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* gnu: Add p4est.•••* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables. Eric Bavier2015-06-291-0/+46
* gnu: Add ScaLAPACK.•••* gnu/packages/maths.scm (scalapack): New variable. Eric Bavier2015-06-291-0/+29
* gnu: scotch, pt-scotch: Build esmumps libraries.•••* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps phase. Install esmumps libraries and headers in 'install phase. (pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add make parallelism. Eric Bavier2015-06-291-3/+20
* gnu: scotch, pt-scotch: Use modify-phases.•••* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases. Eric Bavier2015-06-291-39/+31
* gnu: Update scotch to 6.0.4.•••* gnu/packages/maths.scm (scotch): Update to 6.0.4. [arguments]: Add -fPIC to CFLAGS. * gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a new set of test fixes. * gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier2015-06-294-132/+29
* gnu: openmpi: Upgrade to 1.8.5.•••* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5. [native-inputs]: Add perl. [arguments]: Add configure flags for thread support. Eric Bavier2015-06-291-8/+11
* gnu: hwloc: Move numactl to inputs.•••* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here... [inputs]: ...to here. [arguments]: New 'refine-libnuma' phase. Eric Bavier2015-06-291-3/+13
* gnu: hwloc: Upgrade to 1.10.1.•••* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch. * gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1. [source]: Use patch. [propagated-inputs]: Remove libpci. [inputs]: Add libpciaccess. * gnu-system.am (dist_patch_DATA): Add patch. Eric Bavier2015-06-293-13/+24
* gnu: python-mccabe: Fix license field.•••* gnu/packages/python.scm (python-mccabe)[license]: 'expat' -> 'license:expat'. Eric Bavier2015-06-291-1/+1
* gnu: Add python-flake8.•••* gnu/packages/python.scm (python-flake8, python2-flake8): New variables. Cyril Roelandt2015-06-301-0/+70
* gnu: Add python-mccabe.•••* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables. Cyril Roelandt2015-06-301-0/+27
* gnu: Add python-pyflakes.•••* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables. Cyril Roelandt2015-06-301-0/+24
* gnu: Add python-pep8.•••* gnu/packages/python.scm (python-pep8, python2-pep8): New variables. Cyril Roelandt2015-06-301-0/+27
* doc: Add 'guix environment' examples.•••* doc/environment-gdb.scm: New file. * doc.am (EXTRA_DIST): Add it. * doc/guix.texi (Invoking guix environment): Clarify wording of the first example. Add a --ad-hoc example upfront. Add an example for '-e', and one for '-l'. Ludovic Courtès2015-06-293-4/+45
* gnu: withershins: Use new "libiberty" package.•••* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty". [arguments]: Simplify "find-libiberty" phase. Ricardo Wurmus2015-06-291-14/+6
* gnu: Add libiberty.•••* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables. Ricardo Wurmus2015-06-291-0/+35
* gnu: r: Update to 3.2.1.•••* gnu/packages/statistics.scm (r): Update to 3.2.1. * gnu/packages/patches/r-fix-15899.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. Ricardo Wurmus2015-06-293-21/+2
* gnu: Add Blast+.•••* gnu/packages/bioinformatics.scm (blast+): New variable. Ricardo Wurmus2015-06-291-0/+148
* gnu: global: Update to 6.5.•••* gnu/packages/code.scm (global): Update to 6.5. Ludovic Courtès2015-06-291-2/+2
* gnu: help2man: Update to 1.47.1.•••* gnu/packages/man.scm (help2man): Update to 1.47.1. Ludovic Courtès2015-06-291-2/+2
* gnu: parallel: Update to 20150622.•••* gnu/packages/parallel.scm (parallel): Update to 20150622. Ludovic Courtès2015-06-291-2/+2
* gnu: screen: Update to 4.3.1.•••* gnu/packages/screen.scm (screen): Update to 4.3.1. Ludovic Courtès2015-06-291-2/+2
* gnu: texinfo: Add version 6.0.•••* gnu/packages/texinfo.scm (texinfo-6): New variable. Ludovic Courtès2015-06-291-1/+13
* gnu: gcc-4.8: Update to 4.8.5.•••* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5. Ludovic Courtès2015-06-291-2/+2
* doc: Add quote about running a monadic value.•••* doc/guix.texi (The Store Monad): Add funny quote about "running" a monadic value. Ludovic Courtès2015-06-291-2/+7
* gnu: Add plink.•••* gnu/packages/bioinformatics.scm (plink): New variable. * gnu/packages/patches/plink-1.07-unclobber-i.patch: New file. Ricardo Wurmus2015-06-292-0/+122
* gnu: synergy: Upgrade to 1.7.3.•••* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3 [source]: Use github for source download. Add snippet to remove bundled source and binaries. [inputs]: Add openssl. [arguments]: Copy example configuration files to out during 'install phase. Eric Bavier2015-06-281-14/+36
* gnu: Add sfarkxtc.•••* gnu/packages/compression.scm (sfarkxtc): New variable. Ricardo Wurmus2015-06-281-0/+33
* gnu: Add sfarklib.•••* gnu/packages/compression.scm (sfarklib): New variable. Ricardo Wurmus2015-06-281-1/+37
