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* packages: Add 'file-type' field to 'search-path-specification'.•••Fixes <http://bugs.gnu.org/18033>. * guix/packages.scm (<search-path-specification>): Rename 'directories' field to 'files'. Add 'file-type'. (search-path-specification->sexp): Honor 'file-type'. * gnu/packages/autotools.scm, gnu/packages/bootstrap.scm, gnu/packages/cross-base.scm, gnu/packages/games.scm, gnu/packages/gcc.scm, gnu/packages/glib.scm, gnu/packages/guile.scm, gnu/packages/man.scm, gnu/packages/perl.scm, gnu/packages/pkg-config.scm, gnu/packages/python.scm, gnu/packages/ruby.scm, gnu/packages/xfce.scm: Change 'directories' to 'files'. * tests/packages.scm ("search paths"): Change 'directories' field to 'files'. * guix/scripts/environment.scm (for-each-search-path): Likewise. Ludovic Courtès2014-12-2716-33/+30
* build-system/gnu: Strip with '--strip-all' instead of '--strip-debug'.•••This saves 19% on the 'bin' directory of Coreutils, and certainly helpful for things like Git's 'libexec' directory. * guix/build-system/gnu.scm (gnu-build): Change default value for #:strip-flags to '("--strip-all"). * guix/build/gnu-build-system.scm (strip): Ditto. * gnu/packages/linux.scm (linux-libre)[arguments]: Add #:strip-flags. Ludovic Courtès2014-12-273-2/+7
* gnu: Use patch --force instead of --batch.•••* gnu/packages/linux.scm (linux-libre, net-tools): Pass "--force" to patch, instead of "--batch". * gnu/packages/mit-krb5.scm (mit-krb5): Ditto. Mark H Weaver2014-12-272-3/+3
* build-system/gnu: Add support for non-directory search paths.•••Partly fixes <http://bugs.gnu.org/18033>. * guix/build/utils.scm (search-path-as-list): Rename 'sub-directories' parameter to 'files'. Add #:type parameter and honor it. (set-path-environment-variable): Likewise. Pass #:type to 'search-path-as-list'. * guix/packages.scm (search-path-specification->sexp): Add 'directory as the last item of the tuple. * guix/build/gnu-build-system.scm (set-paths): Add 'type' to search-path pattern. Pass #:type to 'set-path-environment-variable'. Ludovic Courtès2014-12-273-21/+29
* gnu: gettext: Update to 0.19.4.•••* gnu/packages/gettext.scm (gnu-gettext): Update to 0.19.4. Ludovic Courtès2014-12-271-2/+2
* gnu: binutils: Update to 2.25.•••* gnu/packages/base.scm (binutils): Update to 2.25. Ludovic Courtès2014-12-271-2/+2
* gnu: m4: Remove already-applied patch.•••* gnu/packages/patches/m4-readlink-EINVAL.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/m4.scm (m4): Remove patch. Mark H Weaver2014-12-263-21/+1
* gnu: gcc-4.8: Update to 4.8.4.•••* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.4. Remove patch. * gnu/packages/patches/gcc-fix-pr61801.patch: Remove. * gnu-system.am (dist_patch_DATA): Adjust accordingly. Ludovic Courtès2014-12-273-29/+2
* Merge branch 'master' into core-updatesLudovic Courtès2014-12-2699-342/+22291
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| * nls: Add French translation for packages.Ludovic Courtès2014-12-262-0/+1568
| * gnu: Add pysam.•••* gnu/packages/python.scm (python-pysam, python2-pysam): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ricardo Wurmus2014-12-261-0/+38
| * gnu: Add fastjar.•••* gnu/packages/compression.scm (fastjar): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ricardo Wurmus2014-12-261-0/+20
| * gnu: qemu: Update to 2.2.0.•••* gnu/packages/qemu.scm (qemu): Update to 2.2.0. Mark H Weaver2014-12-261-2/+2
| * gnu: ntp: Update to 4.2.8.•••* gnu/packages/ntp.scm (ntp): Update to 4.2.8. Add openssl to inputs. Add pkg-config to native-inputs. Change source URI to archive.ntp.org. Mark H Weaver2014-12-251-14/+20
| * Revert "gnu: matplotlib: Comment out python2-matplotlib."•••This reverts commit afc720d34c43a2fcf0b5871226c15ad6c5f73697. Ludovic Courtès2014-12-231-36/+36
