnu: texlive-latex-xkeyval -> texlive-xkeyval.Nicolas Goaziou2023-07-181-3/+3
| | | | | | | | | | | | | | | | * gnu/packages/tex.scm (texlive-xkeyval): New variable. (texlive-latex-xkeyval): Deprecate variable. (texlive-bidi): (texlive-pstool): (texlive-polyglossia): (texlive-zref): (texlive-standalone): (texlive-todonotes): (texlive-adjustbox): (texlive-qrcode): (texlive-breakurl): * gnu/packages/graphviz.scm (dot2tex): * gnu/packages/statistics.scm (r-with-tests): Use new name.
* gnu: texlive-latex-geometry -> texlive-geometry.Nicolas Goaziou2023-07-181-1/+1
| | | | | | | | | | | | | * gnu/packages/tex.scm (texlive-geometry): New variable. (texlive-latex-geometry): Deprecate variable. (texlive-xindy): * gnu/packages/chemistry.scm (yaehmop): * gnu/packages/cran.scm (r-prereg): * gnu/packages/graphviz.scm (dot2tex): * gnu/packages/maths.scm (hypre): * gnu/packages/plotutils.scm (asymptote): * gnu/packages/python-xyz.scm (python-nbconvert): * gnu/packages/sphinx.scm (python-sphinx): Use new name.
* gnu: graphviz: Add "minimal" variant.Ludovic Courtès2023-05-241-1/+8
| | | | * gnu/packages/graphviz.scm (graphviz-minimal): New variable.
* gnu: graphviz: Remove version 2.38.Andreas Enge2023-04-261-48/+0
| | | | | | | This is a follow-up to commit 370cb92eaa089af19c08d9a7b4f5a96ac5b27716 . * gnu/packages/graphviz.scm: Drop imported modules. (graphviz-2.38): Remove package.
* gnu: xdot: Complete atk to at-spi2-core transition.Ludovic Courtès2023-04-191-1/+1
| | | | | | | This is a followup to c000352c27f511dfb5569bef09f9b774d6100117. * gnu/packages/graphviz.scm (xdot)[arguments]: In 'wrap' phase, change "atk" to "at-spi2-core".
* gnu: Replace all uses of atk by at-spi2-core.Josselin Poiret2023-03-311-1/+1
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/animation.scm (gnash) * gnu/packages/chromium.scm (ungoogled-chromium) * gnu/packages/crates-gtk.scm (rust-atk-sys-0.14, rust-atk-sys-0.10, rust-atk-0.14, rust-gtk-0.14) * gnu/packages/gimp.scm (gimp) * gnu/packages/gnome.scm (evince, glade3, clutter, totem, rhythmbox, mutter, ghex): * gnu/packages/graphviz.scm (xdot) * gnu/packages/gtk.scm (gtk+-2, gtk+, guile-gnome, atkmm) * gnu/packages/mate.scm (mate-applets, atril, mate-control-center, mate-calc, mate-utils, eom, pluma) * gnu/packages/messaging.scm (dino) * gnu/packages/qt.scm (qtwebengine-5) * gnu/packages/rust-apps.scm (alfis) * gnu/packages/vim.scm (vim-full) * gnu/packages/vnc.scm (remmina) * gnu/packages/web.scm (castor): Replace atk by at-spi2-core. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* Merge remote-tracking branch 'savannah/master' into core-updatesChristopher Baines2023-03-021-3/+3
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/local.mk gnu/packages/autotools.scm gnu/packages/cmake.scm gnu/packages/gnuzilla.scm gnu/packages/haskell.scm gnu/packages/pdf.scm gnu/packages/python-xyz.scm gnu/packages/samba.scm gnu/packages/tex.scm gnu/packages/tls.scm gnu/packages/wxwidgets.scm
| * gnu: Use HTTPS package home pages wherever possible.Tobias Geerinckx-Rice2023-02-191-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS. * gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise. * gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]: Likewise. * gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise. * gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise. * gnu/packages/astronomy.scm (casacore, sextractor, libnova) (xplanet)[home-page]: Likewise. * gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao) (freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms) (libmodplug, libxmp, xmp, sox, drc, gsm, gnaural) (streamripper)[home-page]: Likewise. * gnu/packages/authentication.scm (pamtester)[home-page]: Likewise. * gnu/packages/backup.scm (grsync)[home-page]: Likewise. * gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma) (r-plgem)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1) (bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard) (java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools) (snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip) (libsbml)[home-page]: Likewise. * gnu/packages/build-tools.scm (tup)[home-page]: Likewise. * gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools) (cd-discid)[home-page]: Likewise. * gnu/packages/check.scm (cunit, python-nose) (python-pyhamcrest)[home-page]: Likewise. * gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise. * gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise. * gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise. * gnu/packages/compression.scm (p7zip)[home-page]: Likewise. * gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial) (r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook) (r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags) (r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm) (r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet) (r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde) (r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels) (r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom) (r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat) (r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]: Likewise. * gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13) (rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20) (rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20) (rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20) (rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise. * gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise. * gnu/packages/curl.scm (curlpp)[home-page]: Likewise. * gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger) (libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers) (soci)[home-page]: