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* gnu: enlightenment: Update to 0.19.5.•••* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.5. Efraim Flashner2015-07-041-3/+3
* gnu: emotion-generic-loaders: Update to 1.14.0.•••* gnu/packages/enlightenment.scm (emotion-generic-loaders): Update to 1.14.0. Efraim Flashner2015-07-041-3/+3
* gnu: evas-generic-loaders: Update to 1.14.0.•••* gnu/packages/enlightenment.scm (evas-generic-loaders): Update to 1.14.0. Efraim Flashner2015-07-041-2/+2
* gnu: elementary: Update to 1.14.2.•••* gnu/packages/enlightenment.scm (elementary): Update to 1.14.2. Efraim Flashner2015-07-041-3/+3
* gnu: efl: Update to 1.14.2.•••* gnu/packages/enlightenment.scm (efl): Update to 1.14.2. Efraim Flashner2015-07-041-3/+3
* gnu: Add ruby-rake-compiler.•••* gnu/packages/ruby.scm (ruby-rake-compiler): New variable. pjotrp2015-07-041-0/+30
* gnu: eigen: Update to 3.2.5.•••* gnu/packages/algebra.scm (eigen): Update to 3.2.5. Ricardo Wurmus2015-07-041-2/+2
* gnu: icecat: Fix CVE-2015-{2722,2724,2728,2733,2735,2736,2738,2739,2740,2743}.•••* gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch, gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2735.patch, gnu/packages/patches/icecat-CVE-2015-2736.patch, gnu/packages/patches/icecat-CVE-2015-2738.patch, gnu/packages/patches/icecat-CVE-2015-2739.patch, gnu/packages/patches/icecat-CVE-2015-2740.patch, gnu/packages/patches/icecat-CVE-2015-2743.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patches. Mark H Weaver2015-07-0418-1/+1430
* Add '.mailmap'.•••* .mailmap: New file. Alex Kost2015-07-041-0/+27
* Clean up 'THANKS' and 'AUTHORS'.•••* THANKS: Add Konrad Hinsen, Cyprien Nicolas, Yakkala Yagnesh Raghava and Alexander Shendi. Remove Federico Beffa, Marek Benc, John Darrington, rekado, Cyrill Schenkel and Andy Wingo because they are placed in AUTHORS. Move Amirouche Boubekki and Alex Kost to ... * AUTHORS: ... here. Add Arne Babenhauserheide, Ian Denhardt, Kevin Lemonnier, Mathieu Lirzin, Pierre-Antoine Rault and Ben Woodcroft. Fix some names and emails. Alex Kost2015-07-042-16/+20
* gnu: unrtf: Fix download location.•••* gnu/packages/unrtf.scm (unrtf): Fix download location. Andreas Enge2015-07-031-2/+3
* gnu: r: Replace "atlas" with "openblas".•••* gnu/packages/statistics.scm (r)[inputs]: Replace "atlas" with "openblas". Ricardo Wurmus2015-07-031-2/+2
* gnu: gnutls: Move man3 pages to "doc" output.•••* gnu/packages/gnutls.scm (gnutls)[arguments]: Add #:phases. Ludovic Courtès2015-07-031-2/+18
* gnu: qt-4: Remove reference from "out" to "doc".•••* gnu/packages/qt.scm (qt-4)[arguments]: Remove '-docdir' configure flag. Add 'move-doc' phase. Ludovic Courtès2015-07-031-2/+20
* gnu: qt-4: Use a more standard directory layout.•••* gnu/packages/qt.scm (qt-4)[arguments]: Pass -datadir, -importdir, -plugindir, and -translationdir. Ludovic Courtès2015-07-031-0/+8
* gnu: qt-4: Use 'modify-phases'.•••* gnu/packages/qt.scm (qt-4)[arguments]: Use 'modify-phases' instead of 'alist-replace'. Ludovic Courtès2015-07-031-3/+3
* gnu: cups-filter: Install backends and filters under lib/cups.•••This ensures that they are stripped during the 'strip' phase, thereby removing references to GCC and linux-libre-headers that would otherwise be found in debugging symbols. * gnu/packages/cups.scm (cups-filters)[source]: Change pkgbackenddir and pkgfilterdir to $(PREFIX)/lib/cups/{filter,backend}. (cups)[arguments]: Adjust accordingly. Ludovic Courtès2015-07-031-7/+11
