summaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
Commit message (Expand)AuthorAgeFilesLines
* gnu: pigx-bsseq: Update to 0.0.8.•••* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8. Ricardo Wurmus2018-03-201-2/+2
* gnu: pigx-rnaseq: Update to 0.0.3.•••* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3. [inputs]: Add gzip. Ricardo Wurmus2018-03-201-3/+4
* gnu: pigx-bsseq: Update to 0.0.7.•••* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7. [inputs]: Add coreutils, sed, and grep. Ricardo Wurmus2018-03-191-3/+6
* gnu: bismark: Fix references to gunzip.•••* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to gunzip executable. [inputs]: Add gzip. Ricardo Wurmus2018-03-191-1/+10
* gnu: pigx-scrnaseq: Update to 0.0.3.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3. [inputs]: Add coreutils and perl. Ricardo Wurmus2018-03-191-3/+5
* gnu: pigx: Update to 0.0.2.•••* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2. Ricardo Wurmus2018-03-191-2/+2
* gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1.•••* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus2018-03-191-1/+1
* gnu: pigx-chipseq: Update to 0.0.8.•••* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8. [inputs]: Add python-magic, python-xlrd, and trim-galore. [arguments]: Disable tests. Ricardo Wurmus2018-03-191-3/+7
* gnu: pigx-scrnaseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus2018-03-191-2/+2
* gnu: pigx-bsseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus2018-03-191-2/+2
* gnu: pigx-chipseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus2018-03-191-2/+2
* gnu: pigx-rnaseq: Use pandoc-1.•••* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus2018-03-191-2/+2
* gnu: Add pigx.•••* gnu/packages/bioinformatics.scm (pigx): New variable. Ricardo Wurmus2018-03-161-0/+36
* gnu: pigx-rnaseq: Disable memory hungry test.•••* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase to disable a memory hungry test. Ricardo Wurmus2018-03-161-0/+7
* gnu: Add pigx-scrnaseq.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq): New variable. Ricardo Wurmus2018-03-161-0/+77
* gnu: kentutils: Build with mariadb.•••* gnu/packages/bioinformatics.scm (kentutils)[inputs]: Replace mysql with mariadb. Ricardo Wurmus2018-03-161-1/+1
* gnu: Add Diversitree.•••* gnu/packages/bioinformatics.scm (r-diversitree): New variable. Leo Famulari2018-03-151-0/+32
* gnu: Add pigx-bsseq.•••* gnu/packages/bioinformatics.scm (pigx-bsseq): New variable. Ricardo Wurmus2018-03-111-0/+64
* gnu: Add pigx-chipseq.•••* gnu/packages/bioinformatics.scm (pigx-chipseq): New variable. Ricardo Wurmus2018-03-111-0/+66
* gnu: r-rhdf5lib: Make build reproducible.•••* gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp and host system kernel version. Ricardo Wurmus2018-03-091-0/+10
* gnu: Add r-phangorn.•••* gnu/packages/bioinformatics.scm (r-phangorn): New variable. Ricardo Wurmus2018-03-081-0/+28
* gnu: r-ape: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-ape): Move from here... * gnu/packages/cran.scm (r-ape): ...to here. Ricardo Wurmus2018-03-081-26/+0
* gnu: r-dropbead: Update to 0-2.d746c6f.•••* gnu/packages/bioinformatics.scm (r-dropbead): Update to 0-2.d746c6f. Ricardo Wurmus2018-03-081-3/+3
* gnu: Add pigx-rnaseq.•••* gnu/packages/bioinformatics.scm (pigx-rnaseq): New variable. Ricardo Wurmus2018-03-071-0/+67
* gnu: samtools: Update to 1.7.•••* gnu/packages/bioinformatics.scm (samtools): Update to 1.7. Ricardo Wurmus2018-03-061-2/+2
* gnu: htslib: Update to 1.7.•••* gnu/packages/bioinformatics.scm (htslib): Update to 1.7. [arguments]: Remove field. Ricardo Wurmus2018-03-061-11/+2
* gnu: r-rhdf5: Make build reproducible.•••* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and host system information from settings file. Ricardo Wurmus2018-03-061-0/+10
* gnu: piranha: Declare a source file-name.•••* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source file-name. Efraim Flashner2018-03-041-0/+1
* gnu: libdivsufsort: Declare a source file-name.•••* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a source file-name. Efraim Flashner2018-03-041-0/+1
* gnu: seek: Declare a source file-name.•••* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source file-name. Efraim Flashner2018-03-041-0/+1
* gnu: r-dropbead: Declare a source file-name.•••* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source file-name. Efraim Flashner2018-03-041-0/+1
* gnu: Add dropseq-tools.•••* gnu/packages/bioinformatics.scm (dropseq-tools): New variable. Ricardo Wurmus2018-03-031-0/+137
* gnu: Add java-picard-2.10.3.•••* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable. Ricardo Wurmus2018-03-031-0/+84
* gnu: Add java-htsjdk-2.10.1.•••* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable. Ricardo Wurmus2018-03-031-0/+27
* gnu: Add java-htsjdk-latest.•••* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable. Ricardo Wurmus2018-03-031-0/+43
* gnu: Add java-biojava-alignment-4.0.•••* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable. Ricardo Wurmus2018-03-031-0/+44
* gnu: Add java-biojava-phylo-4.0.•••* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable. Ricardo Wurmus2018-03-031-0/+36
* gnu: Add java-biojava-core-4.0.•••* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable. Ricardo Wurmus2018-03-031-0/+14
* gnu: Add java-biojava-alignment.•••* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable. Ricardo Wurmus2018-03-031-0/+44
* gnu: Add java-biojava-phylo.•••* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable. Ricardo Wurmus2018-03-031-0/+36
* gnu: Add java-forester-1.005.•••* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable. Ricardo Wurmus2018-03-031-0/+95
* gnu: Add java-forester.•••* gnu/packages/bioinformatics.scm (java-forester): New variable. Ricardo Wurmus2018-03-031-0/+76
* gnu: Add java-biojava-core.•••* gnu/packages/bioinformatics.scm (java-biojava-core): New variable. Ricardo Wurmus2018-03-031-0/+56
* gnu: Add fastqc.•••* gnu/packages/bioinformatics.scm (fastqc): New variable. Ricardo Wurmus2018-03-031-0/+79
* gnu: cutadapt: Update to 1.16.•••* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16. [source]: Fetch via git. [arguments]: Remove. [native-inputs]: Replace python-nose with python-pytest. Ricardo Wurmus2018-03-021-24/+8
* gnu: r-scran: Update to 1.6.8.•••* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8. Ricardo Wurmus2018-03-011-2/+2
* gnu: r-wgcna: Update to 1.63.•••* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63. Ricardo Wurmus2018-03-011-2/+2
* gnu: r-topgo: Update to 2.30.1.•••* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1. Ricardo Wurmus2018-03-011-2/+2
* gnu: r-genomicranges: Update to 1.30.3.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3. Ricardo Wurmus2018-03-011-2/+2
* gnu: r-limma: Update to 3.34.9.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9. Ricardo Wurmus2018-03-011-2/+2
generated by cgit v1.2.3 (git 2.47.1) at 2025-01-26 06:49:12 +0000