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* gnu: r-bgx: Build without CPU tuning.•••Fixes <https://issues.guix.gnu.org/57210>. * gnu/packages/bioconductor.scm (r-bgx)[arguments]: Add phase 'do-not-tune-cflags-for-reproducibility to patch configure.ac. [inputs]: Add boost. [native-inputs]: Add autoconf and automake. Ricardo Wurmus2022-08-141-0/+15
* gnu: r-lpsymphony: Build reproducibly.•••* gnu/packages/bioconductor.scm (r-lpsymphony)[arguments]: Add build phase 'make-build-order-reproducible. Ricardo Wurmus2022-08-141-0/+10
* gnu: r-activepathways: Update to 1.1.1.•••* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.1. Ricardo Wurmus2022-08-101-2/+2
* gnu: Add r-ciara.•••* gnu/packages/bioconductor.scm (r-ciara): New variable. Ricardo Wurmus2022-08-091-0/+24
* gnu: Add r-biomartr.•••* gnu/packages/bioconductor.scm (r-biomartr): New variable. Ricardo Wurmus2022-08-051-0/+47
* gnu: Add r-infercnv.•••* gnu/packages/bioconductor.scm (r-infercnv): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-08-011-0/+60
* gnu: Add r-muscat.•••* gnu/packages/bioconductor.scm (r-muscat): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-08-011-0/+50
* gnu: Add comma after “i.e.” in descriptions.•••* gnu/packages/bioconductor.scm (r-anota)[description]: Add comma after “i.e.”. * gnu/packages/code.scm (xenon)[description]: Same. * gnu/packages/cran.scm (r-crosstalk)[description]: Same. * gnu/packages/python-xyz.scm (python-radon)[description]: Same. * gnu/packages/statistics.scm (r-logspline)[description]: Same. * gnu/packages/suckless.scm (tabbed)[description]: Same. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience2022-08-011-1/+1
* gnu: r-affycompatible: Build reproducibly.•••* gnu/packages/bioconductor.scm (r-affycompatible)[arguments]: Sort XML elements before generating R code from them. Ricardo Wurmus2022-07-151-0/+19
* gnu: Add r-dittoseq.•••* gnu/packages/bioconductor.scm (r-dittoseq): New variable. Ricardo Wurmus2022-07-041-0/+44
* gnu: r-tcgabiolinks: Update to 2.24.3.•••* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-bionetstat: Update to 1.16.1.•••* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-bgeedb: Update to 2.22.3.•••* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-ggbio: Update to 1.44.1.•••* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-rsubread: Update to 2.10.4.•••* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-biosigner: Update to 1.24.2.•••* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment. Ricardo Wurmus2022-07-021-3/+9
* gnu: r-ropls: Update to 1.28.2.•••* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment. Ricardo Wurmus2022-07-021-3/+6
* gnu: r-genomicscores: Update to 2.8.2.•••* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2. [propagated-inputs]: Add r-httr. Ricardo Wurmus2022-07-021-2/+3
* gnu: r-clusterprofiler: Update to 4.4.4.•••* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-batchelor: Update to 1.12.3.•••* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-matrixgenerics: Update to 1.8.1.•••* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-zellkonverter: Update to 1.6.3.•••* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-simplifyenrichment: Update to 1.6.1.•••* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-rtracklayer: Update to 1.56.1.•••* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-organismdbi: Update to 1.38.1.•••* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-limma: Update to 3.52.2.•••* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-ensembldb: Update to 2.20.2.•••* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2. Ricardo Wurmus2022-07-021-2/+2
* gnu: r-restfulr: Update to 0.0.15.•••* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15. Ricardo Wurmus2022-07-021-2/+2
* gnu: Add r-antiprofiles.•••* gnu/packages/bioconductor.scm (r-antiprofiles): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-07-011-0/+26
* gnu: Add r-annmap.•••* gnu/packages/bioconductor.scm (r-annmap): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-07-011-0/+34
* gnu: Add r-anf.•••* gnu/packages/bioconductor.scm (r-anf): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-07-011-0/+28
* gnu: Add r-anaquin.•••* gnu/packages/bioconductor.scm (r-anaquin): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu2022-07-011-0/+30
* gnu: Add r-amaretto.•••* gnu/packages/bioconductor.scm (r-amaretto): New variable. Mădălin Ionel Patrașcu2022-06-301-0/+52
* gnu: Add r-amountain.•••* gnu/packages/bioconductor.scm (r-amountain): New variable. Mădălin Ionel Patrașcu2022-06-301-0/+24
* gnu: r-metap: Update to 1.8.•••* gnu/packages/bioconductor.scm (r-metap): Update to 1.8. [propagated-inputs]: Add r-mathjaxr and r-qqconf. Ricardo Wurmus2022-06-301-3/+8
* gnu: r-nbpseq: Update to 0.3.1.•••* gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1. Ricardo Wurmus2022-06-131-2/+2
* gnu: r-restfulr: Update to 0.0.14.•••* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14. Ricardo Wurmus2022-06-131-2/+2
* gnu: Add r-deconvr.•••* gnu/packages/bioconductor.scm (r-deconvr): New variable. Ricardo Wurmus2022-06-121-0/+44
* gnu: r-hdf5array: Update to 1.24.1.•••* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1. Ricardo Wurmus2022-06-121-2/+2
* gnu: r-universalmotif: Update to 1.14.1.•••* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1. Ricardo Wurmus2022-06-121-2/+2
* gnu: r-rsubread: Update to 2.10.2.•••* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2. Ricardo Wurmus2022-06-121-2/+2
* gnu: r-clusterprofiler: Update to 4.4.2.•••* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2. Ricardo Wurmus2022-06-121-2/+2
* gnu: r-monocle: Update to 2.24.1.•••* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1. Ricardo Wurmus2022-06-121-2/+2
* gnu: r-chippeakanno: Update to 3.30.1.•••* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1. Ricardo Wurmus2022-06-121-2/+2
* gnu: r-zellkonverter: Update to 1.6.2.•••* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2. Ricardo Wurmus2022-06-121-2/+2
* gnu: r-keggrest: Update to 1.36.2.•••* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2. Ricardo Wurmus2022-06-121-2/+2
* gnu: r-genomicfeatures: Update to 1.48.3.•••* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3. Ricardo Wurmus2022-06-121-2/+2
* gnu: r-biocparallel: Update to 1.30.3.•••* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3. [propagated-inputs]: Add r-codetools. Ricardo Wurmus2022-06-121-3/+3
* gnu: r-deepsnv: Update to 1.42.1.•••* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1. Ricardo Wurmus2022-06-121-2/+2
* gnu: r-batchelor: Update to 1.12.1.•••* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.1. Ricardo Wurmus2022-05-301-2/+2
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