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* gnu: guile-ssh: Update to 0.11.2.•••* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2. [source]: Remove 'patches', 'modules', and 'snippet'. * gnu/packages/patches/guile-ssh-channel-finalization.patch, gnu/packages/patches/guile-ssh-double-free.patch, gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them. Ludovic Courtès2017-08-011-3/+0
* gnu: python-pbr-minimal: Update to 3.0.1•••* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1 [source]: Update hash and remove patch. * gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Muriithi Frederick Muriuki2017-08-011-1/+0
* gnu: libgit2: Update to 0.26.0.•••* gnu/packages/version-control.scm (libgit2): Update to 0.26.0. Remove "libgit2-use-after-free.patch". * gnu/packages/patches/libgit2-use-after-free.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès2017-07-311-1/+0
* services: Add memcached.•••* gnu/services/databases.scm (memcached-service-type, %memcached-accounts): New variables. (<memcached-configuration>): New record type. (memcached-service-type): New procedures. * gnu/tests/databases.scm: New file. * doc/guix.texi (Database Services): Document the new memcached service. * gnu/local.mk (GNU_SYSTEM_MODULES): Add entry for tests/databases.scm. Christopher Baines2017-07-301-0/+1
* gnu: erlang: Fix man-pages search path of 'erl -man'.•••* gnu/packages/patches/erlang-man-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/erlang.scm (erlang)[source]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Peter Mikkelsen2017-07-291-0/+1
* gnu: services: admin: Add tailon.•••* gnu/services/admin.scm (<tailon-configuration>, <tailon-configuration-file>): New record types. (tailon-configuration-files-string, tailon-shepherd-service): New procedures. (%tailon-accounts, tailon-service-type: New variables. * doc/guix.texi (Monitoring Services: Document the Tailon service. * gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/tests/admin.scm. * gnu/tests/admin.scm: New file. Christopher Baines2017-07-291-0/+1
* gnu: mg: Move to (gnu packages text-editors).•••* gnu/packages/mg.scm: Remove. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove it. * gnu/packages/text-editors.scm (mg): New variable. Ludovic Courtès2017-07-261-1/+0
* gnu: evince: Update to 3.24.1.•••* gnu/packages/gnome.scm (evince): Update to 3.24.1. [source]: Remove obsolete patch. * gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Kei Kebreau2017-07-251-1/+0
* gnu: perl-dbd-mysql: Fix CVE-2017-10788.•••* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it. Kei Kebreau2017-07-251-0/+1
* gnu: Add guile2.0-bytestructures.•••* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-bytestructures)[source]: Use it. [arguments]: Unpack the source. [native-inputs]: New field. (guile2.0-bytestructures): New variable. Ludovic Courtès2017-07-251-0/+1
* gnu: gnome: Add deja-dup.•••* gnu/packages/gnome.scm (deja-dup): New variable. * gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch file entry. Christopher Baines2017-07-241-0/+1
* gnu: metabat: Update to 2.11.1.•••* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1. [source]: Add patch to fix compilation. [arguments]: Adjust regular expressions modifying 'SConstruct'. * gnu/packages/patches/metabat-fix-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft2017-07-231-0/+1
* gnu: bcftools: Update to 1.5.•••* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5. [origin]: Remove fix-makefile patch. [arguments]: Add configure flags, add LIBS make flag. Do not delete configure phase. * gnu/packages/patches/bcftools-fix-makefile.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ben Woodcroft2017-07-231-1/+0
* gnu: bcftools: Update to 1.4.1.•••* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1. [arguments]: Move Makefile modifications from here ... [source]: ... to added patch. Adjust patch for update to 1.4. * gnu/packages/patches/bcftools-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Ben Woodcroft2017-07-231-0/+1
* gnu: quassel: Enable TLS.•••* gnu/packages/patches/quassel-fix-tls-check.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/irc.scm (quassel)[source]: Use it. Signed-off-by: Leo Famulari <leo@famulari.name> Ryan Moe2017-07-221-0/+1
* gnu: Add openmolar.•••* gnu/packages/medical.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Co-authored-by: Quiliro <quiliro@fsfla.org> Ricardo Wurmus2017-07-221-0/+1