Likewise. * gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise. * gnu/packages/debug.scm (remake)[home-page]: Likewise. * gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise. * gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise. * gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise. * gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise. * gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise. * gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise. * gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise. * gnu/packages/electronics.scm (xoscope)[home-page]: Likewise. * gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu) (emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel) (emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc) (emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap) (emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+) (emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise. * gnu/packages/embedded.scm (sdcc)[home-page]: Likewise. * gnu/packages/engineering.scm (asco, libngspice, libspnav) (openctm)[home-page]: Likewise. * gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise. * gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]: Likewise. * gnu/packages/finance.scm (gbonds)[home-page]: Likewise. * gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]: Likewise. * gnu/packages/fltk.scm (ntk)[home-page]: Likewise. * gnu/packages/fonts.scm (font-terminus, font-tex-gyre) (font-comic-neue)[home-page]: Likewise. * gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]: Likewise. * gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave) (python-myhdl)[home-page]: Likewise. * gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise. * gnu/packages/ftp.scm (weex)[home-page]: Likewise. * gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc) (eureka, plib)[home-page]: Likewise. * gnu/packages/games.scm (abe, alex4, armagetronad, barony) (foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally) (cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki) (quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks) (flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise. * gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise. * gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise. * gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish) (workrave)[home-page]: Likewise. * gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise. * gnu/packages/graph.scm (mscgen)[home-page]: Likewise. * gnu/packages/graphics.scm (assimp, alembic, ctl, agg) (opencsg)[home-page]: Likewise. * gnu/packages/graphviz.scm (gts)[home-page]: Likewise. * gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise. * gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise. * gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-http-client-restricted) (ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg) (ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats) (ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints) (ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon) (ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards) (ghc-template-haskell, ghc-boot-th, ghc-binary-orphans) (ghc-postgresql-simple)[home-page]: Likewise. * gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise. * gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise. * gnu/packages/image-processing.scm (mia)[home-page]: Likewise. * gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr) (qiv)[home-page]: Likewise. * gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib) (sng, mtpaint)[home-page]: Likewise. * gnu/packages/java-xml.scm (java-simple-xml, java-jaxp) (java-apache-xml-commons-resolver)[home-page]: Likewise. * gnu/packages/java.scm (java-cisd-base, java-cisd-args4j) (java-hamcrest-core, java-jsr305, java-eclipse-osgi) (java-eclipse-equinox-common, java-eclipse-core-jobs) (java-eclipse-equinox-registry, java-eclipse-equinox-app) (java-eclipse-equinox-preferences, java-eclipse-core-contenttype) (java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq) (java-cdi-api)[home-page]: Likewise. * gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise. * gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]: Likewise. * gnu/packages/kde-internet.scm (kget)[home-page]: Likewise. * gnu/packages/kde-systemtools.scm (dolphin-plugins) (konsole)[home-page]: Likewise. * gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise. * gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise. * gnu/packages/lego.scm (nqc)[home-page]: Likewise. * gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise. * gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise. * gnu/packages/libffi.scm (libffi)[home-page]: Likewise. * gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]: Likewise. * gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise. * gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools) (kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise. * gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser) (sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore) (sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell) (sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise. * gnu/packages/lisp.scm (lush2)[home-page]: Likewise. * gnu/packages/logging.scm (log4cpp)[home-page]: Likewise. * gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise. * gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]: Likewise. * gnu/packages/mail.scm (muchsync, procmail, sendmail) (opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise. * gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise. * gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh) (metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3) (frama-c)[home-page]: