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* gnu: r-rcppparallel: Update to 5.0.0.•••* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.0. Ricardo Wurmus2020-03-121-2/+2
* gnu: r-sjplot: Update to 2.8.3.•••* gnu/packages/cran.scm (r-sjplot): Update to 2.8.3. [propagated-inputs]: Remove r-forcats. [native-inputs]: Remove r-knitr. Ricardo Wurmus2020-03-121-3/+4
* gnu: r-catdap: Update to 1.3.5.•••* gnu/packages/cran.scm (r-catdap): Update to 1.3.5. Ricardo Wurmus2020-03-121-2/+2
* gnu: r-vim: Update to 5.1.1.•••* gnu/packages/cran.scm (r-vim): Update to 5.1.1. Ricardo Wurmus2020-03-121-2/+2
* gnu: r-vctrs: Update to 0.2.4.•••* gnu/packages/cran.scm (r-vctrs): Update to 0.2.4. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-121-2/+4
* gnu: r-cicero: Update to 1.4.4.•••* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.4. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-121-2/+4
* gnu: r-ggcyto: Update to 1.14.1.•••* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.14.1. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-03-121-2/+4
* gnu: r-mlinterfaces: Update to 1.66.5.•••* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.5. Ricardo Wurmus2020-03-121-2/+2
* gnu: r-qtl: Update to 1.46-2.•••* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.46-2. Ricardo Wurmus2020-03-121-2/+2
* gnu: Add hyperledger-iroha.•••This package was co-authored with Efraim Flashner <efraim@flashner.co.il> * gnu/packages/hyperledger.scm (hyperledger-iroha): New variable. Pierre Neidhardt2020-03-121-2/+79
* gnu: Add boost-1.69.•••* gnu/packages/boost.scm (boost-1.69): New hidden package. Efraim Flashner2020-03-121-1/+24
* gnu: Add hyperledger-iroha-ed25519.•••* gnu/packages/hyperledger.scm (hyperledger-iroha-ed25519): New variable. Pierre Neidhardt2020-03-121-1/+44
* gnu: grpc: Build shared libraries.•••* gnu/packages/machine-learning.scm (grpc)[outputs]: Add static. [arguments]: Copy configure-flags from cmake-build-system. Add custom phases 'configure-shared, 'install-shared-libraries and 'move-static-libs to build shared libs and move static libs to their own output. (tensorflow)[native-inputs]: Add grpc:static. Efraim Flashner2020-03-121-3/+40
* gnu: python2-jupyter-console: Build with python2.•••* gnu/packages/python-xyz.scm (python2-jupyter-console)[arguments]: Add python keyword, set to python-2. Efraim Flashner2020-03-121-2/+3
* gnu: python-jupyter-console: Specify python2 variant.•••* gnu/packages/python-xyz.scm (python-jupyter-console)[properties]: New field. Specify python2-jupyter-console as python2 variant. Efraim Flashner2020-03-121-0/+1
* services: mumi-service-type: Update to latest version of mumi.•••* gnu/services/web.scm (%mumi-activation): Create /var/mumi/db. (mumi-shepherd-services): Add service for mumi worker. Ricardo Wurmus2020-03-121-1/+13
* gnu: mumi: Update to 0.0.0-7.6653e2d.•••* gnu/packages/mail.scm (mumi): Update to 0.0.0-7.6653e2d. [inputs]: Add guile-sqlite3. Ricardo Wurmus2020-03-121-4/+5
* gnu: r-cairo: Update to 1.5-11.•••* gnu/packages/statistics.scm (r-cairo): Update to 1.5-11. Ricardo Wurmus2020-03-121-2/+2
* gnu: dune-istl: Build with suitesparse•••* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build additional solvers in dune-istl. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-121-0/+1
* gnu: Add dune-subgrid•••* gnu/packages/maths.scm (dune-subgrid): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-121-0/+43
* gnu: Add dune-uggrid.•••* gnu/packages/maths.scm (dune-uggrid): New variable. (dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so that the UGGrid class in dune-grid can be used by packages that have dune-grid as input. (dune-functions)[arguments]: Enable tests that previously weren't built as they require dune-uggrid. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-121-1/+52
* gnu: dune-*: set up MPI for tests•••* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl, dune-alugrid): [arguments]: correctly set up MPI instead of disabling tests that require MPI. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-121-100/+10
* inferior: Distinguish inferior exceptions.•••This avoids ambiguities when looking at a backtrace where the exception was actually thrown by an inferior in a very different context. * guix/inferior.scm (&inferior-exception): New condition type. (read-repl-response): Add optional 'inferior' parameter. Raise '&inferior-exception' instead of rethrowing to KEY when receiving an 'exception' message. (read-inferior-response): Pass INFERIOR to 'read-repl-response'. * tests/inferior.scm ("&inferior-exception"): New test. Ludovic Courtès2020-03-122-5/+29
