| Commit message (Expand) | Author | Age | Files | Lines |
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| * | gnu: Remove redundant MariaDB inputs.•••For well-behaved build systems, including the "dev" output suffices.
* gnu/packages/bioinformatics.scm (kentutils)[inputs]: Remove MARIADB:LIB.
* gnu/packages/cran.scm (r-rmysql)[inputs]: Likewise.
* gnu/packages/databases.scm (python-mysqlclient, soci)[inputs]: Likewise.
* gnu/packages/qt.scm (qt-4, qtbase): Likewise.
* gnu/packages/ruby.scm (ruby-mysql2)[inputs]: Likewise.
| Marius Bakke | 2020-10-13 | 1 | -1/+0 |
| * | Merge branch 'master' into staging | Marius Bakke | 2020-10-13 | 1 | -6/+13 |
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| | * | gnu: htslib: Enable support for custom URI schemes.•••* gnu/packages/bioinformatics.scm (htslib)[arguments]: Enable support for custom URIs.
| Roel Janssen | 2020-10-07 | 1 | -0/+7 |
| | * | gnu: r-gqtlbase: Update to 1.20.4.•••* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.20.4.
| Ricardo Wurmus | 2020-10-06 | 1 | -2/+2 |
| | * | gnu: r-rhdf5: Update to 2.32.3.•••* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.3.
| Ricardo Wurmus | 2020-10-06 | 1 | -2/+2 |
| | * | gnu: r-biocstyle: Update to 2.16.1.•••* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.16.1.
| Ricardo Wurmus | 2020-10-06 | 1 | -2/+2 |
| * | | Merge branch 'master' into staging | Guillaume Le Vaillant | 2020-10-05 | 1 | -342/+5 |
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| | * | gnu: mafft: Update to 7.471.•••* gnu/packages/bioinformatics.scm (mafft): Update to 7.471.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Mădălin Ionel Patrașcu | 2020-09-25 | 1 | -3/+3 |
| | * | gnu: mafft: Use HTTPS home page URI.•••* gnu/packages/bioinformatics.scm (mafft)[home-page, license]: Use HTTPS URI.
| Nicolas Goaziou | 2020-09-22 | 1 | -2/+2 |
| | * | gnu: r-fithic: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-fithic): Move from here...
* gnu/packages/bioconductor.scm (r-fithic): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-14 | 1 | -26/+0 |
| | * | gnu: r-hitc: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-hitc): Move from here...
* gnu/packages/bioconductor.scm (r-hitc): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-14 | 1 | -29/+0 |
| | * | gnu: r-hdf5array: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-hdf5array): Move from here...
* gnu/packages/bioconductor.scm (r-hdf5array): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-14 | 1 | -30/+0 |
| | * | gnu: r-rhdf5lib: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-rhdf5lib): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5lib): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-14 | 1 | -82/+0 |
| | * | gnu: r-beachmat: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-beachmat): Move from here...
* gnu/packages/bioconductor.scm (r-beachmat): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-14 | 1 | -25/+0 |
| | * | gnu: r-singlecellexperiment: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-14 | 1 | -29/+0 |
| | * | gnu: r-scater: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-scater): Move from here...
* gnu/packages/bioconductor.scm (r-scater): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-14 | 1 | -37/+0 |
| | * | gnu: r-scran: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-scran): Move from here...
* gnu/packages/bioconductor.scm (r-scran): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-14 | 1 | -43/+0 |
| | * | gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-14 | 1 | -36/+0 |
| * | | Merge branch 'staging' into wip-lisp | Guillaume Le Vaillant | 2020-09-23 | 1 | -1/+1 |
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| | * | Merge remote-tracking branch 'origin/master' into staging | Efraim Flashner | 2020-09-05 | 1 | -111/+303 |
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| | * | | gnu: check: Update to 0.15.1.•••* gnu/packages/check.scm (check): Update to 0.15.1.