Likewise. * gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]: Likewise. * gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise. * gnu/packages/monitoring.scm (python-whisper, python-carbon) (hostscope)[home-page]: Likewise. * gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321) (lame)[home-page]: Likewise. * gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise. * gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol) (portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot) (schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2) (shiru-lv2)[home-page]: Likewise. * gnu/packages/ncurses.scm (stfl)[home-page]: Likewise. * gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird) (tunctl, traceroute)[home-page]: Likewise. * gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise. * gnu/packages/ntp.scm (openntpd)[home-page]: Likewise. * gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib) (ocaml-graph, cubicle)[home-page]: Likewise. * gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise. * gnu/packages/package-management.scm (xstow, modules)[home-page]: Likewise. * gnu/packages/parallel.scm (xjobs)[home-page]: Likewise. * gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]: Likewise. * gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]: Likewise. * gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]: Likewise. * gnu/packages/plan9.scm (drawterm)[home-page]: Likewise. * gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]: Likewise. * gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise. * gnu/packages/profiling.scm (otf2)[home-page]: Likewise. * gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise. * gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise. * gnu/packages/python-web.scm (python-cssutils) (python-translationstring)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml) (python-docutils, python-pexpect, python-importlib-resources) (python-simplegeneric, python-urwid, python-xlrd, python-xlwt) (python-pyasn1, python-pythondialog, python-tftpy, python-random2) (python-arcp, python-pyopengl, python-sortedcollections) (python-sortedcontainers, python-yapsy, python-pydispatcher) (python-posix-ipc)[home-page]: Likewise. * gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise. * gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise. * gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise. * gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise. * gnu/packages/regex.scm (tre)[home-page]: Likewise. * gnu/packages/rsync.scm (librsync)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox) (ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise. * gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise. * gnu/packages/screen.scm (dtach)[home-page]: Likewise. * gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise. * gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise. * gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise. * gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise. * gnu/packages/speech.scm (espeak)[home-page]: Likewise. * gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise. * gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice) (r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable) (python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm) (r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]: Likewise. * gnu/packages/swig.scm (swig)[home-page]: Likewise. * gnu/packages/task-management.scm (wtime)[home-page]: Likewise. * gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise. * gnu/packages/terminals.scm (libtermkey, mlterm, libvterm) (libvterm)[home-page]: Likewise. * gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs) (texlive-csplain, biber, texmaker)[home-page]: Likewise. * gnu/packages/text-editors.scm (joe)[home-page]: Likewise. * gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise. * gnu/packages/tv.scm (tvtime)[home-page]: Likewise. * gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise. * gnu/packages/upnp.scm (libupnp)[home-page]: Likewise. * gnu/packages/version-control.scm (cvs)[home-page]: Likewise. * gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib) (liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl) (dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise. * gnu/packages/virtualization.scm (bochs)[home-page]: Likewise. * gnu/packages/w3m.scm (w3m)[home-page]: Likewise. * gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi) (tidy-html, htmlcxx)[home-page]: Likewise. * gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise. * gnu/packages/wv.scm (wv)[home-page]: Likewise. * gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise. * gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise. * gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c) (opensp)[home-page]: Likewise. * gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise.
| * gnu: python-pygraphviz: Update to 1.10.Philippe SWARTVAGHER2023-02-201-2/+2
| | | | | | | | | | | | * gnu/packages/graphviz.scm (python-pygraphviz): Update to 1.10. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* | gnu: python-graphviz: Add native input.Andreas Enge2023-02-211-0/+1
| | | | | | | | | | | | | | * gnu/packages/graphviz.scm (python-graphviz)[native-inputs]: Add python-mock. This partially reverts commit 3d388fe3d0475f2e991ae061cc1364529a97af42
* | gnu: texlive-fancyhdr: Use over deprecated texlive-latex-fancyhdr.Efraim Flashner2023-01-301-2/+2
| | | | | | | | | | * gnu/packages/tex.scm (texlive-apa6)[propagated-inputs]: Replace texlive-latex-fancyhdr with texlive-fancyhdr.
