| Commit message (Expand) | Author | Age | Files | Lines |
|---|
| * | Revert "gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]."•••This reverts commit ae46cd0e4cfb1f06d099b2cda1f9e702e86c90e9.
| Leo Famulari | 2016-07-28 | 8 | -65/+501 |
| * | guix package: Suggest prefix search path settings.•••* guix/scripts/package.scm (build-and-use-profile): Pass #:kind 'prefix
to 'display-search-paths'.
| Ludovic Courtès | 2016-07-28 | 1 | -1/+2 |
| * | gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207].•••* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch,
gnu/packages/patches/gd-fix-test-on-i686.patch: Delete files.
* gnu/packages/patches/gd-fix-tests-on-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gd.scm (gd): Update to 2.2.3.
[source]: Update patches field accordingly.
| Mark H Weaver | 2016-07-28 | 8 | -501/+65 |
| * | gnu: commencement: 'guile-final' is now "hidden".•••This way, we no longer have this annoying warning:
$ guix build guile -n
guix build: warning: ambiguous package specification `guile'
guix build: warning: choosing guile-2.0.11 from gnu/packages/guile.scm:128:2
* gnu/packages/commencement.scm (guile-final): Use 'hidden-package'.
* tests/packages.scm ("fold-packages, hidden package"): New test.
| Ludovic Courtès | 2016-07-28 | 2 | -1/+17 |
| * | packages: Add 'hidden-package'.•••* guix/packages.scm (hidden-package, hidden-package?): New procedures.
* gnu/packages.scm (fold-packages): Filter out 'hidden-package?'.
* tests/packages.scm ("hidden-package"): New test.
| Ludovic Courtès | 2016-07-28 | 3 | -1/+21 |
| * | gnu: Add asciinema.•••* gnu/packages/terminals.scm (asciinema): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Alex Griffin | 2016-07-28 | 1 | -0/+38 |
| * | gnu: gnome: Propagate file-roller.•••* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add file-roller.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Alex Griffin | 2016-07-28 | 1 | -0/+2 |
| * | doc: Discourage software bundling.•••Fixes <http://bugs.gnu.org/24008>.
Suggested by ng0 <ng0@we.make.ritual.n0.is>.
* doc/contributing.texi (Submitting Patches): Add item about bundling.
| Ludovic Courtès | 2016-07-28 | 1 | -0/+14 |
| * | doc: Send changes in your patch which are related.•••* doc/contributing.texi (Submitting Patches): New @item:
This gives information about sending related changes and examples on
what we view as related changes.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| ng0 | 2016-07-28 | 1 | -0/+7 |
| * | doc: Mention separate branch for packages with many dependents.•••Suggested by ng0 <ng0@we.make.ritual.n0.is>.
* doc/contributing.texi (Submitting Patches): Add note on packages with
more than 100 dependents.
| Ludovic Courtès | 2016-07-28 | 1 | -0/+7 |
| * | gnu: r-genomicfeatures: Update to 1.24.5.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.5.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-bsgenome: Update to 1.40.1.•••* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-iranges: Update to 2.6.1.•••* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-limma: Update to 3.28.17.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-xvector: Update to 0.12.1.•••* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-genomicranges: Update to 1.24.2.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.2.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-annotationdbi: Update to 1.34.4.•••* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-biocparallel: Update to 1.6.3.•••* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-biostrings: Update to 2.40.2.•••* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-summarizedexperiment: Update to 1.2.3.•••* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-genomicalignments: Update to 1.8.4.•••* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-rtracklayer: Update to 1.32.2.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-genomeinfodb: Update to 1.8.3.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: r-s4vectors: Update to 0.10.2.•••* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
| Ben Woodcroft | 2016-07-28 | 1 | -2/+2 |
| * | gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}].•••* gnu/packages/patches/mysql-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (mysql): Update to 5.7.13.
| Leo Famulari | 2016-07-28 | 3 | -2/+61 |
| * | gnu: the-silver-searcher: Update to 0.32.0.•••* gnu/packages/code.scm(the-silver-searcher): Update to 0.32.0.
| Tomáš Čech | 2016-07-28 | 1 | -2/+2 |
| * | gnu: imagemagick: Update to 6.9.5-3.•••* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-3.
| Leo Famulari | 2016-07-27 | 1 | -2/+2 |
| * | gnu: mariadb: Update to 10.1.16.•••* gnu/packages/databases.scm (mariadb): Update to 10.1.16.
| Leo Famulari | 2016-07-27 | 1 | -2/+2 |
| * | gnu: calibre: Update to 2.63.0.•••* gnu/packages/ebook.scm (calibre): Update to 2.63.0.
[inputs]: Remove unnecessary imagemagick dependency.
[phases]: Use modify-phases.
* gnu/packages/patches/calibre-drop-unrar.patch: Update
for new version.
Signed-off-by: Roel Janssen <roel@gnu.org>
| Alex Griffin | 2016-07-27 | 2 | -36/+26 |
| * | system: Source /etc/environment before $HOME/.guix-profile/etc/profile.•••* gnu/system.scm (operating-system-etc-service) <profile>: Move sourcing
of /etc/environment before that of $HOME/.guix-profile/etc/profile.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Carlos Sánchez de La Lama | 2016-07-27 | 1 | -10/+11 |
| * | gnu: krona-tools: Update to 2.7.•••* gnu/packages/web.scm (krona-tools): Update to 2.7.