| * build-system/python: Fix 'package-with-explicit-python'.•••Reported by Federico Beffa <beffa@ieee.org> and Eric Bavier <ericbavier@gmail.com>. * guix/build-system/python.scm (package-with-explicit-python): Do nothing when P's build system is not PYTHON-BUILD-SYSTEM. Ludovic Courtès2014-12-231-24/+18
| * gnu: matplotlib: Comment out python2-matplotlib.•••* gnu/packages/python.scm (python2-matplotlib, python2-scipy, python2-numpy): Comment out python2-matplotlib and the packages making use of it as the generation of the derivation of these packages takes very long. Federico Beffa2014-12-231-36/+36
| * Optimize package-transitive-supported-systems.•••* guix/packages.scm (first-value): Remove. (define-memoized/v): New macro. (package-transitive-supported-systems): Rewrite. Mark H Weaver2014-12-211-31/+30
| * packages: Sort Scheme file lists used by 'fold-packages'.•••* gnu/packages.scm (scheme-files): Call 'sort' on result. Ludovic Courtès2014-12-211-18/+23
| * Really remove the 'nix-upstream' submodule.•••* nix-upstream: Remove subproject. Mark H Weaver2014-12-201-0/+0
| * gnu: Add xfce4-terminal.•••* gnu/packages/xfce.scm (xfce4-terminal): New variable. 宋文武2014-12-201-0/+30
| * gnu: Add vte.•••* gnu/packages/gnome.scm (vte, vte/gtk+-2): New variables. 宋文武2014-12-201-1/+56
| * services: xorg: Make SLiM sessions configurable.•••* gnu/services/xorg.scm (%default-xsessions): New variable. (xsessions-directory): New procedure. (slim-service): Add #:sessions and #:auto-login-session parameters. [slim.cfg]: Honor #:sessions. (xinitrc): Adjust accordingly. 宋文武2014-12-201-21/+50
| * Remove 'nix-upstream' submodule.•••* nix/sync-with-upstream: Remove. * bootstrap: Remove uses of 'git submodule' and 'sync-with-usptream'. * .gitmodules: Remove. Ludovic Courtès2014-12-193-103/+1
| * Merge branch 'nix' into 'master'.Ludovic Courtès2014-12-1951-0/+16519
| * gnu: Add bowtie•••* gnu/packages/bioinformatics.scm (bowtie): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ricardo Wurmus2014-12-191-0/+58
| * services: static-networking-service: Switch to (guix build syscalls).•••* gnu/services/networking.scm (static-networking-service): Remove #:inetutils parameter. Rewrite using 'configure-network-interface' and 'set-network-interface-flags'. Ludovic Courtès2014-12-191-35/+37
| * syscalls: Add more procedures for network interfaces.•••* guix/build/syscalls.scm (sizeof*, type-size, write-type, write-types, read-type, read-types, define-c-struct): New macros. (SIOCSIFFLAGS, SIOCGIFADDR, SIOCSIFADDR): New variables. (sockaddr-in, sockaddr-in6): New C structs. (write-socket-address!, read-socket-address, set-network-interface-flags, set-network-interface-address, network-interface-address, configure-network-interface): New procedures. Ludovic Courtès2014-12-192-2/+232
| * gnu: Add Clone.•••* gnu/packages/perl.scm (perl-clone): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ricardo Wurmus2014-12-191-0/+21
| * gnu: cairocffi: Move to python module.•••* gnu/packages/gtk.scm, gnu/packages/python.scm (python-cairocffi, python2-cairocffi): Move variables from gtk to python module to avoid circular dependency. Reported by Mark H Weaver <mhw@netris.org> Federico Beffa2014-12-182-57/+57
| * gnu: matplotlib: Add gtk3 backends and optional dependency. Adjust inputs.•••* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Add gtk3 backends with the necessary inputs and a 'configure-environment' phase. Add the optional 'python-pillow' dependency. Move 'python-pyparsing' from 'inputs' to 'propagated-inputs' as it is required at run time. Federico Beffa2014-12-181-41/+87
| * gnu: Add cairocffi.•••* gnu/packages/gtk.scm (python-cairocffi, python2-cairocffi): New variables. Federico Beffa2014-12-181-0/+57
