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* gnu: Add python-sphinxcontrib-applehelp.•••* gnu/packages/sphinx.scm (python-sphinxcontrib-applehelp): New public variable. Marius Bakke2019-05-241-0/+20
* gnu: Add python-sphinxcontrib-serializinghtml.•••* gnu/packages/sphinx.scm (python-sphinxcontrib-serializinghtml): New public variable. Marius Bakke2019-05-241-0/+20
* gnu: Move Sphinx and friends to (gnu packages sphinx).•••* gnu/packages/python-xyz.scm (python-sphinxcontrib-websupport, python2-sphinxcontrib-websupport, python-sphinx, python2-sphinx, python-sphinx-gallery, python2-sphinx-gallery, python-sphinx-rtd-theme, python2-sphinx-rtd-theme, python-guzzle-sphinx-theme, python2-guzzle-sphinx-theme, python-sphinxcontrib-newsfeed, python-sphinxcontrib-programoutput, python2-sphinxcontrib-programoutput, python-sphinx-repoze-interface, python2-sphinx-repoze-interface, python-sphinx-cloud-sptheme, python2-sphinx-cloud-sptheme, python-sphinx-alabaster-theme, python2-sphinx-alabaster-theme, python-sphinx-me, python-sphinxcontrib-svg2pdfconverter): Move to ... (gnu): * gnu/packages/sphinx.scm: ... here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly. * gnu/packages/admin.scm, gnu/packages/bioinformatics.scm, gnu/packages/calendar.scm, gnu/packages/cluster.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/elf.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emulators.scm, gnu/packages/finance.scm, gnu/packages/image.scm, gnu/packages/libffi.scm, gnu/packages/mail.scm, gnu/packages/mpd.scm, gnu/packages/openstack.scm, gnu/packages/pdf.scm, gnu/packages/python-web.scm, gnu/packages/search.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/tls.scm, gnu/packages/web.scm: Adjust module imports. Marius Bakke2019-05-2429-337/+402
* gnu: postgresql: Replace with 10.8 [security fixes].•••This fixes CVE-2019-10129 and CVE-2019-10130. * gnu/packages/databases.scm (postgresql)[replacement]: New field. (postgresql-10.8): New variable. Marius Bakke2019-05-241-0/+17
* gnu: Add coq-stdpp.•••* gnu/packages/coq.scm (coq-stdpp): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dan Frumin2019-05-241-0/+57
* gnu: lxqt-panel: fix taskbar plugin's application list issue.•••* gnu/packages/lxqt.scm (lxqt-panel): move `kwindowsystem` from `inputs` to `propagated-inputs` Signed-off-by: Ludovic Courtès <ludo@gnu.org> Reza Alizadeh Majd2019-05-241-1/+5
* gnu: lxqt-session: fix lxqt-rc.xml permission issue•••* gnu/packages/lxqt.scm (lxqt-session): add write permission to lxqt-rc.xml file after initial copy to user directory Signed-off-by: Ludovic Courtès <ludo@gnu.org> Reza Alizadeh Majd2019-05-241-0/+9
* gnu: Add libjit.•••* gnu/packages/assembly.scm (libjit): Add at 0.1.4 Co-authored-by: Ludovic Courtès <ludo@gnu.org> Andy Tai2019-05-241-0/+43
* gnu: guile-next: Update to 2.9.2.•••* gnu/packages/guile.scm (guile-next): Update to 2.9.2. Ludovic Courtès2019-05-241-3/+3
* gnu: Add chocolate-doom.•••* gnu/packages/games.scm (chocolate-doom): New variables. Jakob L. Kreuze2019-05-241-0/+35
* gnu: gajim-omemo: Update to 2.6.29.•••* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.29. Rutger Helling2019-05-241-2/+2
* gnu: parallel: Update to 20190522.•••* gnu/packages/parallel.scm (parallel): Update to 20190522. Tobias Geerinckx-Rice2019-05-231-2/+2
* gnu: wgetpaste: Remove dead paste site.•••* gnu/packages/wget.scm (wgetpaste)[arguments]: Add custom phase to remove newly defunct paste site. Efraim Flashner2019-05-231-0/+8
* gnu: Add ioquake3.•••* gnu/packages/game-development.scm (ioquake3): New variable. Pierre Neidhardt2019-05-231-0/+60
* gnu: strace: Update to 5.1.•••* gnu/packages/linux.scm (strace): Update to 5.1. Marius Bakke2019-05-231-2/+2
* gnu: notmuch: Update to 0.28.4.•••* gnu/packages/mail.scm (notmuch): Update to 0.28.4. [native-inputs]: Change PYTHON-2 and PYTHON2-DOCUTILS to PYTHON and PYTHON-DOCUTILS. Marius Bakke2019-05-231-4/+4
* gnu: silkaj: Update to 0.7.0.•••* gnu/packages/finance.scm (silkaj): Update to 0.7.0. [inputs]: Add python-texttable. Nicolas Goaziou2019-05-231-3/+4
* gnu: flare-game: Update to 1.10.•••* gnu/packages/games.scm (flare-game): Update to 1.10. Nicolas Goaziou2019-05-231-2/+2
* gnu: flare-engine: Update to 1.10.•••* gnu/packages/games.scm (flare-engine): Update to 1.10. Nicolas Goaziou2019-05-231-2/+2
* gnu: salmon: Update to 0.13.1.•••* gnu/packages/bioinformatics.scm (salmon): Update to 0.13.1. [arguments]: Adjust "do-not-look-for-boost" build phase; adjust "prepare-rapmap" phase; adjust "use-system-libraries" phase. [inputs]: Remove bwa, jellyfish, spdlog-for-salmon. [native-inputs]: Add pkg-config. (spdlog-for-salmon, bwa-for-salmon): Remove variables. Ricardo Wurmus2019-05-231-106/+29
