| Commit message (Expand) | Author | Age | Files | Lines | ||
|---|---|---|---|---|---|---|
| ... | ||||||
| * | gnu: ngs-sdk: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (ngs-sdk)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-08 | 1 | -10/+9 | |
| * | gnu: ncbi-vdb: Use INVOKE and end phases on #T.•••* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use INVOKE and unconditionally end phases with #T. | Ricardo Wurmus | 2018-11-08 | 1 | -3/+3 | |
| * | gnu: ncbi-vdb: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (ncbi-vdb)[source]: Fetch from git. [arguments]: Add phase to make checkout writable. | Ricardo Wurmus | 2018-11-08 | 1 | -10/+11 | |
| * | gnu: tadbit: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (tadbit)[source]: Fetch from git. [version]: Use "2.0.0" instead of "2.0". | Ricardo Wurmus | 2018-11-08 | 1 | -6/+7 | |
| * | gnu: filevercmp: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (filevercmp)[source]: Fetch from git. [arguments]: Add #T to the end of the install phase. | Ricardo Wurmus | 2018-11-07 | 1 | -7/+10 | |
| * | gnu: ritornello: Update to 2.0.1.•••* gnu/packages/bioinformatics.scm (ritornello): Update to 2.0.1. [arguments]: Adjust file patching. | Ricardo Wurmus | 2018-11-07 | 1 | -3/+3 | |
| * | gnu: ritornello: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (ritornello)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: snap-aligner: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (snap-aligner)[source]: Fetch from git. [arguments]: Use INVOKE. | Ricardo Wurmus | 2018-11-07 | 1 | -7/+7 | |
| * | gnu: sortmerna: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (sortmerna)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: vsearch: Fetch source from git.•••* gnu/packages/bioinformatics.scm (vsearch)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: preseq: Update to 2.0.3.•••* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.3. | Ricardo Wurmus | 2018-11-07 | 1 | -7/+6 | |
| * | gnu: preseq: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (preseq)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -5/+6 | |
| * | gnu: seqtk: Update to 1.3.•••* gnu/packages/bioinformatics.scm (seqtk): Update to 1.3. [source]: Remove outdated snippet. [arguments]: Use INVOKE and return #T unconditionally. | Ricardo Wurmus | 2018-11-07 | 1 | -12/+5 | |
| * | gnu: seqtk: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (seqtk)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -7/+7 | |
| * | gnu: raxml: Update to 8.2.12.•••* gnu/packages/bioinformatics.scm (raxml): Update to 8.2.12. | Ricardo Wurmus | 2018-11-07 | 1 | -2/+2 | |
| * | gnu: python2-biom-format: Fix build.•••This is a follow-up to commit 239716fb0ba0a7cd81f9d59dcf5a2261b8efe4fa. * gnu/packages/bioinformatics.scm (python2-biom-format)[arguments]: Modify phases of base package. | Ricardo Wurmus | 2018-11-07 | 1 | -9/+9 | |
| * | gnu: raxml: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (raxml)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -7/+6 | |
| * | gnu: pyicoteo: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (pyicoteo)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -5/+6 | |
| * | gnu: sra-tools: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (sra-tools)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: libgff: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (libgff)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: kentutils: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (kentutils)[source]: Fetch from git. [arguments]: Add phase "fix-permissions". | Ricardo Wurmus | 2018-11-07 | 1 | -5/+8 | |
| * | gnu: r-seqgl: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (r-seqgl)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -5/+6 | |
| * | gnu: pplacer: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (pplacer)[source]: Fetch from git. [arguments]: Make files writable; use INVOKE. | Ricardo Wurmus | 2018-11-07 | 1 | -7/+9 | |
| * | gnu: minced: Update to 0.3.2.•••* gnu/packages/bioinformatics.scm (minced): Update to 0.3.2. | Ricardo Wurmus | 2018-11-07 | 1 | -2/+2 | |
| * | gnu: minced: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (minced)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: metabat: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (metabat)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -5/+6 | |
