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* Merge branch 'master' into core-updatesRicardo Wurmus2018-02-181-2/+2
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| * gnu: vsearch: Update to 2.7.1.•••* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.1. Ben Woodcroft2018-02-171-2/+2
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-161-2/+2
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| * gnu: diamond: Update to 0.9.18.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.18. Ben Woodcroft2018-02-161-2/+2
* | gnu: Add python-loompy.•••* gnu/packages/bioinformatics.scm (python-loompy): New variable. Ricardo Wurmus2018-02-151-0/+28
* | gnu: Add r-dropbead.•••* gnu/packages/bioinformatics.scm (r-dropbead): New variable. Ricardo Wurmus2018-02-151-0/+29
* | gnu: Add r-delayedmatrixstats.•••* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): New variable. Ricardo Wurmus2018-02-151-0/+32
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-141-2/+2
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| * gnu: vsearch: Update to 2.7.0.•••* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.0. Ben Woodcroft2018-02-141-2/+2
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-131-43/+268
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| * gnu: r-gprofiler: Update to 0.6.3.•••* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.3. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-ensembldb: Update to 2.2.1.•••* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.1. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-gage: Update to 2.28.2.•••* gnu/packages/bioinformatics.scm (r-gage): Update to 2.28.2. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-keggrest: Update to 1.18.1.•••* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.18.1. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-seurat: Update to 2.2.0.•••* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.0. [propagated-inputs]: Remove r-ggjoy; add r-rcppeigen and r-ggridges. Ricardo Wurmus2018-02-131-3/+4
| * gnu: r-msnbase: Update to 2.4.2.•••* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.2. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-methylkit: Update to 1.4.1.•••* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.4.1. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-gkmsvm: Update to 0.79.0.•••* gnu/packages/bioinformatics.scm (r-gkmsvm): Update to 0.79.0. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-wgcna: Update to 1.62.•••* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.62. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-genomation: Update to 1.11.3.•••* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.11.3. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-genomicfeatures: Update to 1.30.3.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.3. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-rtracklayer: Update to 1.38.3.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.3. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-summarizedexperiment: Update to 1.8.1.•••* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.8.1. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-biomart: Update to 2.34.2.•••* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.2. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-genomicranges: Update to 1.30.1.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.1. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-limma: Update to 3.34.8.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.8. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-variantannotation: Update to 1.24.5.•••* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.5. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-edger: Update to 3.20.8.•••* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.8. Ricardo Wurmus2018-02-131-2/+2
| * gnu: r-bookdown: Update to 0.6.•••* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.6. [propagated-inputs]: Add r-xfun and ghc-pandoc. Ricardo Wurmus2018-02-131-3/+5
| * gnu: r-vegan: Update to 2.4-6.•••* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-6. Ricardo Wurmus2018-02-131-2/+2
| * gnu: Add r-scran.•••* gnu/packages/bioinformatics.scm (r-scran): New variable. Ricardo Wurmus2018-02-121-0/+42
| * gnu: Add r-scater.•••* gnu/packages/bioinformatics.scm (r-scater): New variable. Co-authored-by: Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com> Ricardo Wurmus2018-02-121-1/+45
| * gnu: Add r-singlecellexperiment.•••* gnu/packages/bioinformatics.scm (r-singlecellexperiment): New variable. Ricardo Wurmus2018-02-121-0/+27
| * gnu: Add r-beachmat.•••* gnu/packages/bioinformatics.scm (r-beachmat): New variable. Ricardo Wurmus2018-02-121-0/+27
| * gnu: Add r-rhdf5lib.•••* gnu/packages/bioinformatics.scm (r-rhdf5lib): New variable. Ricardo Wurmus2018-02-121-0/+56
| * gnu: Add r-hdf5array.•••* gnu/packages/bioinformatics.scm (r-hdf5array): New variable. Ricardo Wurmus2018-02-111-0/+26
* | gnu: multiqc: Update to 1.4.•••* gnu/packages/bioinformatics.scm (multiqc): Update to 1.4. [propagated-inputs]: Remove PYTHON-ENUM34. Marius Bakke2018-02-071-4/+3
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-031-3/+3
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| * gnu: diamond: Update to 0.9.17.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.17. Ben Woodcroft2018-02-021-3/+3
* | Merge branch 'master' into core-updatesMarius Bakke2018-02-011-2/+2
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| * gnu: diamond: Update to 0.9.16.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.16. Ben Woodcroft2018-01-271-2/+2
* | Merge branch 'master' into core-updatesMark H Weaver2018-01-261-4/+4
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| * gnu: diamond: Update to 0.9.15.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.15. Ben Woodcroft2018-01-261-2/+2
| * gnu: deeptools: Update URI.•••* gnu/packages/bioinformatics.scm (deeptools)[source, home-page]: Update URI. Tobias Geerinckx-Rice2018-01-261-2/+2
* | Merge branch 'master' into core-updatesMark H Weaver2018-01-231-3/+469
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| * gnu: star: Make reproducible.•••* gnu/packages/bioinformatics.scm (star)[arguments]: Add build phase "make-reproducible". Ricardo Wurmus2018-01-221-0/+5
| * gnu: khmer: Add aarch64-linux to supported systems.•••* gnu/packages/bioinformatics.scm (khmer)[supported-systems]: Add aarch64-linux to the supported systems. Efraim Flashner2018-01-221-2/+2
| * gnu: Add salmon.•••* gnu/packages/bioinformatics.scm (libstadenio-for-salmon, spdlog-for-salmon, bwa-for-salmon, salmon): New variables. Ricardo Wurmus2018-01-211-0/+263
| * gnu: Add sailfish.•••* gnu/packages/bioinformatics.scm (sailfish): New variable. Ricardo Wurmus2018-01-211-0/+147
| * gnu: Add libdivsufsort.•••* gnu/packages/bioinformatics.scm (libdivsufsort): New variable. Ricardo Wurmus2018-01-211-0/+28
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