| Commit message (Expand) | Author | Age | Files | Lines |
|---|
| * | Merge branch 'master' into core-updates | Mark H Weaver | 2018-03-20 | 1 | -5/+6 |
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| | * | gnu: pigx-bsseq: Update to 0.0.8.•••* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8.
| Ricardo Wurmus | 2018-03-20 | 1 | -2/+2 |
| | * | gnu: pigx-rnaseq: Update to 0.0.3.•••* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3.
[inputs]: Add gzip.
| Ricardo Wurmus | 2018-03-20 | 1 | -3/+4 |
| * | | Merge branch 'master' into core-updates | Mark H Weaver | 2018-03-20 | 1 | -21/+39 |
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| | * | gnu: pigx-bsseq: Update to 0.0.7.•••* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7.
[inputs]: Add coreutils, sed, and grep.
| Ricardo Wurmus | 2018-03-19 | 1 | -3/+6 |
| | * | gnu: bismark: Fix references to gunzip.•••* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to
gunzip executable.
[inputs]: Add gzip.
| Ricardo Wurmus | 2018-03-19 | 1 | -1/+10 |
| | * | gnu: pigx-scrnaseq: Update to 0.0.3.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3.
[inputs]: Add coreutils and perl.
| Ricardo Wurmus | 2018-03-19 | 1 | -3/+5 |
| | * | gnu: pigx: Update to 0.0.2.•••* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2.
| Ricardo Wurmus | 2018-03-19 | 1 | -2/+2 |
| | * | gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1.•••* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace
ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
| Ricardo Wurmus | 2018-03-19 | 1 | -1/+1 |
| | * | gnu: pigx-chipseq: Update to 0.0.8.•••* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8.
[inputs]: Add python-magic, python-xlrd, and trim-galore.
[arguments]: Disable tests.
| Ricardo Wurmus | 2018-03-19 | 1 | -3/+7 |
| | * | gnu: pigx-scrnaseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
| Ricardo Wurmus | 2018-03-19 | 1 | -2/+2 |
| | * | gnu: pigx-bsseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
| Ricardo Wurmus | 2018-03-19 | 1 | -2/+2 |
| | * | gnu: pigx-chipseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
| Ricardo Wurmus | 2018-03-19 | 1 | -2/+2 |
| | * | gnu: pigx-rnaseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
| Ricardo Wurmus | 2018-03-19 | 1 | -2/+2 |
| * | | Merge branch 'master' into core-updates | Mark H Weaver | 2018-03-17 | 1 | -0/+152 |
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| | * | gnu: Add pigx.•••* gnu/packages/bioinformatics.scm (pigx): New variable.
| Ricardo Wurmus | 2018-03-16 | 1 | -0/+36 |
| | * | gnu: pigx-rnaseq: Disable memory hungry test.•••* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase to
disable a memory hungry test.
| Ricardo Wurmus | 2018-03-16 | 1 | -0/+7 |
| | * | gnu: Add pigx-scrnaseq.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq): New variable.
| Ricardo Wurmus | 2018-03-16 | 1 | -0/+77 |
| | * | gnu: kentutils: Build with mariadb.•••* gnu/packages/bioinformatics.scm (kentutils)[inputs]: Replace mysql with
mariadb.
| Ricardo Wurmus | 2018-03-16 | 1 | -1/+1 |
| | * | gnu: Add Diversitree.•••* gnu/packages/bioinformatics.scm (r-diversitree): New variable.
| Leo Famulari | 2018-03-15 | 1 | -0/+32 |
| * | | gnu: All snippets report errors using exceptions, else return #t.•••* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
gnu/packages/backup.scm, gnu/packages/base.scm,
gnu/packages/bioinformatics.scm, gnu/packages/cdrom.scm,
gnu/packages/chez.scm, gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/cross-base.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm,
gnu/packages/databases.scm, gnu/packages/dns.scm, gnu/packages/emacs.scm,
gnu/packages/emulators.scm, gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm, gnu/packages/fpga.scm,
gnu/packages/freedesktop.scm, gnu/packages/ftp.scm, gnu/packages/games.scm,
gnu/packages/gcc.scm, gnu/packages/geo.scm, gnu/packages/ghostscript.scm,
gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm, gnu/packages/graphics.scm, gnu/packages/gtk.scm,
gnu/packages/guile.scm, gnu/packages/irc.scm, gnu/packages/java.scm,
gnu/packages/kerberos.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm,
gnu/packages/lxde.scm, gnu/packages/machine-learning.scm,
gnu/packages/mail.scm, gnu/packages/maths.scm, gnu/packages/messaging.scm,
gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/music.scm,
gnu/packages/netpbm.scm, gnu/packages/networking.scm, gnu/packages/node.scm,
gnu/packages/nvi.scm, gnu/packages/ocaml.scm, gnu/packages/pdf.scm,
gnu/packages/perl.scm, gnu/packages/php.scm, gnu/packages/plotutils.scm,
gnu/packages/pretty-print.scm, gnu/packages/profiling.scm,
gnu/packages/pulseaudio.scm, gnu/packages/python-crypto.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/robotics.scm,
gnu/packages/sawfish.scm, gnu/packages/scanner.scm, gnu/packages/scheme.scm,
gnu/packages/scribus.scm, gnu/packages/sdl.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/slang.scm, gnu/packages/smalltalk.scm, gnu/packages/ssh.scm,
gnu/packages/sync.scm, gnu/packages/syncthing.scm, gnu/packages/tbb.scm,
gnu/packages/terminals.scm, gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm, gnu/packages/textutils.scm,
gnu/packages/tls.scm, gnu/packages/unrtf.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm:
In all snippets, report errors using exceptions, or else return #t.