* gnu: Add Guitarix.•••* gnu/packages/audio.scm (guitarix): New variable. Ricardo Wurmus2015-06-281-0/+61
* gnu: ardour: Update to 4.1.•••* gnu/packages/audio.scm (ardour): Update to 4.1. Ricardo Wurmus2015-06-281-4/+5
* gnu: Add libtar.•••* gnu/packages/compression.scm (libtar): New variable. Ricardo Wurmus2015-06-281-0/+21
* Add Claes Wallin to 'AUTHORS'.Alex Kost2015-06-271-0/+1
* gnu: Add pv.••• * gnu/package/pv.scm (pv): New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Alex Kost <alezost@gmail.com> Claes Wallin2015-06-272-0/+47
* gnu: Refer to 'gcc' instead of 'gcc-4.9'.•••* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper, libstdc++, gcc-final): Refer to GCC instead of GCC-4.9. * gnu/packages/cross-base.scm (%xgcc): New variable. (cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9. * gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9. * gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc, %gcc-static, %gcc-stripped): Likewise. Ludovic Courtès2015-06-264-21/+26
* gnu: youtube-dl: Update to 2015.06.25.•••* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25. Ludovic Courtès2015-06-261-2/+2
* gnu: Add python2-fastlmm.•••* gnu/packages/python.scm (python2-fastlmm): New variable. Ricardo Wurmus2015-06-261-0/+36
* gnu: Add python2-pysnptools.•••* gnu/packages/python.scm (python2-pysnptools): New variable. Ricardo Wurmus2015-06-261-0/+33
* emacs: Add 'guix-root-map'.•••* emacs/guix-base.el (guix-define-buffer-type): Move common key bindings from here... (guix-root-map): ... to here. New variable. * emacs/guix-info.el (guix-info-mode-map): Use it. * emacs/guix-list.el (guix-list-mode-map): Use it. * doc/emacs.texi (Emacs Keymaps): Document it. Alex Kost2015-06-264-11/+19
* gnu: nettle: Disable ifunc method of library initialization.•••* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method' phase. Mark H Weaver2015-06-251-5/+18
* gnu: Replace versioned gfortran inputs with just "gfortran".•••* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with "gfortran". * gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise. * gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu) (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise. (octave)[native-inputs]: Likewise. (gmsh)[propagated-inputs]: Likewise. * gnu/packages/mpi.scm (openmpi)[inputs]: Likewise. * gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise. * gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with "gfortran". Ricardo Wurmus2015-06-256-16/+16
* gnu: Add default GCC and default gfortran.•••* gnu/packages/gcc.scm (gcc): New variable. * gnu/packages/gcc.scm (gfortran): New variable. Ricardo Wurmus2015-06-251-0/+5
* gnu: gstreamer: Add search path specification for 'GST_PLUGIN_SYSTEM_PATH'.•••This reverts commit e53fc0c8a, which add it wrongly to gst-plugins-base. * gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field. (gst-plugins-base)[native-search-paths]: Remove. 宋文武2015-06-251-4/+4
* import: pypi: Detect inputs.•••* guix/import/pypi.scm (python->package-name, maybe-inputs, compute-inputs, guess-requirements): New procedures. * guix/import/pypi.scm (guix-hash-url): Now takes a filename instead of an URL as input. * guix/import/pypi.scm (make-pypi-sexp): Now tries to generate the inputs automagically. * tests/pypi.scm: Update the test. Cyril Roelandt2015-06-242-44/+158
* linux-initrd: Produce cpio archives with zeroed timestamps, etc.•••* guix/cpio.scm (file->cpio-header*): New procedure. * gnu/build/linux-initrd.scm (write-cpio-archive): Add #:file->header argument to 'cpio:write-cpio-archive'. Ludovic Courtès2015-06-242-1/+15
* linux-initrd: Populate cpio archives in a deterministic order.•••* gnu/build/linux-initrd.scm (write-cpio-archive)[files]: Use 'sort' instead of 'reverse'. Ludovic Courtès2015-06-241-15/+16
* linux-initrd: Use (guix cpio) instead of GNU cpio.•••* gnu/build/linux-initrd.scm (write-cpio-archive): Remove 'open-pipe*' and related calls. Compute list of files in 'files' variable. Use 'cpio:write-cpio-archive'. Remove #:cpio parameter. (build-initrd): Remove #:cpio parameter. * gnu/system/linux-initrd.scm (expression->initrd): Likewise, and adjust BUILDER accordingly. Add (guix cpio) to #:modules. Ludovic Courtès2015-06-242-41/+37
* Add (guix cpio).•••* guix/cpio.scm, tests/cpio.scm: New files. * Makefile.am (MODULES): Add guix/cpio.scm. (SCM_TESTS): Add tests/cpio.scm. Ludovic Courtès2015-06-243-0/+326
* tests: Move 'file=?' to (guix tests).•••* tests/nar.scm (file-tree-equal?)[file=?]: Move to... * guix/tests.scm (file=?): ... here. New procedure. Ludovic Courtès2015-06-242-11/+15
* gnu: pius: Depend on GnuPG 2.0 rather than 2.1.•••* gnu/packages/gnupg.scm (pius)[inputs]: Change GNUPG to GNUPG-2.0. Ludovic Courtès2015-06-241-2/+2