* gnu: mysql: Remove unnecessary binaries.•••This saves ~42 MiB on x86_64. * gnu/packages/databases.scm (mysql)[arguments]: Add 'remove-extra-binaries' phase. Ludovic Courtès2015-07-031-0/+10
* gnu: mysql: Strip references and GCC and other build-time dependencies.•••* gnu/packages/databases.scm (mysql)[arguments]: Add 'strip-extra-references' phase. Ludovic Courtès2015-07-031-1/+13
* gnu: mutt: Don't retain reference to GCC.•••* gnu/packages/patches/mutt-store-references.patch: New file. * gnu/packages/mail.scm (mutt)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it. Ludovic Courtès2015-07-033-1/+20
* gnu: ghostscript: Add "doc" output.•••* gnu/packages/ghostscript.scm (ghostscript)[source](snippet): New field. [outputs]: New field. [arguments]: Add 'remove-doc-reference' phase. Ludovic Courtès2015-07-031-1/+16
* derivations: Add #:substitutable?, distinguished from #:local-build?.•••Fixes <http://bugs.gnu.org/18747>. * guix/derivations.scm (substitutable-derivation?): Rewrite to check for "allowSubstitutes". (derivation): Add #:substitutable? parameter. [user+system-env-vars]: Honor it. (build-expression->derivation): Add #:substitutable? and honor it. * guix/gexp.scm (gexp->derivation): Likewise. * tests/derivations.scm ("derivation-prerequisites-to-build and substitutes, non-substitutable build"): Use #:substitutable? instead of #:local-build?. ("substitutable-derivation?", "derivation-prerequisites-to-build and substitutes, local build"): New tests. * guix/download.scm (url-fetch): Adjust comment. * guix/git-download.scm (git-fetch): Likewise. * guix/build-system/gnu.scm (gnu-build, gnu-cross-build): Use #:substitutable? instead of #:local-build?. * doc/guix.texi (Derivations, G-Expressions): Adjust accordingly. Ludovic Courtès2015-07-037-32/+76
* Merge branch 'nix'.•••This is a squashed commit of the following: commit 0dccab9f417b406f5d4aedc81900fc7b2f16c9f6 Author: Eelco Dolstra <eelco.dolstra@logicblox.com> Date: Thu Jul 2 00:30:16 2015 +0200 Typo commit 2cd28517b13524c242c7758783b0b2d8250fdded Author: Ludovic Courtès <ludo@gnu.org> Date: Wed Jul 1 14:56:34 2015 +0200 Preserve supplementary groups of build users The following patch is an attempt to address this bug (see <http://bugs.gnu.org/18994>) by preserving the supplementary groups of build users in the build environment. In practice, I would expect that supplementary groups would contain only one or two groups: the build users group, and possibly the “kvm” group. [Changed &at(0) to data() and removed tabs - Eelco] commit 6e38685ef65284093df79ebe7378bac33b0e7e5d Author: Eelco Dolstra <eelco.dolstra@logicblox.com> Date: Tue Jun 30 21:41:26 2015 +0200 GC: Handle ENOSPC creating/moving to the trash directory Issue #564. commit 5e0a9ae2e25a1016389f4893a6ed6682aadcf51d Author: Eelco Dolstra <eelco.dolstra@logicblox.com> Date: Mon Jun 22 15:54:55 2015 +0200 Use posix_fallocate to create /nix/var/nix/db/reserved commit 4e5ab98d6d14f8b0e3bd1d77b2f4f2354e7a49a8 Author: Eelco Dolstra <eelco.dolstra@logicblox.com> Date: Mon Jun 22 15:47:40 2015 +0200 Make /nix/var/nix/db/reserved bigger Issue #564. commit 60bda60fc06135aa97a93301b1a9e2270768f5b3 Author: Eelco Dolstra <eelco.dolstra@logicblox.com> Date: Wed Jun 10 16:17:06 2015 +0200 Export outputPaths function This is useful for the new hydra-queue-runner. commit 5dfea34048aa8541f20aeb2fbcd163561b609a49 Author: Eelco Dolstra <eelco.dolstra@logicblox.com> Date: Thu Jul 2 22:51:33 