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* gnu: linux-libre 4.19: Update to 4.19.189.•••* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.189. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari2021-04-281-2/+2
* gnu: linux-libre 5.4: Update to 5.4.115.•••* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.115. (linux-libre-5.4-pristine-source): Update hash. Leo Famulari2021-04-281-2/+2
* gnu: linux-libre 5.10: Update to 5.10.33.•••* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.33. (linux-libre-5.10-pristine-source): Update hash. Leo Famulari2021-04-281-2/+2
* gnu: linux-libre: Update to 5.11.17.•••* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.17. (linux-libre-5.11-pristine-source): Update hash. Leo Famulari2021-04-281-2/+2
* .guix-authorizations: Remove lle_bout.•••* .guix-authorizations: Remove lle_bout from the committers. Marius Bakke2021-04-281-2/+0
* gnu: pigx-bsseq: Update to 0.1.3.•••* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.3. [inputs]: Add r-ggbio, r-matrixstats, and r-reshape2. Ricardo Wurmus2021-04-281-2/+5
* gnu: ustr: Don't use vsnprintf.•••This follows up on 1059d1570b7078e6a83e067577b42ed24ee25b55, which caused new tests failures on non-cross builds. * gnu/packages/textutils.scm (ustr)[arguments]: Return "0" for ./autoconf_vsnprintf. Tobias Geerinckx-Rice2021-04-281-1/+1
* gnu: giac: Update to 1.7.0-3.•••* gnu/packages/algebra.scm (giac): Update to 1.7.0-3. Nicolas Goaziou2021-04-281-2/+2
* gnu: python-pikepdf: Update to 2.11.4.•••* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.11.4. Nicolas Goaziou2021-04-281-2/+2
* gnu: emacs-auctex: Update to 13.0.10.•••* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.10. Nicolas Goaziou2021-04-281-2/+2
* gnu: ustr: Cross-compile.•••Also fix <http://issues.guix.gnu.org/48084>. * gnu/packages/text-utils.scm (ustr)[arguments]: Use CC-FOR-TARGET. Add a new 'fix-cross-compilation phase. Tobias Geerinckx-Rice2021-04-281-1/+13
* gnu: less: Update to 581.2.•••* gnu/packages/less.scm (less): Update to 581.2. Tobias Geerinckx-Rice2021-04-281-2/+2
* gnu: iproute2: Update to 5.12.0.•••* gnu/packages/linux.scm (iproute2): Update to 5.12.0. Tobias Geerinckx-Rice2021-04-281-2/+2
* gnu: folly: Update to 2021.04.26.00.•••* gnu/packages/cpp.scm (folly): Update to 2021.04.26.00. Tobias Geerinckx-Rice2021-04-281-2/+2
* gnu: xsimd: Update to 7.5.0.•••* gnu/packages/cpp.scm (xsimd): Update to 7.5.0. Tobias Geerinckx-Rice2021-04-281-2/+2
* gnu: fcitx-qt5: Update to 1.2.6.•••* gnu/packages/fcitx.scm (fcitx-qt5): Update to 1.2.6. Tobias Geerinckx-Rice2021-04-281-2/+2
* gnu: ungoogled-chromium: Update to 90.0.4430.93.•••* gnu/packages/patches/ungoogled-chromium-system-nspr.patch, gnu/packages/patches/ungoogled-chromium-system-opus.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 90. (debian-patch): Make REVISION optional, default to %DEBIAN-REVISION. (%chromium-version): New variable. (%ungoogled-revision): Set to 90.0.4430.85-1-11-g3184907. (%debian-revision): Set to debian/90.0.4430.85-1. (%debian-patches): Add more patches; update hashes. (%ungoogled-origin): Update hash. (%guix-patches): Remove obsolete patches. (libvpx/chromium): Update to 1.9.0-147-g61edec1ef. (ungoogled-chromium)[version]: Base on %CHROMIUM-REVISION and the last component of %UNGOOGLED-REVISION, a 'git describe --long' style ID. [arguments]: Add build_with_flite_lib in #:configure-flags. Add openjpeg substitution in #:phases. Marius Bakke2021-04-284-174/+52