* gnu: Add cran module.•••* gnu/packages/cran.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/statistics.scm (r-colorspace): Move to cran.scm. Ricardo Wurmus2017-07-221-0/+1
* gnu: Remove python-fake-factory leftovers.•••This is a followup to c799eb2eb8b1a820147af96988eddaa9f752994b. * gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Marius Bakke2017-07-221-1/+0
* gnu: python-pyopenssl: Update to 17.2.0.•••* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0. [native-inputs]: Add PYTHON-FLAKY. [source](patches): Remove. Marius Bakke2017-07-221-1/+0
* gnu: heimdal: Fix CVE-2017-{6594,11103}.•••* gnu/packages/patches/heimdal-CVE-2017-6594.patch, gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/kerberos.scm (heimdal)[source]: Use them. Alex Vong2017-07-201-0/+2
* gnu: Remove a left-over patch.•••This is a followup to commit 426b0b898f70a58133d80779980f163a5761686e. * gnu/packages/patches/pcre-CVE-2017-7186.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari2017-07-201-1/+0
* gnu: Add libusb@0.1.•••* gnu/packages/libusb.scm (libusb-0.1): New variable. * gnu/packages/patches/libusb-0.1-disable-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Jonathan Brielmaier2017-07-201-0/+1
* gnu: Add patches missing from dist_patch_DATA.•••Reported by Eric Bavier. * gnu/local.mk (dist_patch_DATA): Add gnu/packages/patches/hmmer-remove-cpu-specificity.patch, gnu/packages/patches/jacal-fix-texinfo.patch, gnu/packages/patches/python-pbr-fix-man-page-support.patch and gnu/packages/patches/vsearch-unbundle-cityhash.patch. Ben Woodcroft2017-07-201-0/+4
* gnu: Rename (gnu packages gforth) to (gnu packages forth).•••* gnu/local.mk (GNU_SYSTEM_MODULES): Rename gforth.scm to forth.scm. * gnu/packages/gforth.scm: Rename file to forth.scm. * gnu/packages/forth.scm: Renamed from gforth.scm. ng02017-07-181-1/+1
* gnu: qemu: Fix CVE-2017-11334.•••* gnu/packages/patches/qemu-CVE-2017-11334.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (qemu)[source]: Use it. Leo Famulari2017-07-171-0/+1
* gnu: chicken: Fix CVE-2017-11343.•••* gnu/packages/patches/chicken-CVE-2017-11343.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/scheme.scm (chicken)[source]: Use it. Leo Famulari2017-07-171-0/+1
* gnu: Add Poly/ML.•••* gnu/packages/sml.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Andy Patterson2017-07-171-0/+1
* gnu: supertuxkart: Fix build on aarch64.•••* gnu/packages/games.scm (supertuxkart)[source]: Add patch. * gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner2017-07-171-0/+1
* gnu: Add sooperlooper.•••* gnu/packages/patches/sooperlooper-build-with-wx-30.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/music.scm (sooperlooper): New variable. Ricardo Wurmus2017-07-171-0/+1
* gnu: Rename (gnu packages qemu) to (gnu packages virtualization).•••* gnu/packages/qemu.scm: Rename this ... * gnu/packages/virtualization.scm: ... to this. * gnu/local.mk (GNU_SYSTEM_MODULES), gnu/packages/bootloaders.scm, gnu/packages/debug.scm, gnu/packages/gnome.scm, gnu/system/vm.scm, gnu/tests/install.scm: Adjust accordingly. 宋文武2017-07-151-1/+1
* bootloader: Add u-boot.•••* gnu/bootloader/u-boot.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi: Document it. Danny Milosavljevic2017-07-151-0/+1
* gnu: evince: Fix CVE-2017-1000083.•••* gnu/packages/patches/evince-CVE-2017-1000083.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (evince)[source]: Use it. Marius Bakke2017-07-131-0/+1
* gnu: spice: Fix CVE-2017-7506.•••* gnu/packages/patches/spice-CVE-2017-7506.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/spice.scm (spice)[source]: Use it. Leo Famulari2017-07-121-0/+1
* gnu: hop: Update to 3.1.0-pre2.•••* gnu/packages/scheme.scm (hop): Update to 3.1.0-pre2. [source]: Remove unnecessary patch. [arguments]: Enable tests; disable parallel building; specify BIGLOO in make-flags. [inputs]: Add libgc, libunistring, libuv, pcre and sqlite. * gnu/local.mk (dist_patch_DATA): Remove unnecessary patch. * gnu/packages/patches/hop-linker-flags.patch: Delete file. Kei Kebreau2017-07-101-1/+0
* gnu: bigloo: Update to 4.3a.•••* gnu/packages/scheme.scm (bigloo): Update to 4.3a. [source]: Remove old patch. Add snippet. [arguments]: Adjust the build phases accordingly. [inputs]: Add libgc, libunistring, libuv, openssl, pcre and sqlite. Kei Kebreau2017-07-101-1/+0
* gnu: libtiff: Fix two integer overflows.•••* gnu/packages/patches/libtiff-tiffycbcrtorgb-integer-overflow.patch, gnu/packages/patches/libtiff-tiffycbcrtorgbinit-integer-overflow.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them. Leo Famulari2017-07-101-0/+2