* | gnu: texlive-graphics: Use over deprecated texlive-latex-graphics.Efraim Flashner2023-01-301-1/+1
| | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (phyml)[native-inputs], * gnu/packages/chemistry.scm (yaehmop)[native-inputs], * gnu/packages/graphviz.scm (dot2tex)[propagated-inputs], * gnu/packages/maths.scm (cddlib)[native-inputs], * gnu/packages/statistics.scm (r-with-tests)[native-inputs], * gnu/packages/tex.scm (texlive-apa6)[propagated-inputs]: Replace texlive-latex-graphics with texlive-graphics.
* | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2023-01-301-12/+11
|\| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: doc/guix.texi gnu/local.mk gnu/packages/admin.scm gnu/packages/base.scm gnu/packages/chromium.scm gnu/packages/compression.scm gnu/packages/databases.scm gnu/packages/diffoscope.scm gnu/packages/freedesktop.scm gnu/packages/gnome.scm gnu/packages/gnupg.scm gnu/packages/guile.scm gnu/packages/inkscape.scm gnu/packages/llvm.scm gnu/packages/openldap.scm gnu/packages/pciutils.scm gnu/packages/ruby.scm gnu/packages/samba.scm gnu/packages/sqlite.scm gnu/packages/statistics.scm gnu/packages/syndication.scm gnu/packages/tex.scm gnu/packages/tls.scm gnu/packages/version-control.scm gnu/packages/xml.scm guix/build-system/copy.scm guix/scripts/home.scm
| * gnu: python-graphviz: Update to 0.20.1.Ricardo Wurmus2022-12-131-12/+11
| | | | | | | | | | | | | | * gnu/packages/graphviz.scm (python-graphviz): Update to 0.20.1. [build-system]: Use pyproject-build-system. [arguments]: Remove custom "check" phase; add "prepare-check" phase. [native-inputs]: Remove python-mock.
* | gnu: graphviz: Update to 7.0.1 and remove input labels.Maxim Cournoyer2022-11-201-6/+7
| | | | | | | | | | * gnu/packages/graphviz.scm (graphviz): Update to 7.0.1. [inputs]: Remove labels.
* | Merge branch 'staging' into core-updatesMarius Bakke2022-08-271-0/+2
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| * gnu: graphviz: Add release-monitoring-url.Marius Bakke2022-08-131-0/+2
| | | | | | | | * gnu/packages/graphviz.scm (graphviz)[properties]: New field.
* | gnu: graphviz: Update to 5.0.0.Marius Bakke2022-08-121-10/+3
| | | | | | | | | | * gnu/packages/graphviz.scm (graphviz): Update to 5.0.0. [arguments]: Remove obsolete phase.
* | gnu: graphviz: Remove input labels.Marius Bakke2022-08-121-13/+13
|/ | | | * gnu/packages/graphviz.scm (graphviz)[inputs]: Remove labels.
* gnu: xdot: Build with librsvg-for-system.Denis 'GNUtoo' Carikli2022-08-011-1/+2
| | | | | | | * gnu/packages/graphviz.scm (xdot)[inputs]: Replace librsvg with librsvg-for-system. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Remove python2-graphviz.Maxim Cournoyer2022-05-311-3/+0
| | | | * gnu/packages/graphviz.scm (python2-graphviz): Delete variable.
* gnu: dot2tex: Update to 2.11.3.Maxim Cournoyer2022-05-311-4/+26
| | | | | | | | | | | | * gnu/packages/graphviz.scm (dot2tex): Update to 2.11.3. [arguments]: Remove python argument. [phases]: New argument. [native-inputs]: New field. [inputs]: Move texlive-latex-preview to... [propagated-inputs]: ... here. Replace python2-pyparsing with python-parsing. Add texlive-bin, texlive-amsmath, texlive-latex-geometry, texlive-latex-graphics, texlive-latex-base, texlive-latex-xkeyval, texlive-pgf, texlive-pstricks and texlive-xcolor.