* gnu: uBlock Origin: Update to 1.35.0.•••* gnu/packages/browser-extensions.scm (uassets): Update to edfb13aae. (ublock-origin): Update to 1.35.0. Marius Bakke2021-04-281-4/+4
* gnu: LLVM, Clang: Add 12.0.0.•••* gnu/packages/patches/clang-12-tools-extra-directory.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (llvm-12, clang-runtime-12, clang-12, clang-toolchain-12): New variables. (llvm-11): Inherit from LLVM-12. Marius Bakke2021-04-283-4/+60
* gnu: Add lofreq.•••* gnu/packages/bioinformatics.scm (lofreq): New variable. Ricardo Wurmus2021-04-281-0/+34
* tests: Add gui-uefi-installed-os test.•••* gnu/installer/tests.scm (conclude-installation): Rename it into ... (start-installation): ... this new procedure. (complete-installation): New procedure. (choose-partitioning): Add an uefi-support? argument. * gnu/tests/install.scm (uefi-firmware): New procedure. (run-install, qemu-command/writable-image, gui-test-program, installation-target-os-for-gui-tests): Add an uefi-support? argument. (%extra-packages): Add grub-efi, fatfsck/static and dosfstools. (%test-gui-installed-os): New variable. Mathieu Othacehe2021-04-282-17/+128
* installer: Add MSDOS disk label support on UEFI systems.•••Fixes: <https://issues.guix.gnu.org/47889>. * gnu/installer/parted.scm (esp-partition?): Remove the MSDOS check. (auto-partition!): On MSDOS disks, check if an ESP partition is present. If that's the case, do not remove it. Otherwise, if UEFI is supported, create one. Mathieu Othacehe2021-04-281-26/+19
* installer: Force GPT disk label when UEFI is supported.•••* gnu/installer/newt/partition.scm (run-label-page): Force the GPT disk label when UEFI is supported. Mathieu Othacehe2021-04-281-7/+10
* gnu: kraken2: Replace references to rsync.•••* gnu/packages/bioinformatics.scm (kraken2)[inputs]: Add rsync. [arguments]: Replace references to rsync; use WITH-DIRECTORY-EXCURSION to avoid repeating "scripts". Ricardo Wurmus2021-04-281-38/+47
* gnu: global: Fix cross compiling.•••Coreutils was removed during patch review erroneously. Reported by Maxime Devos <maximedevos@telenet.be>. * gnu/packages/code.scm (global)[inputs]: Add coreutils. Efraim Flashner2021-04-281-1/+2
* ci: Add custom subset.•••* gnu/ci.scm (cuirass-jobs): Add 'custom susbset. Mathieu Othacehe2021-04-281-0/+9
* ci: Add arguments->systems procedure.•••* gnu/ci.scm (arguments->systems): New procedure. (cuirass-jobs): Use it. Mathieu Othacehe2021-04-281-4/+10
* ci: Factorize image->job procedure.•••* gnu/ci.scm (image-jobs): Extract ->job procedure into ... (image->job): ... this new procedure. Mathieu Othacehe2021-04-281-30/+38
* gnu: global: Fix globash.•••* gnu/packages/code.scm (global)[arguments]: Add 'fix-globash phase. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> luhui2021-04-281-0/+7
* gnu: Add python-pyliftover.•••* gnu/packages/bioinformatics.scm (python-pyliftover): New variable. Ricardo Wurmus2021-04-281-0/+25
* gnu: keepassxc: Wrap binary with wrap-qt-program.•••* gnu/packages/password-utils.scm (keepassxc)[arguments]: Import qt-utils module. Replace custom 'wrap-bin phase with 'wrap-qt phase. Efraim Flashner2021-04-281-11/+10
* gnu: slurm: Link plugins with libslurm.•••* gnu/packages/parallel.scm (slurm)[arguments]: Add phase patch-plugin-linker-flags to link plugins with libslurm; run autoconf phase after this new phase. Ricardo Wurmus2021-04-281-1/+6