| Mark H Weaver | 2018-03-16 | 1 | -36/+52 |
| * | | gnu: kentutils: Build with mariadb.•••* gnu/packages/bioinformatics.scm (kentutils)[inputs]: Replace mysql with
mariadb.
| Ricardo Wurmus | 2018-03-16 | 1 | -1/+1 |
| * | | Merge branch 'master' into core-updates | Ricardo Wurmus | 2018-03-14 | 1 | -82/+1051 |
| |\| |
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| | * | gnu: Add pigx-bsseq.•••* gnu/packages/bioinformatics.scm (pigx-bsseq): New variable.
| Ricardo Wurmus | 2018-03-11 | 1 | -0/+64 |
| | * | gnu: Add pigx-chipseq.•••* gnu/packages/bioinformatics.scm (pigx-chipseq): New variable.
| Ricardo Wurmus | 2018-03-11 | 1 | -0/+66 |
| | * | gnu: r-rhdf5lib: Make build reproducible.•••* gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp
and host system kernel version.
| Ricardo Wurmus | 2018-03-09 | 1 | -0/+10 |
| | * | gnu: Add r-phangorn.•••* gnu/packages/bioinformatics.scm (r-phangorn): New variable.
| Ricardo Wurmus | 2018-03-08 | 1 | -0/+28 |
| | * | gnu: r-ape: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-ape): Move from here...
* gnu/packages/cran.scm (r-ape): ...to here.
| Ricardo Wurmus | 2018-03-08 | 1 | -26/+0 |
| | * | gnu: r-dropbead: Update to 0-2.d746c6f.•••* gnu/packages/bioinformatics.scm (r-dropbead): Update to 0-2.d746c6f.
| Ricardo Wurmus | 2018-03-08 | 1 | -3/+3 |
| | * | gnu: Add pigx-rnaseq.•••* gnu/packages/bioinformatics.scm (pigx-rnaseq): New variable.
| Ricardo Wurmus | 2018-03-07 | 1 | -0/+67 |
| | * | gnu: samtools: Update to 1.7.•••* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
| Ricardo Wurmus | 2018-03-06 | 1 | -2/+2 |
| | * | gnu: htslib: Update to 1.7.•••* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
| Ricardo Wurmus | 2018-03-06 | 1 | -11/+2 |
| | * | gnu: r-rhdf5: Make build reproducible.•••* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
| Ricardo Wurmus | 2018-03-06 | 1 | -0/+10 |
| | * | gnu: piranha: Declare a source file-name.•••* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source
file-name.
| Efraim Flashner | 2018-03-04 | 1 | -0/+1 |
| | * | gnu: libdivsufsort: Declare a source file-name.•••* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a
source file-name.
| Efraim Flashner | 2018-03-04 | 1 | -0/+1 |
| | * | gnu: seek: Declare a source file-name.•••* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source
file-name.
| Efraim Flashner | 2018-03-04 | 1 | -0/+1 |
| | * | gnu: r-dropbead: Declare a source file-name.•••* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source
file-name.
| Efraim Flashner | 2018-03-04 | 1 | -0/+1 |
| | * | gnu: Add dropseq-tools.•••* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+137 |
| | * | gnu: Add java-picard-2.10.3.•••* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+84 |
| | * | gnu: Add java-htsjdk-2.10.1.•••* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+27 |
| | * | gnu: Add java-htsjdk-latest.•••* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+43 |
| | * | gnu: Add java-biojava-alignment-4.0.•••* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+44 |
| | * | gnu: Add java-biojava-phylo-4.0.•••* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+36 |
| | * | gnu: Add java-biojava-core-4.0.•••* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+14 |
| | * | gnu: Add java-biojava-alignment.•••* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+44 |
| | * | gnu: Add java-biojava-phylo.•••* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+36 |
| | * | gnu: Add java-forester-1.005.•••* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+95 |
| | * | gnu: Add java-forester.•••* gnu/packages/bioinformatics.scm (java-forester): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+76 |
| | * | gnu: Add java-biojava-core.•••* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+56 |
| | * | gnu: Add fastqc.•••* gnu/packages/bioinformatics.scm (fastqc): New variable.
| Ricardo Wurmus | 2018-03-03 | 1 | -0/+79 |