(check-0.14): New public variable.
* gnu/packages/backup.scm (burp)[native-inputs]: Change from CHECK to
CHECK-0.14.
* gnu/packages/bioinformatics.scm (libsbml)[native-inputs]: Likewise.
* gnu/packages/databases.scm (recutils)[native-inputs]: Likewise.
* gnu/packages/electronics.scm (libsigrokdecode)[native-inputs]: Likewise.
* gnu/packages/enlightenment.scm (efl, edi)[native-inputs]: Likewise.
* gnu/packages/gnome.scm (gdm)[inputs]: Likewise.
* gnu/packages/gtk.scm (girara)[native-inputs]: Likewise.
* gnu/packages/messaging.scm (pidgin)[native-inputs]: Likewise.
* gnu/packages/networking.scm (iodine)[native-inputs]: Likewise.
* gnu/packages/pulseaudio.scm (pulseaudio)[native-inputs]: Likewise.
* gnu/packages/sssd.scm (sssd)[native-inputs]: Likewise.
* gnu/packages/web.scm (libwapcaplet)[native-inputs]: Likewise.
| Marius Bakke | 2020-07-25 | 1 | -1/+1 |
| * | | | gnu: r-absfiltergsea: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here...
* gnu/packages/cran.scm (r-absfiltergsea): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-11 | 1 | -27/+0 |
| * | | | gnu: r-diversitree: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-diversitree): Move from here...
* gnu/packages/cran.scm (r-diversitree): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-11 | 1 | -31/+0 |
| * | | | gnu: r-phangorn: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-phangorn): Move from here...
* gnu/packages/cran.scm (r-phangorn): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-11 | 1 | -28/+0 |
| * | | | gnu: r-seurat: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-seurat): Move from here...
* gnu/packages/cran.scm (r-seurat): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-11 | 1 | -65/+0 |
| * | | | gnu: r-maldiquant: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here...
* gnu/packages/cran.scm (r-maldiquant): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-11 | 1 | -26/+0 |
| * | | | gnu: r-seqminer: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-seqminer): Move from here...
* gnu/packages/cran.scm (r-seqminer): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-11 | 1 | -22/+0 |
| * | | | gnu: r-qtl2: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-qtl2): Move from here...
* gnu/packages/cran.scm (r-qtl2): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-11 | 1 | -26/+0 |
| * | | | gnu: r-qtl: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-qtl): Move from here...
* gnu/packages/cran.scm (r-qtl): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| zimoun | 2020-09-11 | 1 | -25/+0 |
| * | | | gnu: Move r-bisquerna.•••* gnu/packages/bioinformatics.scm (r-bisquerna): Move to ...
* gnu/packages/cran.scm: ... here.
| Roel Janssen | 2020-09-10 | 1 | -25/+0 |
| * | | | Revert "gnu: Add r-loomr."•••This reverts commit 1f56ec08af704bdc7aa3e143bf5ce351c5306dea.
This package is not free software.
| Ricardo Wurmus | 2020-09-09 | 1 | -26/+0 |
| * | | | gnu: Add r-bisquerna.•••* gnu/packages/bioinformatics.scm (r-bisquerna): New variable.
| Roel Janssen | 2020-09-09 | 1 | -0/+25 |
| * | | | gnu: Add r-loomr.•••* gnu/packages/bioinformatics.scm (r-loomr): New variable.
| Roel Janssen | 2020-09-09 | 1 | -0/+26 |
| * | | | gnu: seqmagick: Update to 0.8.0.•••* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.0.
| Andreas Enge | 2020-09-05 | 1 | -2/+2 |
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| * | | gnu: delly: Update to 0.8.3.•••* gnu/packages/bioinformatics.scm (delly): Update to 0.8.3.