[arguments]: Delete 'build' phase. Install new scripts.
| Ben Woodcroft | 2016-07-27 | 1 | -21/+11 |
| * | gnu: diamond: Update to 0.8.16.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16.
| Ben Woodcroft | 2016-07-27 | 1 | -2/+2 |
| * | gnu: guix: Update revision number in version.•••This is a follow-up to commit 95af24a2f1fb58eb9e6ee902c9330534f0aca9f3.
Reported by Alex Kost <alezost@gmail.com>.
| Andreas Enge | 2016-07-27 | 1 | -1/+1 |
| * | tests: Use unbuffered input ports when decompressing from 'guix publish'.•••Fixes <http://bugs.gnu.org/24060>.
Reported by Chris Marusich <cmmarusich@gmail.com>.
* tests/publish.scm (http-get-port): Explicitly call
'open-socket-for-uri' and add calls to 'setvbuf'.
| Ludovic Courtès | 2016-07-27 | 1 | -2/+10 |
| * | zlib: Protect against non-empty port internal buffers.•••* guix/zlib.scm (make-gzip-input-port)[gzfile]: Error out
if (drain-input port) returns a non-empty string.
* guix/zlib.scm (make-gzip-output-port)[gzfile]: Call 'force-output'.
| Ludovic Courtès | 2016-07-27 | 1 | -4/+15 |
| * | zlib: Clarify when 'gzread!' can return zero.•••* guix/zlib.scm (gzread!): Augment docstring to clarify when zero is
returned (based on reading zlib code).
(make-gzip-input-port)[read!]: Remove scary comment.
| Ludovic Courtès | 2016-07-27 | 1 | -2/+2 |
| * | gnu: magit: Fix rebase commands that require perl.•••* gnu/packages/emacs.scm (magit)[inputs]: Add 'perl'.
[arguments]: Adjust 'patch-exec-paths' phase to make some rebase
commands find 'perl'.
Signed-off-by: Alex Kost <alezost@gmail.com>
| Alex Griffin | 2016-07-27 | 1 | -2/+8 |
| * | gnu: Add httping.•••* gnu/packages/networking.scm (httping): New variable.
| Tobias Geerinckx-Rice | 2016-07-27 | 1 | -0/+36 |
| * | gnu: Add missing copyright symbol.•••* gnu/packages/networking.scm: Add missing "©" to header comments.
| Tobias Geerinckx-Rice | 2016-07-27 | 1 | -1/+1 |
| * | gnu: gmime: Remove 'gpg' to 'gpg2' substitution.•••* gnu/packages/mail.scm (gmime)[arguments]: Remove the substitution which
previously changed 'gpg' to 'gpg2' in 'patch-paths-in-tests' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
| ng0 | 2016-07-26 | 1 | -3/+4 |
| * | gnu: dmd: Remove package, superseded by shepherd.•••* gnu/packages/admin.scm (dmd): Remove variable.
| Andreas Enge | 2016-07-26 | 1 | -40/+0 |
| * | gnu: Add perl-db-file.•••* gnu/packages/databases.scm (perl-db_file): New variable.
Signed-off-by: Andreas Enge <andreas@enge.fr>
| Danny Milosavljevic | 2016-07-26 | 1 | -0/+32 |
| * | profiles: Output in 'package->manifest-entry' defaults to "out".•••Fixes <http://bugs.gnu.org/24029>.
Reported by Dylan Jeffers <sapientech@openmailbox.org>.
* guix/profiles.scm (package->manifest-entry): Change #:output to
default to "out".
(packages->manifest): Add 'package?' in second 'match' clause.
* tests/profiles.scm ("package->manifest-entry defaults to \"out\""):
New test.
| Ludovic Courtès | 2016-07-26 | 2 | -6/+15 |
| * | environment: Set 'GUIX_ENVIRONMENT' to the profile.•••* guix/scripts/environment.scm (create-environment): Set
'GUIX_ENVIRONMENT' to PROFILE.
* tests/guix-environment.sh: Test it.
* doc/guix.texi (Invoking guix environment): Document it.
| Ludovic Courtès | 2016-07-26 | 3 | -3/+16 |
| * | import: pypi: Correctly handle new-style URLs.•••Fixes <http://bugs.gnu.org/23997>.
* guix/import/pypi.scm (guix-package->pypi-name): Rewrite using
'basename' and 'hyphen-package-name->name+version'.
* tests/pypi.scm ("guix-package->pypi-name, old URL style")
("guix-package->pypi-name, new URL style"): New tests.
| Ludovic Courtès | 2016-07-26 | 2 | -6/+23 |
| * | doc: Explain authentication in "System Installation".•••Suggested by Vincent Legoll <vincent.legoll@gmail.com>.
* doc/guix.texi (OPENPGP-SIGNING-KEY-ID): New constant.
(Binary Installation): Use it.
(USB Stick Installation): Copy and adjust the authentication bit from
"Binary Installation".
| Ludovic Courtès | 2016-07-26 | 1 | -1/+26 |
| * | doc: Better illustration use of package revision numbers.•••* doc/guix.texi (Version Numbers): Add the
revision to the example of the git package used in 7.6.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| ng0 | 2016-07-26 | 1 | -3/+5 |
| * | gnu: icecat: Install icons.•••* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add
'install-icons' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Alex Griffin | 2016-07-26 | 1 | -1/+16 |
| * | gnu: Add haveged.•••* gnu/packages/linux.scm (haveged): New variable.
| Tobias Geerinckx-Rice | 2016-07-26 | 1 | -0/+30 |
| * | gnu: Add perceptualdiff.•••* gnu/packages/image.scm (perceptualdiff): New variable.
| Tobias Geerinckx-Rice | 2016-07-26 | 1 | -0/+32 |
