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* gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here. Ricardo Wurmus2019-03-062-32/+32
* gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here. Ricardo Wurmus2019-03-062-31/+31
* gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here. Ricardo Wurmus2019-03-062-31/+31
* gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconduct...•••* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): ...to here. Ricardo Wurmus2019-03-062-31/+31
* gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move from here... * gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to here. Ricardo Wurmus2019-03-062-32/+32
* gnu: r-geneplotter: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-geneplotter): Move from here... * gnu/packages/bioconductor.scm (r-geneplotter): ...to here. Ricardo Wurmus2019-03-062-26/+26
* gnu: Add guile-stis-parser.•••* gnu/packages/guile-xyz.scm (guile-stis-parser): New variable. Ricardo Wurmus2019-03-061-0/+40
* gnu: r-copynumber: Move to (gnu packages bioconductor).•••* gnu/packages/bioinformatics.scm (r-copynumber): Move from here... * gnu/packages/bioconductor.scm (r-copynumber): ...to here. Ricardo Wurmus2019-03-062-23/+23
* gnu: Update copyright headers.•••This is a follow-up to commit 1fe9a36173335b559c695357bc8d884f1d4b144a. * gnu/packages/bioconductor.scm: Update copyright header to account for moved package. Ricardo Wurmus2019-03-061-2/+2
* gnu: font-gnu-unifont: Update to 12.0.01.•••* gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.0.01. Efraim Flashner2019-03-061-3/+3
* gnu: cabextract: Don't use NAME in source URI.•••* gnu/packages/compression.scm (cabextract)[source]: Hard-code NAME. Tobias Geerinckx-Rice2019-03-061-1/+1
* gnu: cabextract: Update to 1.9.1.•••* gnu/packages/compression.scm (cabextract): Update to 1.9.1. Tobias Geerinckx-Rice2019-03-061-2/+2
* gnu: lcov: Update to 1.14.•••* gnu/packages/code.scm (lcov): Update to 1.14. Tobias Geerinckx-Rice2019-03-061-3/+3
* gnu: python-mako: Update home page.•••* gnu/packages/python-xyz.scm (python-mako)[home-page]: Use HTTPS. Marius Bakke2019-03-061-1/+1
* gnu: fuseiso: Fix typo.•••* gnu/packages/linux.scm (fuseiso)[synopsis]: s/imsages/images. Marius Bakke2019-03-061-1/+1
* gnu: valgrind: Add download mirror.•••* gnu/packages/valgrind.scm (valgrind)[source](uri): Add mirror. Marius Bakke2019-03-061-7/+9
* gnu: bismark: Update to 0.20.1.•••* gnu/packages/bioinformatics.scm (bismark): Update to 0.20.1. [source]: Remove obsolete snippet. [arguments]: Add build phase "replace-plotly.js" and add requried modules; adjust "install" phase. [inputs]: Add perl-carp and perl-getopt-long. [native-inputs]: Add plotly.js and uglify-js. Ricardo Wurmus2019-03-061-14/+34
* gnu: Add fuseiso.•••* gnu/packages/linux.scm (fuseiso): New variable. Pierre Neidhardt2019-03-061-0/+26
* gnu: Add r-scde.•••* gnu/packages/bioinformatics.scm (r-scde): New variable. Ricardo Wurmus2019-03-061-0/+42
* gnu: Add bowtie1.•••* gnu/packages/bioinformatics.scm (bowtie1): New variable. Ricardo Wurmus2019-03-061-0/+40
* gnu: octave, octave-cli: Update to 5.1.0.•••* gnu/packages/maths.scm (octave, octave-cli): Update to 5.1.0. Kei Kebreau2019-03-061-2/+2
* gnu: crawl, crawl-tiles: Update to 0.23.1.•••* gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.23.1. [native-inputs]: Add python and python-pyyaml. [arguments]: Add 'patch-python' phase, modify the 'check' phase and move the 'check' phase back after the 'build' phase. Kei Kebreau2019-03-061-7/+12
* gnu: perl-czplib: Fix installation directory.•••* gnu/packages/perl.scm (perl-czplib)[arguments]: Fix installation directory. Ricardo Wurmus2019-03-061-3/+2
* gnu: Add guile-studio.•••* gnu/packages/guile-xyz.scm (guile-studio): New variable. Ricardo Wurmus2019-03-061-0/+57
* gnu: Add genrich.•••* gnu/packages/bioinformatics.scm (genrich): New variable. Ricardo Wurmus2019-03-061-0/+32