* gnu: krona-tools: Install download scripts.•••* gnu/packages/web.scm (krona-tools)[inputs]: Add curl and make. [arguments]: Patch and install update scripts to /share. Ricardo Wurmus2021-04-281-4/+33
* gnu: krona-tools: Update to 2.8.•••* gnu/packages/web.scm (krona-tools): Update to 2.8. Ricardo Wurmus2021-04-281-3/+3
* Revert "download: Use Disarchive as a last resort."•••This reverts commit 66b14dccdd0d83c875ce3a8d50ceab8b6f0a3ce2, which broke 'guix pull'. Timothy Sample2021-04-283-95/+14
* gnu: Add mmc-utils.•••* gnu/packages/disk.scm (mmc-utils): New variable. Leo Famulari2021-04-281-1/+38
* download: Use Disarchive as a last resort.•••* guix/download.scm (%disarchive-mirrors): New variable. (%disarchive-mirror-file): New variable. (built-in-download): Add 'disarchive-mirrors' keyword argument and pass its value along to the 'builtin:download' derivation. (url-fetch): Pass '%disarchive-mirror-file' to 'built-in-download'. * guix/scripts/perform-download.scm (perform-download): Read Disarchive mirrors from the environment and pass them to 'url-fetch'. * guix/build/download.scm (disarchive-fetch/any): New procedure. (url-fetch): Add 'disarchive-mirrors' keyword argument, use it to make a list of URIs, and use the new procedure to fetch the file if all other methods fail. Timothy Sample2021-04-273-14/+95
* swh: Add a directory download procedure.•••* guix/swh.scm (swh-directory-download): New procedure (with implementation extracted from 'swh-download'). (swh-download): Use it to download the revision directory. Timothy Sample2021-04-271-29/+36
* services: mysql: Add extra-environment as configuration option.•••* gnu/services/databases.scm (mysql-configuration): Add extra-environment (mysql-service): Use #:log-file and #:environment-variables * doc/guix.texi: Document it. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> methuselah-02021-04-272-1/+9
* gnu: Add gdc-11.•••* gnu/packages/gcc.scm (gdc-11): New variable. Efraim Flashner2021-04-271-0/+5
* gnu: Add gcc-toolchain-11.•••* gnu/packages/gcc.scm (gcc-11): New variable. * gnu/packages/commencement.scm (gcc-toolchain-11): New variable. Efraim Flashner2021-04-272-0/+17
* gnu: lagrange: Update to 1.3.4.•••* gnu/packages/web-browsers.scm (lagrange): Update to 1.3.4. Tobias Geerinckx-Rice2021-04-271-2/+2
* gnu: ugrep: Use GIT-FILE-NAME helper.•••* gnu/packages/search.scm (ugrep)[source]: Use GIT-FILE-NAME. Tobias Geerinckx-Rice2021-04-271-1/+1
* gnu: ugrep: Update to 3.1.12.•••* gnu/packages/search.scm (ugrep): Update to 3.1.12. Tobias Geerinckx-Rice2021-04-271-3/+3
* gnu: gcide: Update to 0.53.•••* gnu/packages/dictionaries.scm (gcide): Update to 0.53. Efraim Flashner2021-04-271-3/+3
* gnu: freecad: Update to 0.19.2.•••* gnu/packages/engineering.scm (freecad): Update to 0.19.2. Tobias Geerinckx-Rice2021-04-271-3/+2
* gnu: html2text: Add informative BSD-4 licence.•••* gnu/packages/textutils.scm (html2text)[license]: Add bsd-4. Tobias Geerinckx-Rice2021-04-271-1/+2
* gnu: html2text: Fix cross-compilation.•••* gnu/packages/textutils.scm (html2text)[arguments]: Set $CXX to the correct (CC-FOR-TARGET). Tobias Geerinckx-Rice2021-04-271-1/+2
* gnu: html2text: Run ./configure without errors.•••* gnu/packages/textutils.scm (html2text)[arguments]: Add a custom 'configure phase. Replace the custom 'fix-paths phase with the customary #:make-flags equivalent. Tobias Geerinckx-Rice2021-04-271-5/+7
* gnu: Add html2text.•••* gnu/packages/textutils.scm (html2text): New variable. Guillaume Le Vaillant2021-04-271-0/+33