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* gnu: Add r-infercnv.Mădălin Ionel Patrașcu2022-08-011-0/+60
| | | | | | * gnu/packages/bioconductor.scm (r-infercnv): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-muscat.Mădălin Ionel Patrașcu2022-08-011-0/+50
| | | | | | * gnu/packages/bioconductor.scm (r-muscat): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add comma after “i.e.” in descriptions.Paul A. Patience2022-08-011-1/+1
| | | | | | | | | | | | * gnu/packages/bioconductor.scm (r-anota)[description]: Add comma after “i.e.”. * gnu/packages/code.scm (xenon)[description]: Same. * gnu/packages/cran.scm (r-crosstalk)[description]: Same. * gnu/packages/python-xyz.scm (python-radon)[description]: Same. * gnu/packages/statistics.scm (r-logspline)[description]: Same. * gnu/packages/suckless.scm (tabbed)[description]: Same. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: r-affycompatible: Build reproducibly.Ricardo Wurmus2022-07-151-0/+19
| | | | | * gnu/packages/bioconductor.scm (r-affycompatible)[arguments]: Sort XML elements before generating R code from them.
* gnu: Add r-dittoseq.Ricardo Wurmus2022-07-041-0/+44
| | | | * gnu/packages/bioconductor.scm (r-dittoseq): New variable.
* gnu: r-tcgabiolinks: Update to 2.24.3.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
* gnu: r-bionetstat: Update to 1.16.1.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
* gnu: r-bgeedb: Update to 2.22.3.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
* gnu: r-ggbio: Update to 1.44.1.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
* gnu: r-rsubread: Update to 2.10.4.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
* gnu: r-biosigner: Update to 1.24.2.Ricardo Wurmus2022-07-021-3/+9
| | | | | * gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
* gnu: r-ropls: Update to 1.28.2.Ricardo Wurmus2022-07-021-3/+6
| | | | | * gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
* gnu: r-genomicscores: Update to 2.8.2.Ricardo Wurmus2022-07-021-2/+3
| | | | | * gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2. [propagated-inputs]: Add r-httr.
* gnu: r-clusterprofiler: Update to 4.4.4.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
* gnu: r-batchelor: Update to 1.12.3.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
* gnu: r-matrixgenerics: Update to 1.8.1.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
* gnu: r-zellkonverter: Update to 1.6.3.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
* gnu: r-simplifyenrichment: Update to 1.6.1.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
* gnu: r-rtracklayer: Update to 1.56.1.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
* gnu: r-organismdbi: Update to 1.38.1.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
* gnu: r-limma: Update to 3.52.2.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
* gnu: r-ensembldb: Update to 2.20.2.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
* gnu: r-restfulr: Update to 0.0.15.Ricardo Wurmus2022-07-021-2/+2
| | | | * gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15.
* gnu: Add r-antiprofiles.Mădălin Ionel Patrașcu2022-07-011-0/+26
| | | | | | * gnu/packages/bioconductor.scm (r-antiprofiles): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-annmap.Mădălin Ionel Patrașcu2022-07-011-0/+34
| | | | | | * gnu/packages/bioconductor.scm (r-annmap): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-anf.Mădălin Ionel Patrașcu2022-07-011-0/+28
| | | | | | * gnu/packages/bioconductor.scm (r-anf): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-anaquin.Mădălin Ionel Patrașcu2022-07-011-0/+30
| | | | | | * gnu/packages/bioconductor.scm (r-anaquin): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add r-amaretto.Mădălin Ionel Patrașcu2022-06-301-0/+52
| | | | * gnu/packages/bioconductor.scm (r-amaretto): New variable.
* gnu: Add r-amountain.Mădălin Ionel Patrașcu2022-06-301-0/+24
| | | | * gnu/packages/bioconductor.scm (r-amountain): New variable.
* gnu: r-metap: Update to 1.8.Ricardo Wurmus2022-06-301-3/+8
| | | | | * gnu/packages/bioconductor.scm (r-metap): Update to 1.8. [propagated-inputs]: Add r-mathjaxr and r-qqconf.
* gnu: r-nbpseq: Update to 0.3.1.Ricardo Wurmus2022-06-131-2/+2
| | | | * gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1.
* gnu: r-restfulr: Update to 0.0.14.Ricardo Wurmus2022-06-131-2/+2
| | | | * gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14.
* gnu: Add r-deconvr.Ricardo Wurmus2022-06-121-0/+44
| | | | * gnu/packages/bioconductor.scm (r-deconvr): New variable.
* gnu: r-hdf5array: Update to 1.24.1.Ricardo Wurmus2022-06-121-2/+2
| | | | * gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
* gnu: r-universalmotif: Update to 1.14.1.Ricardo Wurmus2022-06-121-2/+2
| | | | * gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
* gnu: r-rsubread: Update to 2.10.2.Ricardo Wurmus2022-06-121-2/+2
| | | | * gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2.
* gnu: r-clusterprofiler: Update to 4.4.2.Ricardo Wurmus2022-06-121-2/+2
| | | | * gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2.
* gnu: r-monocle: Update to 2.24.1.Ricardo Wurmus2022-06-121-2/+2
| | | | * gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1.
* gnu: r-chippeakanno: Update to 3.30.1.Ricardo Wurmus2022-06-121-2/+2
| | | | * gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1.
* gnu: r-zellkonverter: Update to 1.6.2.Ricardo Wurmus2022-06-121-2/+2
| | | | * gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2.
* gnu: r-keggrest: Update to 1.36.2.Ricardo Wurmus2022-06-121-2/+2
| | | | * gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2.
* gnu: r-genomicfeatures: Update to 1.48.3.Ricardo Wurmus2022-06-121-2/+2
| | | | * gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3.
* gnu: r-biocparallel: Update to 1.30.3.Ricardo Wurmus2022-06-121-3/+3
| | | | | * gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3. [propagated-inputs]: Add r-codetools.
* gnu: r-deepsnv: Update to 1.42.1.Ricardo Wurmus2022-06-121-2/+2
| | | | * gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1.
* gnu: r-batchelor: Update to 1.12.1.Ricardo Wurmus2022-05-301-2/+2
| | | | * gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.1.
* Merge branch 'wip-r'Ricardo Wurmus2022-05-291-922/+998
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| * gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Update to 1.3.993.Ricardo Wurmus2022-05-291-8/+8
| | | | | | | | * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): Update to 1.3.993.
| * gnu: Add r-msdata.Ricardo Wurmus2022-05-281-0/+23
| | | | | | | | * gnu/packages/bioconductor.scm (r-msdata): New variable.
| * gnu: r-tcgabiolinksgui-data: Update to 1.16.0.Ricardo Wurmus2022-05-281-2/+2
| | | | | | | | * gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.16.0.
| * gnu: r-curatedtcgadata: Update to 1.18.0.Ricardo Wurmus2022-05-281-3/+3
| | | | | | | | | | * gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.18.0. [native-inputs]: Add r-knitr.
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