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* gnu: r-optparse: Update to 1.6.6.•••* gnu/packages/cran.scm (r-optparse): Update to 1.6.6. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-04-281-2/+4
* gnu: r-sf: Update to 0.9-2.•••* gnu/packages/cran.scm (r-sf): Update to 0.9-2. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-future-apply: Update to 1.5.0.•••* gnu/packages/cran.scm (r-future-apply): Update to 1.5.0. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-etm: Update to 1.1.•••* gnu/packages/cran.scm (r-etm): Update to 1.1. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-future: Update to 1.17.0.•••* gnu/packages/cran.scm (r-future): Update to 1.17.0. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-protviz: Update to 0.6.4.•••* gnu/packages/cran.scm (r-protviz): Update to 0.6.4. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-rgl: Update to 0.100.54.•••* gnu/packages/cran.scm (r-rgl): Update to 0.100.54. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-ggeffects: Update to 0.14.3.•••* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.3. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-bayestestr: Update to 0.6.0.•••* gnu/packages/cran.scm (r-bayestestr): Update to 0.6.0. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-emmeans: Update to 1.4.6.•••* gnu/packages/cran.scm (r-emmeans): Update to 1.4.6. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-04-281-2/+4
* gnu: r-raster: Update to 3.1-5.•••* gnu/packages/cran.scm (r-raster): Update to 3.1-5. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-insight: Update to 0.8.3.•••* gnu/packages/cran.scm (r-insight): Update to 0.8.3. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-tinytex: Update to 0.22.•••* gnu/packages/cran.scm (r-tinytex): Update to 0.22. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-tsp: Update to 1.1-10.•••* gnu/packages/cran.scm (r-tsp): Update to 1.1-10. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-broom: Update to 0.5.6.•••* gnu/packages/cran.scm (r-broom): Update to 0.5.6. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-04-281-2/+4
* gnu: r-distillery: Update to 1.0-7.•••* gnu/packages/cran.scm (r-distillery): Update to 1.0-7. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-ff: Update to 2.2-14.2.•••* gnu/packages/cran.scm (r-ff): Update to 2.2-14.2. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-powerlaw: Update to 0.70.6.•••* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.6. [propagated-inputs]: Remove r-vgam; add r-pracma. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-04-281-3/+5
* gnu: r-shinyfiles: Update to 0.8.0.•••* gnu/packages/cran.scm (r-shinyfiles): Update to 0.8.0. Ricardo Wurmus2020-04-281-2/+2
* gnu: Add r-ibreakdown.•••* gnu/packages/cran.scm (r-ibreakdown): New variable. Ricardo Wurmus2020-04-281-0/+26
* gnu: Add r-ingredients.•••* gnu/packages/cran.scm (r-ingredients): New variable. Ricardo Wurmus2020-04-281-0/+40
* gnu: r-purrr: Update to 0.3.4.•••* gnu/packages/statistics.scm (r-purrr): Update to 0.3.4. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-04-281-2/+4
* gnu: r-plotrix: Update to 3.7-8.•••* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-8. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-withr: Update to 2.2.0.•••* gnu/packages/statistics.scm (r-withr): Update to 2.2.0. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-04-281-2/+4
* gnu: r-xml2: Update to 1.3.2.•••* gnu/packages/statistics.scm (r-xml2): Update to 1.3.2. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-dbplyr: Update to 1.4.3.•••* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.3. [propagated-inputs]: Add r-lifecycle. [native-inputs]: Add r-knitr. Ricardo Wurmus2020-04-281-2/+5
* gnu: r-tibble: Update to 3.0.1.•••* gnu/packages/statistics.scm (r-tibble): Update to 3.0.1. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-foreign: Update to 0.8-78.•••* gnu/packages/statistics.scm (r-foreign): Update to 0.8-78. Ricardo Wurmus2020-04-281-2/+2