* gnu: Remove python2-pydot.Maxim Cournoyer2022-05-311-3/+0
| | | | * gnu/packages/graphviz.scm (python2-pydot): Delete variable.
* gnu: python-pydot: Update to 1.4.2.Marius Bakke2022-01-181-5/+3
| | | | | | | * gnu/packages/graphviz.scm (python-pydot): Update to 1.4.2. [source](patches): Remove. * gnu/packages/patches/python-pydot-regression-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu: python-pydot: Build with old pyparsing.Marius Bakke2022-01-181-2/+4
| | | | | * gnu/packages/graphviz.scm (python-pydot)[propagated-inputs]: Change from PYTHON-PYPARSING to PYTHON-PYPARSING-2.4.7.
* gnu: xdot: Build with harfbuzz.terramorpha2021-12-151-1/+4
| | | | | | | | | This fixes a crash when launching xdot. * gnu/packages/graphviz.scm (xdot)[inputs]: Add harfbuzz. [arguments]: Add harfbuzz to the GI_TYPELIB_PATH wrapper in the 'wrap' phase. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Simplify package inputs.Ludovic Courtès2021-12-131-48/+39
| | | | | | | | This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
* Merge branch 'master' into core-updates-frozenLudovic Courtès2021-12-131-0/+43
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| * gnu: Add gprof2dot.Giacomo Leidi via Guix-patches via2021-12-101-0/+43
| | | | | | | | | | | | * gnu/packages/graphviz.scm (gprof2dot): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* | gnu: gtk: Replace gdk-pixbuf+svg by librsvg.Maxim Cournoyer2021-11-111-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | With the addition of a profile hook for computing the gdk-pixbuf loaders cache file, there is no longer a need for gdk-pixbuf+svg, and librsvg can propagate gdk-pixbuf without fear, so replace the former for the latter. The replacement was automated with the following command: $ git grep -l ',gdk-pixbuf+svg)' \ | xargs sed 's/(".*" ,gdk-pixbuf+svg)/("librsvg" ,librsvg)/' -i * gnu/packages/gtk.scm (gdk-pixbuf+svg): Delete package. (gtk+-2)[propagated-inputs]: Replace gdk-pixbuf+svg with librsvg. (gtk+)[propagated-inputs]: Likewise. * gnu/packages/gnome.scm (gdk-pixbuf+svg): Add deprecated package.
* | gnu: graphviz: Update to 2.49.0.Maxim Cournoyer2021-11-111-2/+2
| | | | | | | | * gnu/packages/graphviz.scm (graphviz): Update to 2.49.0.
* | gnu: Move a few Python packages to (gnu packages python-build).Maxim Cournoyer2021-11-111-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | This is in prevision of updating python-pypa-build, which now requires python-packaging and adding python-tomli, which requires python-six. * gnu/packages/python-xyz.scm (python-six) (python-six-bootstrap, python2-six-bootstrap) (python-pyparsing, python2-pyparsing, python-pyparsing-2.4.7) (python-packaging-bootstrap, python2-packaging-bootstrap): Move packages to... * gnu/packages/python-build.scm: ... here. Update python-parsing to latest. * gnu/packages/python-xyz.scm (python-six, python-packaging): Adjust to inherit from their bootstrap versions.
* | Merge remote-tracking branch 'origin/master' into core-updates-frozen.Mathieu Othacehe2021-10-121-4/+4
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| * gnu: python-uqbar: Update to 0.5.6.jgart2021-10-041-4/+4
| | | | | | | | | | | | | | * gnu/packages/graphviz.scm (python-uqbar): Update to 0.5.6. [arguments]: Update setup.py version requirements. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* | Merge branch 'master' into core-updates-frozenMarius Bakke2021-07-291-1/+1
|\| | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/packages/bioinformatics.scm gnu/packages/cmake.scm gnu/packages/curl.scm gnu/packages/emacs-xyz.scm gnu/packages/gpodder.scm gnu/packages/music.scm gnu/packages/patches/glibc-bootstrap-system.patch gnu/packages/python-xyz.scm gnu/packages/shells.scm gnu/packages/statistics.scm
| * gnu: graphviz: Use HTTPS home page.Marius Bakke2021-07-231-1/+1
| | | | | | | | * gnu/packages/graphviz.scm (graphviz)[home-page]: Use HTTPS.
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