2015 +0200 Use std::vector::data() commit 2459458bc8257734ca78cb7a2db3df20bd730ec0 Author: Eelco Dolstra <eelco.dolstra@logicblox.com> Date: Thu Jun 4 16:04:41 2015 +0200 Allow substitutes for builds that have preferLocalBuild set Not substituting builds with "preferLocalBuild = true" was a bad idea, because it didn't take the cost of dependencies into account. For instance, if we can't substitute a fetchgit call, then we have to download/build git and all its dependencies. Partially reverts 5558652709f27e8a887580b77b93c705659d7a4b and adds a new derivation attribute "allowSubstitutes" to specify whether a derivation may be substituted. Ludovic Courtès2015-07-0311-54/+93
* scripts: environment: Return the exit status of the command.•••* guix/scripts/environment.scm (guix-environment): Return the exit status of the command. Cyril Roelandt2015-07-021-1/+1
* gnu: gnupg: Enable TLS support.•••* gnu/packages/gnupg.scm (gnupg)[native-inputs]: Add pkg-config. [inputs]: Add gnutls. (gnupg-2.0, gnupg-1)[native-inputs]: Override inherited value to be '(). Mark H Weaver2015-07-021-0/+6
* gnu: gnupg: Update to 2.1.6.•••* gnu/packages/gnupg.scm (gnupg): Update to 2.1.6. Mark H Weaver2015-07-021-2/+2
* gnu: Add WarpedLMM.•••* gnu/packages/bioinformatics.scm (python2-warpedlmm): New variable. Ricardo Wurmus2015-07-021-0/+47
* gnu: r: Set default pager.•••* gnu/packages/statistics.scm (r)[arguments]: Add phase "set-default-pager" to avoid "false" as a default pager. Ricardo Wurmus2015-07-021-5/+10
* environment: Define 'GUIX_ENVIRONMENT'.•••* guix/scripts/environment.scm (create-environment): Define 'GUIX_ENVIRONMENT'. * doc/guix.texi (Invoking guix environment): Document it. * gnu/system/shadow.scm (default-skeletons): Adjust 'PS1' depending on whether 'GUIX_ENVIRONMENT' is defined. Ludovic Courtès2015-07-013-2/+25
* doc: Mention .bashrc vs. .bash_profile for 'guix environment'.•••* doc/guix.texi (Invoking guix environment): Add footnote about .bashrc vs. .bash_profile. Ludovic Courtès2015-07-011-1/+9
* environment: Improve error reporting for '-l'.•••This fixes two problems: 1. Load errors would print an ugly backtrace. 2. When FILE was an absolute name, 'load' was passed an incorrect file name. * guix/scripts/environment.scm (options/resolve-packages): Use 'load*' instead of 'load'. Ludovic Courtès2015-07-011-1/+1
* environment: For --ad-hoc, allow users to specify an output.•••* guix/scripts/environment.scm (package+propagated-inputs): Add 'output' parameter. Use it in return value. (options/resolve-packages): Use 'append-map' instead of 'map'. For 'load' and 'expression', return all the outputs of the resulting package. For 'package', use 'specification->package+output' instead of 'specification->package'. (guix-environment): Adjust uses of PACKAGES accordingly. * doc/guix.texi (Invoking guix environment): Document it. * tests/guix-environment.sh: Add test for --ad-hoc guile-bootstrap:out. Ludovic Courtès2015-07-013-16/+39
* environment: Add --system.•••* guix/scripts/environment.scm (show-help, %options): Add -s/--system. (%default-options): Add 'system' pair. (guix-environment): Pass 'system' value from OPTS to 'lower-inputs'. * doc/guix.texi (Invoking guix environment): Document it. Ludovic Courtès2015-07-012-1/+12