* import: cpan: Gracefully handle missing projects.•••* guix/import/cpan.scm (cpan-fetch): Check whether 'json-fetch' returns #f. Ludovic Courtès2020-03-121-3/+3
* import: utils: Remove 'assoc-ref*'.•••* guix/import/utils.scm (assoc-ref*): Remove. Ludovic Courtès2020-03-121-9/+1
* import: pypi: Rewrite to use 'define-json-mapping'.•••* guix/import/pypi.scm (non-empty-string-or-false): New procedure. (<pypi-project>, <project-info>, <distribution>): New record types. (pypi-fetch): Call 'json->pypi-project'. (latest-source-release, latest-wheel-release): Use the new record accessors instead of 'assoc-ref*'. (pypi->guix-package, latest-release): Likewise. * tests/pypi.scm (test-json): Add mandatory fields. Ludovic Courtès2020-03-122-29/+95
* gnu: guile-next: Enable JIT on ARMv7.•••JIT support on ARMv7 is fixed by "guile-3.0-crash.patch". * gnu/packages/guile.scm (guile-3.0)[arguments]: Remove. Ludovic Courtès2020-03-121-9/+0
* gnu: Add virtualpg.•••* gnu/packages/geo.scm (virtualpg): New variable. Guillaume Le Vaillant2020-03-121-0/+26
* gnu: jgmenu: Update to 4.1.0.•••* gnu/packages/xdisorg.scm (jgmenu): Update to 4.1.0. Guillaume Le Vaillant2020-03-121-2/+2
* gnu: udiskie: Update to 2.1.0.•••* gnu/packages/freedesktop.scm (udiskie): Update to 2.1.0. Guillaume Le Vaillant2020-03-121-2/+2
* gnu: txr: Update to 233.•••* gnu/packages/lisp.scm (txr): Update to 233. Guillaume Le Vaillant2020-03-121-2/+2
* doc: Fix description for "guix package -A".•••* doc/guix.texi (Invoking guix package): Fix description for "guix package -A". Danny Milosavljevic2020-03-121-1/+1
* gnu: python2-ipython: Fix build.•••* gnu/packages/python-xyz.scm (python2-ipython)[arguments]: Adjust skipped tests. Efraim Flashner2020-03-121-2/+2
* gnu: xlockmore: Update to 5.62.•••* gnu/packages/xdisorg.scm (xlockmore): Update to 5.62. Tobias Geerinckx-Rice2020-03-121-2/+2
* gnu: xlockmore: Use HTTPS home page.•••* gnu/packages/xdisorg.scm (xlockmore)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-121-1/+1
* gnu: mame: Use HTTPS home page.•••* gnu/packages/emulators.scm (mame)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-121-1/+1
* gnu: dosbox: Use HTTPS home page.•••* gnu/packages/emulators.scm (dosbox)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-121-1/+1
* gnu: Add gitless.•••* gnu/packages/version-control.scm (gitless): New public variable. Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr> Tobias Geerinckx-Rice2020-03-121-0/+70
* gnu: faust: Use HTTPS home page.•••* gnu/packages/audio.scm (faust)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-121-1/+1
* gnu: rsound: Use HTTPS home page.•••* gnu/packages/audio.scm (rsound)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-121-1/+1
* gnu: libgme: Update to 0.6.3.•••* gnu/packages/music.scm (libgme): Update to 0.6.3. Tobias Geerinckx-Rice2020-03-121-3/+3
* gnu: xmobar: Update to 0.33.•••* gnu/packages/wm.scm (xmobar): Update to 0.33. Tobias Geerinckx-Rice2020-03-121-2/+2
* gnu: gptfdisk: Use HTTPS home page.•••* gnu/packages/disk.scm (gptfdisk)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-121-1/+1
* gnu: ephoto: Update source and home page URIs.•••* gnu/packages/enlightenment.scm (ephoto)[source]: Remove dead URI. [home-page]: Follow (HTTPS) redirection. Tobias Geerinckx-Rice2020-03-121-10/+7
* gnu: s6: Update to 2.9.1.0.•••* gnu/packages/skarnet.scm (s6): Update to 2.9.1.0. Tobias Geerinckx-Rice2020-03-121-2/+2
* gnu: simple-scan: Update to 3.36.0.•••* gnu/packages/gnome.scm (simple-scan): Update to 3.36.0. Tobias Geerinckx-Rice2020-03-121-2/+2
* gnu: picprog: Use HTTPS home page.•••* gnu/packages/embedded.scm (picprog)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-121-1/+1
* gnu: java-snappy: Don't use unstable tarball.•••* gnu/packages/java-compression.scm (java-snappy)[source]: Use GIT-FETCH and GIT-FILE-NAME. [arguments]: Add ‘make-git-checkout-writable’ phase. Tobias Geerinckx-Rice2020-03-121-8/+14
* gnu: java-snappy: Update to 1.1.7.3.•••* gnu/packages/java-compression.scm (java-snappy): Update to 1.1.7.3. Tobias Geerinckx-Rice2020-03-121-3/+3
* gnu: Borg: Update to 1.1.11.•••* gnu/packages/backup.scm (borg): Update to 1.1.11. Leo Famulari2020-03-111-2/+3