[inputs]: Order alphabetically.
| Efraim Flashner | 2020-08-30 | 1 | -4/+4 |
| * | | gnu: vcflib: Install pkgconfig file.•••* gnu/packages/bioinformatics.scm (vcflib)[arguments]: Adjust custom
'install phase to add vcflib.pc.
| Efraim Flashner | 2020-08-27 | 1 | -1/+17 |
| * | | gnu: vcflib: Use shared libraries.•••* gnu/packages/bioinformatics.scm (vcflib)[source]: Add patch. Add
snippet to adjust files for new locations.
[inputs]: Add fastahack, smithwaterman, tabixpp, xz.
[native-inputs]: Add pkg-config. Remove the package-source of fastahack,
fsom, smithwaterman, tabixpp.
[arguments]: Remove make-flags. Add custom phase to add the output lib
directory to the rpath. Adjust custom 'unpack-submodule-sources for the
change in native-inputs. Adjust custom 'install phase to also install
libraries and headers.
* gnu/packages/patches/vcflib-use-shared-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
| Efraim Flashner | 2020-08-27 | 1 | -37/+33 |
| * | | gnu: fastahack: Install pkgconfig file.•••* gnu/packages/bioinformatics.scm (fastahack)[arguments]: Adjust custom
'install phase to add fastahack.pc.
| Efraim Flashner | 2020-08-27 | 1 | -1/+16 |
| * | | gnu: fastahack: Build and install shared library and headers.•••* gnu/packages/bioinformatics.scm (fastahack)[arguments]: Add phase to
build PIE objects. Add custom phase to build dynamic library. Adjust
custom 'install phase to install shared library and headers.
| Efraim Flashner | 2020-08-27 | 1 | -2/+20 |
| * | | gnu: smithwaterman: Install pkgconfig file.•••* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Adjust
custom 'install phase to add smithwaterman.pc file.
| Efraim Flashner | 2020-08-27 | 1 | -1/+16 |
| * | | gnu: smithwaterman: Build and install shared library and headers.•••* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Add custom
phase to build PIE objects. Add custom 'build-dynamic phase to build
dynamic library. Adjust custom 'install phase to install shared library
and headers.
| Efraim Flashner | 2020-08-27 | 1 | -0/+17 |
| * | | gnu: tabixpp: Install pkgconfig file.•••* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Adjust custom
'install phase to add tabixpp.pc file.
| Efraim Flashner | 2020-08-27 | 1 | -0/+15 |
| * | | gnu: tabixpp: Build and install shared library and headers.•••* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Adjust custom
'build phase to build shared library. Adjust custom 'install phase to
install libraries and header.
| Efraim Flashner | 2020-08-27 | 1 | -4/+11 |
| * | | gnu: r-complexheatmap: Update to 2.4.3.•••* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.3.
| Ricardo Wurmus | 2020-08-20 | 1 | -2/+2 |
| * | | gnu: r-gage: Update to 2.38.3.•••* gnu/packages/bioinformatics.scm (r-gage): Update to 2.38.3.
[propagated-inputs]: Add r-go-db.
| Ricardo Wurmus | 2020-08-20 | 1 | -2/+3 |
| * | | gnu: r-annotationhub: Update to 2.20.2.•••* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.2.
| Ricardo Wurmus | 2020-08-20 | 1 | -2/+2 |
| * | | gnu: r-delayedarray: Update to 0.14.1.•••* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.14.1.
| Ricardo Wurmus | 2020-08-20 | 1 | -2/+2 |
| * | | gnu: r-annotationdbi: Update to 1.50.3.•••* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.50.3.
| Ricardo Wurmus | 2020-08-20 | 1 | -2/+2 |
| * | | gnu: r-biocviews: Update to 1.56.2.•••* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.2.
| Ricardo Wurmus | 2020-08-20 | 1 | -2/+2 |
| * | | gnu: pigx-chipseq: Update to 0.0.43.•••* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.43.
| Ricardo Wurmus | 2020-08-19 | 1 | -2/+2 |