* environment: Add only the specified outputs of the dependencies.•••Before that, 'guix environment guile' (for instance) would define environment variables that would refer to the "include" output of Bash, the "debug" output of libgc, etc., even though these are not listed as inputs in the recipe of 'guile'. * guix/gexp.scm (lower-inputs): Export. * guix/scripts/environment.scm (evaluate-input-search-paths): Remove 'derivations' parameter; add 'search-paths'. Expect 'inputs' to be a list of tuples. Adjust callers. (create-environment): Remove 'derivations' parameter; add 'search-paths'. (show-search-paths): Likewise. (package+propagated-inputs): New procedure. (packages->transitive-inputs, packages+propagated-inputs): Remove. (build-inputs): Expect INPUTS to be a list of derivation tuples. (guix-environment): Compute INPUTS using 'package+propagated-inputs', 'package->bag', and 'bag-transitive-inputs'. Move 'run-with-store' higher. * tests/guix-environment.sh: Add test with FINDUTILS-BOOT0. Ludovic Courtès2015-07-013-78/+101
* tests: Add tests for 'guix environment'.•••* tests/guix-environment.sh: New file. * Makefile.am (SH_TESTS): Add it. Ludovic Courtès2015-07-012-0/+62
* gnu: powertabeditor: Replace "gcc" with "libiberty".•••* gnu/packages/music.scm (powertabeditor)[inputs]: Replace "gcc" with "libiberty". Ricardo Wurmus2015-07-011-2/+2
* gnu: Add Hydrogen.•••* gnu/packages/music.scm (hydrogen): New variable. Ricardo Wurmus2015-07-011-0/+70
* gnu: linux-libre: Update to 4.1.1.•••* gnu/packages/linux.scm (linux-libre): Update to 4.1.1. Mark H Weaver2015-07-011-2/+2
* gnu: git: Add inputs for send-email.•••* gnu/packages/version-control.scm (package-transitive-propagated-labels*) (package-propagated-input-refs): New procedures. (git)[inputs]: Add perl-authen-sasl, perl-net-smtp-ssl, and perl-io-socket-ssl. [outputs]: Add send-email output. [arguments]: Add #:modules argument with srfi-1. In 'split phase, wrap git-send-email. Eric Bavier2015-06-301-3/+46
* gnu: Add perl-authen-sasl.•••* gnu/packages/web.scm (perl-authen-sasl): New variable. Eric Bavier2015-06-301-0/+21
* gnu: Add perl-gssapi.•••* gnu/packages/web.scm (perl-gssapi): New variable. Eric Bavier2015-06-301-0/+24
* gnu: Add perl-net-smtp-ssl.•••* gnu/packages/web.scm (perl-net-smtp-ssl): New variable. Eric Bavier2015-06-301-0/+20
* gnu: curl: Disable test that fails on Hydra.•••* gnu/packages/curl.scm (arguments): Disable test 1510. Mark H Weaver2015-06-301-0/+19
* gnu: curl: Update to 7.43.0.•••* gnu/packages/curl.scm (curl): Update to 7.43.0. Mark H Weaver2015-06-301-2/+2
* gnu: Add deal.II.•••* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables. * gnu/packages/patches/dealii-p4est-interface.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier2015-06-293-1/+146
* gnu: Add SLEPc.•••* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi) (slepc-complex-openmpi): New variables. Eric Bavier2015-06-291-0/+100
* gnu: Add arpack-ng-openmpi.•••* gnu/packages/maths.scm (arpack-ng-openmpi): New variable. Eric Bavier2015-06-291-0/+9
* gnu: petsc: Upgrade to 3.6.0.•••* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0. * gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch. * gnu-system.am (dist_patch_DATA): Remove it. Eric Bavier2015-06-293-32/+10
* gnu: Add MUMPS.•••* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi) (mumps-metis-openmpi): New variables. * gnu/packages/patches/mumps-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. Eric Bavier2015-06-293-0/+183
* gnu: Add METIS.•••* gnu/packages/maths.scm (metis): New variable. Eric Bavier2015-06-291-0/+30
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