* gnu: r-with-tests, r-minimal: Update to 4.0.0.•••* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.0. (r-with-tests)[arguments]: Add phase "set-locales". [native-inputs]: Add texlive-ae, texlive-inconsolata, and texlive-latex-xkeyval to texlive-union. [inputs]: Replace pcre with pcre2. Ricardo Wurmus2020-04-281-5/+13
* gnu: stellarium: Update to 0.20.1.•••* gnu/packages/astronomy.scm (stellarium): Update to 0.20.1. Björn Höfling2020-04-281-2/+2
* doc: Update url to singularity before link rot occurs.•••* doc/guix.texi: Update url to singularity before link rot occurs. Signed-off-by: Ludovic Courtès <ludo@gnu.org> operator.name2020-04-271-1/+1
* guix: edit: Make nano the default editor.•••* guix/scripts/edit.scm: Make nano the default editor. Nano is sensible default, as it is installed by base system. For development, user can set custom value for $EDITOR. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Raghav Gururajan2020-04-271-4/+3
* import: crate: Gracefully handle non-existent crates.•••Fixes <https://bugs.gnu.org/40891>. Reported by Hartmut Goebel <h.goebel@crazy-compilers.com>. * guix/import/crate.scm (crate->guix-package): Wrap value of 'version-number' and 'version*' in (and crate ...). Ludovic Courtès2020-04-271-6/+8
* tests: Remove trailing commas in JSON tests.•••These commas are rejected by Guile-JSON 3.5.0. * tests/crate.scm (test-foo-dependencies) (test-root-dependencies, test-intermediate-1-dependencies) (test-intermediate-2-dependencies): Remove trailing commas. * tests/gem.scm (test-bar-json): Likewise. * tests/pypi.scm (test-json): Likewise. Ludovic Courtès2020-04-273-15/+17
* gnu: Update minimap2 to 2.17.•••* gnu/packages/bioinformatics.scm (minimap2): Update to 2.17. Roel Janssen2020-04-271-2/+2
* gnu: Add sbcl-stumpwm-swm-gaps.•••* gnu/packages/wm.scm (sbcl-stumpwm-swm-gaps): New variable. Oleg Pykhalov2020-04-271-0/+30
* gnu: tarsplitter: Fix typo in description (spilt/split).•••* gnu/packages/compression.scm (tarsplitter)[description]: Fix typo. Vincent Legoll2020-04-271-1/+1
* doc: guix: Fix grammar in "Debugging Build Failures"•••* doc/guix.texi (Debugging Build Failures): Fix grammar. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> TomZ2020-04-271-1/+1
* gnu: Add wf-recorder.•••* gnu/packages/video.scm (wf-recorder): New variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com> Alex McGrath2020-04-271-0/+31
* gnu: ktsuss: Use setuid "su" and "sudo" commands.•••This has ktsudo actually gain root access. * gnu/packages/admin.scm (ktsuss)[arguments]: Instead of <sudo>/bin/{su,sudo} file names, use the setuid' verrsions. Raghav Gururajan2020-04-271-8/+6
* gnu: herbstluftwm: Update to 0.8.1••• * gnu/packages/wm.scm: herbstluftwm: Update to 0.8.1 Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> Boris A. Dekshteyn2020-04-271-18/+16
* gnu: fldigi: Update to 4.1.12.•••* gnu/packages/radio.scm (fldigi): Update to 4.1.12. Guillaume Le Vaillant2020-04-271-2/+2
* file-systems: mount the PID cgroup filesystem.•••* gnu/system/file-systems.scm (%control-groups): Add "pids". * gnu/services/docker.scm (docker-shepherd-service): Resolve a TODO. This has allowed me to make a specific configuration of nsjail work. Jakub Kądziołka2020-04-272-2/+4
* gnu: Add python-scikit-rebate.•••* gnu/packages/machine-learning.scm (python-scikit-rebate): New variable. Roel Janssen2020-04-271-0/+29
* gnu: Add python-deeptools.•••* gnu/packages/bioinformatics.scm (python-deeptools): New variable. Roel Janssen2020-04-271-1/+36
* gnu: Add python-deeptoolsintervals.•••* gnu/packages/bioinformatics.scm (python-deeptoolsintervals): New variable. Roel Janssen2020-04-271-0/+21
* gnu: Add python-bitarray.•••* gnu/packages/python-xyz.scm (python-bitarray): New variable. Roel Janssen2020-04-271-1/+25
* gnu: Add r-cummerbund.•••* gnu/packages/bioconductor.scm (r-cummerbund): New variable. Roel Janssen2020-04-271-0/+30
* gnu: Add r-inum.•••* gnu/packages/cran.scm (r-inum): New variable. Roel Janssen2020-04-271-0/+21
* gnu: Add r-ggpmisc.•••* gnu/packages/cran.scm (r-ggpmisc): New variable. Roel Janssen2020-04-271-0/+30
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