* gnu: ncurses: Fix CVE-2017-10684 and CVE-2017-10685.•••* gnu/packages/patches/ncurses-CVE-2017-10684-10685.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ncurses.scm (ncurses)[replacement]: New field. (ncurses/fixed): New variable. Leo Famulari2017-07-101-0/+1
* gnu: poppler: Fix null pointer dereferences.•••* gnu/packages/patches/poppler-fix-crash-with-broken-documents.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (poppler/fixed)[source]: Add the patch. Mark H Weaver2017-07-101-0/+1
* gnu: dblatex: Use texlive-union.•••* gnu/packages/patches/dblatex-remove-multirow.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/docbook.scm (dblatex)[source]: Use patch. [inputs]: Replace "texlive" with a texlive-union. Ricardo Wurmus2017-07-091-0/+1
* gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776.•••This is a followup to commit 95bbaa02aa63bc5eae36f686f1ed9915663aa4cf. See <https://bugs.gnu.org/27621> for more information. Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not possible to graft the newer version in place of the older one. This change leaves CVE-2017-9775 unfixed for now. * gnu/packages/patches/poppler-CVE-2017-9776.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (poppler-0.56.0): Replace with ... (poppler/fixed): ... new variable. (poppler)[replacement]: Replaced with poppler/fixed. Leo Famulari2017-07-091-0/+1
* gnu: blast+: Update to 2.6.0.•••* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. [origin]: Remove bundled pcre. Add patch. [arguments]: Replace paths in run_with_lock.c. Configure with pcre. [inputs]: Add pcre, perl, python. * gnu/packages/patches/blast+-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft2017-07-081-0/+1
* gnu: python-pyopenssl: Fix test failure on 32-bit platforms.•••* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-pyopenssl)[source]: Use it. Marius Bakke2017-07-071-0/+1
* gnu: libtiff: Fix CVE-2017-{9936,10688}.•••* gnu/packages/patches/libtiff-CVE-2017-9936.patch, gnu/packages/patches/libtiff-CVE-2017-10688.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them. Signed-off-by: Leo Famulari <leo@famulari.name> Alex Vong2017-07-071-0/+2
* gnu: xorg-server: Fix CVE-2017-{10971,10972}.•••* gnu/packages/patches/xorg-server-CVE-2017-10971.patch, gnu/packages/patches/xorg-server-CVE-2017-10972.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xorg.scm (xorg-server)[source]: Use them. Signed-off-by: Leo Famulari <leo@famulari.name> Kei Kebreau2017-07-061-0/+2
* gnu: gemma: Fix building on non-Intel architectures.•••* gnu/packages/patches/gemma-intel-compat.patch: New file. * gnu/packages/bioinformatics.scm (gemma)[source]: Add patch. [arguments]: Add NO_INTEL_COMPAT flag on non-Intel architectures. * gnu/local.mk (dist_patch_DATA): Register patch. Efraim Flashner2017-07-041-0/+1
* gnu: gajim: Update to 0.16.8.•••* gnu/packages/messaging.scm (gajim): Update to 0.16.8. [source]: Remove patch. * gnu/packages/patches/gajim-CVE-2016-10376.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Arun Isaac2017-07-041-1/+0
* services: Add 'sysctl-service-type'.•••* gnu/services/sysctl.scm: New file. * doc/guix.texi (Miscellaneous Services): Document it. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. 宋文武2017-07-041-0/+1
* gnu: python-pyopenssl: Update to 17.1.0.•••* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.1.0. [source]: Remove patch. [native-inputs]: Add PYTHON-PRETEND. [arguments]<#:phases>: Disable the network test here instead of via a patch. Also disable one new test. * gnu/packages/patches/python-pyopenssl-skip-network-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Marius Bakke2017-07-041-1/+0
* gnu: gcr: Enable working tests.•••* gnu/packages/patches/gcr-disable-failing-tests.patch, gnu/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch: New files. * gnu/local.mk (dist_patch_DATA): Add patches. * gnu/packages/gnome.scm (gcr)[source]: Use patches. [arguments]: Enable tests. Kei Kebreau2017-07-031-0/+2
* gnu: ansible: Apply experimental patch to deal with wrapping of ansible script.•••See <http://lists.gnu.org/archive/html/bug-guix/2017-05/msg00015.html> for the rationale. * gnu/packages/patches/ansible-wrap-program-hack.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (ansible)[source]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jelle Licht2017-06-291-0/+1
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