| * gnu: Add xcffib•••* gnu/packages/python.scm (python-xcffib, python2-xcffib): New variables. Federico Beffa2014-12-181-0/+43
| * build/python-build-system: Fix easy-install.pth collisions.•••* guix/build/python-build-system.scm (rename-pth-file): New rename-pth-file phase and corresponding function. Federico Beffa2014-12-181-9/+26
| * gnu: icecat: Build with PulseAudio support.•••* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add --enable-pulseaudio. Ludovic Courtès2014-12-171-1/+2
| * gnu: linux-libre: Update to 3.18.1•••* gnu/packages/linux.scm (linux-libre): Update to version 3.18.1. Jason Self2014-12-171-2/+2
| * gnu: Add Test::Simple.•••* gnu/packages/perl.scm (perl-test-simple): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ricardo Wurmus2014-12-171-0/+19
| * gnu: Add Test::Deep.•••* gnu/packages/perl.scm (perl-test-deep): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ricardo Wurmus2014-12-171-0/+24
| * gnu: Add Test::NoWarnings.•••* gnu/packages/perl.scm (perl-test-nowarnings): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ricardo Wurmus2014-12-171-0/+24
| * gnu: Add Test::Tester.•••* gnu/packages/perl.scm (perl-test-tester): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ricardo Wurmus2014-12-171-0/+21
| * Revert "gnu: python-numpy-bootstrap: Reduce matrix size in failing test."•••This reverts commit 31557440c29f8d93b366422bfec4dab341eff79f as it did not provide the desired effect. The test is still failing. Federico Beffa2014-12-161-18/+11
| * gnu: Add bedtools•••* gnu/packages/bioinformatics.scm (bedtools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ricardo Wurmus2014-12-161-0/+49
| * gnu: tmux: Update to 1.9a.•••* gnu/packages/tmux.scm (tmux): Update to 1.9a Signed-off-by: Ludovic Courtès <ludo@gnu.org> Tomáš Čech2014-12-161-2/+2
| * gnu: samtools: disable tests for non-64-bit systems•••* gnu/packages/bioinformatics.scm (samtools): disable tests for all non-64-bit systems because of an upstream bug in the test data. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ricardo Wurmus2014-12-161-1/+8
| * gnu: groff: Disable parallel builds.•••* gnu/packages/groff.scm (groff): Disable parallel builds. Mark H Weaver2014-12-161-0/+1
| * gnu: groff: Update to 1.22.3.•••* gnu/packages/groff.scm (groff): Update to 1.22.3. Mark H Weaver2014-12-161-5/+6
| * gnu: ghostscript: Update to 9.14.0.•••* gnu/packages/ghostscript.scm (ghostscript): Update to 9.14.0. Change license to agpl3+. Mark H Weaver2014-12-161-3/+3
| * gnu: lcms: Update to 2.6.•••* gnu/packages/ghostscript.scm (lcms): Update to 2.6. Mark H Weaver2014-12-161-2/+3
| * gnu: icecat: Apply security updates for CVE-2014-{1587,1590,1592,1593,1594}.•••* gnu/packages/patches/icecat-CVE-2014-1587-bug-1042567.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1072847.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1079729.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1080312.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1089207.patch, gnu/packages/patches/icecat-CVE-2014-1590.patch, gnu/packages/patches/icecat-CVE-2014-1592.patch, gnu/packages/patches/icecat-CVE-2014-1593.patch, gnu/packages/patches/icecat-CVE-2014-1594.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat): Add them. Mark H Weaver2014-12-1511-1/+1308
| * profiles: Fix removal of the next-to-last item in a profile.•••Fixes a bug whereby removing the next-to-last item in a profile would lead to an obscure error, as shown at <http://lists.gnu.org/archive/html/guix-devel/2014-12/msg00292.html>. Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>. * guix/profiles.scm (profile-derivation)[inputs]: Use (list info-dir "out") instead of just INFO-DIR. Ludovic Courtès2014-12-151-1/+7
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