| * | gnu: mash: Update to 2.1.•••* gnu/packages/bioinformatics.scm (mash): Update to 2.1. | Ricardo Wurmus | 2018-11-07 | 1 | -2/+2 | |
| * | gnu: mash: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (mash)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: kaiju: Update to 1.6.3.•••* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.3. | Ricardo Wurmus | 2018-11-07 | 1 | -2/+2 | |
| * | gnu: kaiju: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (kaiju)[source]: Fetch from git. [arguments]: Remove redundant installation step. | Ricardo Wurmus | 2018-11-07 | 1 | -8/+7 | |
| * | gnu: idr: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (idr)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: java-htsjdk: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (java-htsjdk)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: hisat2: Use versioned source URL.•••* gnu/packages/bioinformatics.scm (hisat2)[source]: Use versioned URL. | Ricardo Wurmus | 2018-11-07 | 1 | -8/+3 | |
| * | gnu: grit: Update to 2.0.5.•••* gnu/packages/bioinformatics.scm (grit): Update to 2.0.5. [arguments]: Simplify. | Ricardo Wurmus | 2018-11-07 | 1 | -9/+3 | |
| * | gnu: grit: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (grit)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: gemma: Update to 0.98.•••* gnu/local.mk (dist_patch_DATA): Remove patch. * gnu/packages/patches/gemma-intel-compat.patch: Remove file. * gnu/packages/bioinformatics.scm (gemma): Update to 0.98. [source]: Remove patch. [inputs]: Add eigen, gfortran:lib, and openblas. [arguments]: Add phase "find-eigen". | Ricardo Wurmus | 2018-11-07 | 1 | -4/+15 | |
| * | gnu: gemma: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (gemma)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -5/+6 | |
| * | gnu: fxtract: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (fxtract)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -8/+6 | |
| * | gnu: ribodiff: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (ribodiff)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -5/+6 | |
| * | gnu: python-biom-format: Update to 2.1.7.•••* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.7. [arguments]: Add phases "use-cython", "disable-broken-test", and "make-files-writable". [propagated-inputs]: Add python-flake8. [native-inputs]: Add python-cython, python-pytest, and python-pytest-cov. | Ricardo Wurmus | 2018-11-07 | 1 | -3/+26 | |
| * | gnu: python-biom-format: Fetch source from git.•••* gnu/packages/bioinformatics.scm (python-biom-format)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -29/+30 | |
| * | gnu: bioawk: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (bioawk)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -13/+15 | |
| * | gnu: bedtools-2.18: Fetch sources from stable URL.•••* gnu/packages/bioinformatics.scm (bedtools-2.18)[source]: Use stable release tarball instead of generated tag tarball. | Ricardo Wurmus | 2018-11-07 | 1 | -3/+3 | |
| * | gnu: bamtools: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (bamtools)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: ngless: Install links to required tools.•••* gnu/packages/bioinformatics.scm (ngless)[arguments]: Install links to tools. [inputs]: Add prodigal, bwa, samtools, and minimap2. | Ricardo Wurmus | 2018-11-07 | 1 | -2/+23 | |
| * | gnu: prodigal: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (prodigal)[source]: Fetch from git. | Ricardo Wurmus | 2018-11-07 | 1 | -6/+6 | |
| * | gnu: r-mzr: Update to 2.16.0.•••* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.0. [inputs]: Remove netcdf. [propagated-inputs]: Add r-ncdf4. | Ricardo Wurmus | 2018-11-07 | 1 | -3/+3 | |
| * | gnu: r-rhdf5lib: Update to 1.4.0.•••* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.0. [source]: Add snippet to remove bundled binaries. [arguments]: Replace references to hdf5 with references to hdf5-1.10. [native-inputs]: Likewise. [propagated-inputs]: Replace hdf5 with hdf5-1.10. | Ricardo Wurmus | 2018-11-07 | 1 | -5/+11 | |
| * | gnu: r-hdf5array: Update to 1.10.0.•••* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.0. | Ricardo Wurmus | 2018-11-07 | 1 | -2/+2 | |
| * | gnu: r-rhdf5: Update to 2.26.0.•••* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.26.0. | Ricardo Wurmus | 2018-11-07 | 1 | -2/+2 | |
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