* gnu: r-dnacopy: Remove duplicate definition.•••Reported by Christopher Baines <mail@cbaines.net>. * gnu/packages/bioinformatics.scm (r-dnacopy): Remove variable. Ricardo Wurmus2019-03-061-22/+0
* gnu: Add r-org-dr-eg-db.•••* gnu/packages/bioconductor.scm (r-org-dr-eg-db): New variable. Ricardo Wurmus2019-03-061-0/+26
* gnu: java-eclipse-jdt-core: Update to 3.16.0.•••* gnu/packages/java.scm (java-eclipse-jdt-core): Update to 3.16.0. Ricardo Wurmus2019-03-061-2/+2
* gnu: java-eclipse-core-resources: Update to 3.13.200.•••* gnu/packages/java.scm (java-eclipse-core-resources): Update to 3.13.200. Ricardo Wurmus2019-03-061-2/+2
* gnu: java-eclipse-core-runtime: Update to 3.15.100.•••* gnu/packages/java.scm (java-eclipse-core-runtime): Update to 3.15.100. Ricardo Wurmus2019-03-061-2/+2
* gnu: java-eclipse-equinox-common: Update to 3.10.200.•••* gnu/packages/java.scm (java-eclipse-equinox-common): Update to 3.10.200. Ricardo Wurmus2019-03-061-2/+2
* gnu: shaderc: Update to 2018.0.•••* gnu/packages/vulkan.scm (shaderc): Update to 2018.0. Rutger Helling2019-03-061-68/+66
* gnu: spirv-tools: Update to 2019.1.•••* gnu/packages/vulkan.scm (spirv-tools): Update to 2019.1. [arguments]: Add 'fixgcc7 phase. [native-inputs]: Add gcc-7. Rutger Helling2019-03-061-33/+37
* gnu: spirv-headers: Update to commit 8bea0a2.•••* gnu/packages/vulkan.scm (spirv-headers): Update to commit 8bea0a2. Rutger Helling2019-03-061-3/+3
* gnu: glslang: Update to 7.11.3113.•••* gnu/packages/vulkan.scm (glslang): Update to 7.11.3113. Rutger Helling2019-03-061-39/+35
* gnu: MPD: Update to 0.21.5.•••* gnu/packages/mpd.scm (mpd): Update to 0.21.5. Leo Famulari2019-03-051-2/+2
* gnu: FFmpeg: Build with AV1 support.•••* gnu/packages/video.scm (ffmpeg)[inputs]: Add libaom. [arguments]: Pass '--enable-libaom' to #:configure-flags. (ffmpeg-3.4)[inputs, arguments]: Filter out libaom. Arne Babenhauserheide2019-03-051-1/+9
* gnu: Add libaom.•••* gnu/packages/video.scm (libaom): New variable. Co-authored-by: Leo Famulari <leo@famulari.name> Arne Babenhauserheide2019-03-051-0/+38
* gnu: you-get: Update to 0.4.1256.•••* gnu/packages/video.scm (you-get): Update to 0.4.1256. Tobias Geerinckx-Rice2019-03-061-2/+2
* gnu: youtube-dl: Update to 2019.03.01.•••* gnu/packages/video.scm (youtube-dl): Update to 2019.03.01. Tobias Geerinckx-Rice2019-03-061-2/+2
* gnu: plantuml: Update to 1.2019.2.•••* gnu/packages/uml.scm (plantuml): Update to 1.2019.2. Tobias Geerinckx-Rice2019-03-061-3/+4
* gnu: xinit: Update to 1.4.1.•••* gnu/packages/xorg.scm (xinit): Update to 1.4.1. Tobias Geerinckx-Rice2019-03-061-2/+2
* gnu: lxc: Fix documentation directory.•••* gnu/packages/virtualization.scm (lxc)[arguments]: Set ‘--docdir’ in #:configure-flags. Tobias Geerinckx-Rice2019-03-061-3/+5
* gnu: lxc: Update to 3.1.0.•••* gnu/packages/virtualization.scm (lxc): Update to 3.1.0. Tobias Geerinckx-Rice2019-03-061-2/+2
* gnu: dav1d: Update to 0.2.0.•••* gnu/packages/video.scm (dav1d): Update to 0.2.0. [source]: Add alternate URL. Leo Famulari2019-03-051-4/+9
* artwork: Update snapshot to b975164.•••* gnu/artwork.scm (%artwork-repository): Update to b975164. Ludovic Courtès2019-03-051-2/+2
* gnu: singularity: Leave PATH unchanged.•••Previously 'singularity help' & co. would all fail on Guix System because Coreutils, grep, etc. were not found in $PATH. * gnu/packages/linux.scm (singularity)[source](snippet): Remove "PATH" setting from 'bin/singularity.in'. Ludovic Courtès2019-03-051-0/+8
* gnu: singularity: Patch 'Makefile.in' in a snippet.•••* gnu/packages/linux.scm (singularity)[source](snippet, modules): New fields. [arguments]: Remove 'disable-install-hook' phase. Ludovic Courtès2019-03-051-8/+9
* gnu: wpa-supplicant: Add 'cpe-name' property.•••* gnu/packages/admin.scm (wpa-supplicant-minimal)[properties]: New field. Ludovic Courtès2019-03-051-2/+4
* gnu: Syncthing: Update to 1.1.0.•••* gnu/packages/syncthing.scm (syncthing): Update to 1.1.0. Leo Famulari2019-03-051-2/+2
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