* gnu: python-duniterpy: Update to 0.54.1.•••* gnu/packages/finance.scm (python-duniterpy): Update to 0.54.1. Nicolas Goaziou2019-05-231-2/+2
* gnu: wireshark: Update to 3.0.2.•••* gnu/packages/networking.scm (wireshark): Update to 3.0.2. Nicolas Goaziou2019-05-231-2/+2
* import: cran: Ignore invalid packages.•••* guix/import/cran.scm (invalid-packages): New variable. (description->package): Use it. Ricardo Wurmus2019-05-231-1/+7
* gnu: keepassxc: Update to 2.4.1.•••* gnu/packages/password-utils.scm (keepassxc): Update to 2.4.1. [arguments]: Disable update checking. [inputs]: Add qrencode and qtsvg. Nicolas Goaziou2019-05-231-3/+6
* gnu: Add squirrel.•••* gnu/packages/squirrel.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Andy Tai2019-05-222-0/+56
* gnu: git-daemon-service-type: Fix typo "repositories".•••* gnu/services/version-control (git-daemon-service-type)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: darkstat-service-type: Fix typo "statistics".•••* gnu/services/monitoring (darkstat-service-type)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: xf86-input-joystick: Fix typo "control".•••* gnu/packages/xorg (xf86-input-joystick)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: renderproto: Fix typo "protocol".•••* gnu/packages/xorg (renderproto)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: xautomation: Fix typo "programs".•••* gnu/packages/xdisorg (xautomation)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: nghttp2: Fix typo "compatibility".•••* gnu/packages/web (nghttp2)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: python-internetarchive: Fix typo "programmatic".•••* gnu/packages/web (python-internetarchive)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: ruby-markaby: Fix typo "Embedded".•••* gnu/packages/ruby (ruby-markaby)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: python-honcho: Fix typo "several".•••* gnu/packages/python-xyz (python-honcho)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: perl-text-csv-xs: Fix typo "Routines".•••* gnu/packages/perl (perl-text-csv-xs)[synopsis]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: perl-moox-handlesvia: Fix typo "attribute".•••* gnu/packages/perl (perl-moox-handlesvia)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: perl-data-uniqid: Fix typo "system".•••* gnu/packages/perl (perl-data-uniqid)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: pdfposter: Fix typo "multiple".•••* gnu/packages/pdf (pdfposter)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: ocaml-compiler-libs: Fix typo "package".•••* gnu/packages/ocaml (ocaml-compiler-libs)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: ocaml-migrate-parsetree: Fix typo "converter".•••* gnu/packages/ocaml (ocaml-migrate-parsetree)[synopsis]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: mumps: Fix typo "Gaussian".•••* gnu/packages/maths (mumps)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: lxqt-policykit: Fix typo "authentication".•••* gnu/packages/lxqt (lxqt-policykit)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* doc: Murmur: Fix typo "authentication".•••* doc/guix.texi (Murmur): Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: ghc-persistent: Fix typo "systems".•••* gnu/packages/haskell (ghc-persistent)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: ghc-reflection: Fix typo "propagating".•••* gnu/packages/haskell (ghc-reflection)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: ghc-aeson-pretty: Fix typo "readability".•••* gnu/packages/haskell-web (ghc-aeson-pretty)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: go-github-com-btcsuite-btcd-btcec: Fix typo "significantly".•••* gnu/packages/golang (go-github-com-btcsuite-btcd-btcec)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: go-github-com-docker-distribution: Correct grammar and spelling.•••* gnu/packages/golang (go-github-com-docker-distribution)[description]: Correct grammar and spelling. [synopsis]: Correct grammar and spelling. Vagrant Cascadian2019-05-221-4/+4
* gnu: go-github-com-google-cadvisor: Fix typo "performance".•••* gnu/packages/golang (go-github-com-google-cadvisor)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1
* gnu: go-golang-org-x-net-context: Fix typo "cancellation".•••* gnu/packages/golang (go-golang-org-x-net-context)[description]: Fix typo. Vagrant Cascadian2019-05-221-1/+1